Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001484-TA|BGIBMGA001484-PA|IPR001607|Zinc finger,
UBP-type, IPR001394|Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2
         (481 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   1.6  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   8.3  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   8.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 234 NLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKANGRKVYHSRSYTRQEMNDV 287
           NL N         S  N+   S  FN LP++ ++  G     S  Y   + ND+
Sbjct: 451 NLDNVSLSQVPALSTPNLLSLSLAFNSLPTVALEVAGN--ISSLRYLNLDYNDL 502


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 365 WIRRLPNVLCLHLKRFRWHNYFRT 388
           W+  + N L L LKR +W+  F+T
Sbjct: 146 WLSNV-NSLTLTLKRKKWNLLFKT 168


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 365 WIRRLPNVLCLHLKRFRWHNYFRT 388
           W+  + N L L LKR +W+  F+T
Sbjct: 72  WLSNV-NSLTLTLKRKKWNLLFKT 94


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,394
Number of Sequences: 317
Number of extensions: 4739
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 481
length of database: 114,650
effective HSP length: 59
effective length of query: 422
effective length of database: 95,947
effective search space: 40489634
effective search space used: 40489634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)