Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001484-TA|BGIBMGA001484-PA|IPR001607|Zinc finger,
UBP-type, IPR001394|Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 108 9e-24
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 108 9e-24
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 107 1e-23
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 107 2e-23
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 101 8e-22
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 92 6e-19
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 91 1e-18
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 88 1e-17
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 86 6e-17
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 86 6e-17
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 86 6e-17
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 83 3e-16
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 80 3e-15
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 78 1e-14
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 77 3e-14
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 75 1e-13
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 75 1e-13
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 73 6e-13
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 72 7e-13
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 72 1e-12
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 66 4e-11
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 66 5e-11
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 60 2e-09
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai... 58 1e-08
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 54 3e-07
At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase f... 53 5e-07
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 52 6e-07
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 40 0.004
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 40 0.004
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 40 0.004
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 40 0.004
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 40 0.005
At4g22410.1 68417.m03238 ubiquitin carboxyl-terminal hydrolase f... 38 0.011
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 38 0.015
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ... 38 0.019
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 38 0.019
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 36 0.079
At2g12875.1 68415.m01402 hypothetical protein 35 0.10
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 35 0.14
At5g41320.1 68418.m05022 expressed protein 33 0.32
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f... 33 0.32
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 33 0.55
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 33 0.55
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 33 0.55
At4g10470.1 68417.m01719 expressed protein 32 0.73
At1g22060.1 68414.m02759 expressed protein 32 0.97
At5g49880.1 68418.m06177 mitotic checkpoint family protein simil... 31 1.3
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa... 31 2.2
At4g26940.2 68417.m03877 galactosyltransferase family protein co... 31 2.2
At4g26940.1 68417.m03876 galactosyltransferase family protein co... 31 2.2
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 30 3.0
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 30 3.9
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 3.9
At2g29040.1 68415.m03530 exostosin family protein contains Pfam ... 30 3.9
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 29 5.2
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 29 5.2
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont... 29 5.2
At4g02800.1 68417.m00380 expressed protein similar to A. thalian... 29 5.2
At3g29210.1 68416.m03664 hypothetical protein similar to At1g328... 29 5.2
At3g28770.1 68416.m03591 expressed protein 29 5.2
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam... 29 5.2
At1g65440.1 68414.m07424 glycine-rich protein 29 5.2
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 29 5.2
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 29 6.8
At4g35940.1 68417.m05113 expressed protein 29 6.8
At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family... 29 6.8
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 29 6.8
At1g29170.1 68414.m03569 expressed protein ; expression supporte... 29 6.8
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 29 9.0
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 29 9.0
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr... 29 9.0
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 29 9.0
At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein ... 29 9.0
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 29 9.0
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 108 bits (259), Expect = 9e-24
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Query: 328 VALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFR 387
++L CL +F+ E L + +F K+ + +LP++L HLKRF + Y +
Sbjct: 747 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 806
Query: 388 TKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFA--INE 445
K+DT ++FP+ LD+S++V++ + LY+L AV H+G G G GHYTA+A I++
Sbjct: 807 NKIDTFVNFPVHDLDLSKYVKN---KNDQSYLYELYAVSNHYG-GLGGGHYTAYAKLIDD 862
Query: 446 EQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
+W+HF+D V + + + + Y+LFY R
Sbjct: 863 NEWYHFDDSHVSSVNESEIKNSAAYVLFYRR 893
Score = 37.1 bits (82), Expect = 0.026
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQ 260
+ GL NLGNTCFMN+ LQ L + YF Q
Sbjct: 302 LAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQ 333
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 286 DVVMAEELRKVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDC 333
DV + + C ACG S +DPF+ LS+ LP V + C
Sbjct: 449 DVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYC 496
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 108 bits (259), Expect = 9e-24
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Query: 328 VALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFR 387
++L CL +F+ E L + +F K+ + +LP++L HLKRF + Y +
Sbjct: 747 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 806
Query: 388 TKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFA--INE 445
K+DT ++FP+ LD+S++V++ + LY+L AV H+G G G GHYTA+A I++
Sbjct: 807 NKIDTFVNFPVHDLDLSKYVKN---KNDQSYLYELYAVSNHYG-GLGGGHYTAYAKLIDD 862
Query: 446 EQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
+W+HF+D V + + + + Y+LFY R
Sbjct: 863 NEWYHFDDSHVSSVNESEIKNSAAYVLFYRR 893
Score = 37.1 bits (82), Expect = 0.026
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQ 260
+ GL NLGNTCFMN+ LQ L + YF Q
Sbjct: 302 LAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQ 333
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 286 DVVMAEELRKVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDC 333
DV + + C ACG S +DPF+ LS+ LP V + C
Sbjct: 449 DVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYC 496
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 107 bits (258), Expect = 1e-23
Identities = 66/213 (30%), Positives = 115/213 (53%), Gaps = 17/213 (7%)
Query: 274 YHSRSYTRQEMNDVVMAEELRKVRCLACGTESKKYDP-FLDLSLELPEVGRN-------D 325
Y+S + E + VV + KV E +KYD +L+ +LP+V +N
Sbjct: 674 YYSFNLQPLESDSVVNPGSVTKVLVKWNEKEHEKYDSSYLN---DLPKVHKNVLAKKTMQ 730
Query: 326 TPVALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNY 385
++L CL +F+ E L + ++ K+ + +LP++L HLKRF + Y
Sbjct: 731 EGISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 790
Query: 386 FRTKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFA--I 443
F+ K+DT ++F + LD+S++V++ + + LY+L A+ H+G G G GHYTA+A +
Sbjct: 791 FKNKIDTLVNFHIHDLDLSKYVKN---EDGQSYLYELYAISNHYG-GLGGGHYTAYAKLM 846
Query: 444 NEEQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
+E +W++F+D V A + + + Y+LFY R
Sbjct: 847 DETKWYNFDDSRVSAVNESEIKTSAAYVLFYQR 879
Score = 39.1 bits (87), Expect = 0.006
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 212 KDKKRSPSNGKLQREKKVVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQ 260
KD S + GK ++ + + GL+NLGNTCFMN+ LQ L + YF Q
Sbjct: 284 KDDVSSRTFGKGEK-RGLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQ 331
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 286 DVVMAEELRKVRCLACGTESKKYDPFLDLSLELP 319
DV + + C CG S +DPF+ LSL LP
Sbjct: 447 DVFQGQYKSTLVCPDCGKISITFDPFMYLSLPLP 480
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 107 bits (257), Expect = 2e-23
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Query: 328 VALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFR 387
++L CL +F+ E L + +F K+ + +LP++L HLKRF + Y +
Sbjct: 748 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 807
Query: 388 TKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFA--INE 445
K+DT ++FP+ LD+S++V++ + LY+L AV H+G G G GHYTA+A I++
Sbjct: 808 NKIDTFVNFPVHDLDLSKYVKN---KNGQSYLYELYAVSNHYG-GLGGGHYTAYAKLIDD 863
Query: 446 EQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
+W+HF+D V + + + + Y+LFY R
Sbjct: 864 NKWYHFDDSHVSSVNESEIRNSAAYVLFYRR 894
Score = 37.9 bits (84), Expect = 0.015
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 182 ESIRSLRPRSRKRTHSEDSSSTEN-SL--QINRKDKKRSPSNGKLQREKK-VVGLKNLGN 237
E RS+ + T S S+T N SL +I +D R + + EK + GL NLGN
Sbjct: 252 EPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGGLAGLSNLGN 311
Query: 238 TCFMNAVLQSLNNIQEFSCYFNQ 260
TCFMN+ LQ L + YF Q
Sbjct: 312 TCFMNSALQCLAHTPPIVEYFLQ 334
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 286 DVVMAEELRKVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDC 333
DV + + C CG S +DPF+ LS+ LP + + C
Sbjct: 450 DVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYC 497
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 101 bits (243), Expect = 8e-22
Identities = 80/268 (29%), Positives = 134/268 (50%), Gaps = 19/268 (7%)
Query: 214 KKRSPSNGKLQREKKVVGLKNL--GNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKANGR 271
++RS + E KV GLK N+ + A SL I E + N LP E +A
Sbjct: 664 ERRSARFNNTEEEDKVGGLKKAKKSNSSDLGASKLSLQLIDEDNKTIN-LPDNEAEA--M 720
Query: 272 KVYHSRSYTRQEMNDVVMAEELRKVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALS 331
K+ S + T ++ + + CL E KY P + R++ P++L
Sbjct: 721 KLPSSATVTIY-LDWTPELSGMYDITCLESLPEVLKYGP-------TTKKARSE-PLSLY 771
Query: 332 DCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVD 391
CL +F++ E L E +F +K+ + RLP VL +HLKRF + + K++
Sbjct: 772 ACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLE 831
Query: 392 TSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAF--AINEEQWF 449
T ++FP+ LD++++V + ++ LY+L A+ H+G G GSGHYTA +++ +W+
Sbjct: 832 TFVNFPIHDLDLTKYVANKNLSQPQ--LYELYALTNHYG-GMGSGHYTAHIKLLDDSRWY 888
Query: 450 HFNDHTVRAADSHAVASCKPYILFYIRR 477
+F+D + + V S Y+LFY R+
Sbjct: 889 NFDDSHISHINEDDVKSGAAYVLFYRRK 916
Score = 42.3 bits (95), Expect = 7e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQ 260
+ GL NLGNTCFMN+ +Q L + EF+ YF +
Sbjct: 316 LTGLLNLGNTCFMNSAIQCLVHTPEFASYFQE 347
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 92.3 bits (219), Expect = 6e-19
Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 16/223 (7%)
Query: 255 SCYFNQLPSLEMKANGRKVYHSRSYTRQEMNDVVMAEELRKVRCLACGTESKKYDPFLDL 314
+C+ L +++ NG + ++ S ++ + ++ V+CL+CG ES K D +D+
Sbjct: 127 ACHNTSLRLKKLRYNGNEPFNGNSVVKEIFGGALQSQ----VKCLSCGAESNKADEIMDI 182
Query: 315 SLELPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLC 374
SLE+ + ++ + L F Q E L +Y KQ I + PN+L
Sbjct: 183 SLEILQSS------SVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILV 236
Query: 375 LHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAG 434
+ LKRF F K+D +ISF L +S F+ + Y L +IVH G
Sbjct: 237 IQLKRF--GGIFGGKIDKAISFG-EILVLSNFMSKASKDPQPE--YKLFGIIVHSGFSPE 291
Query: 435 SGHYTAFAINE-EQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
SGHY A+ + +W+ ND V + V S K YILF+ R
Sbjct: 292 SGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSR 334
Score = 35.5 bits (78), Expect = 0.079
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 224 QREKKVVGLKNLGNTCFMNAVLQSL 248
+R +GL+NLGNTC++N+VLQ L
Sbjct: 18 RRNGPPLGLRNLGNTCYLNSVLQCL 42
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 91.5 bits (217), Expect = 1e-18
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 14/203 (6%)
Query: 276 SRSYTRQEMNDVVMAEELRKVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLA 335
S +Y R ++ + +V+C C S K+DPFLDLSL++ + +L L+
Sbjct: 219 SDAYRRSLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKAD------SLQRALS 272
Query: 336 SFVQVEELADTER-YFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSI 394
F VE L + + Y KQ + + P VL +HLKRF H K+D +
Sbjct: 273 RFTAVELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRFEAHR--SEKIDRKV 330
Query: 395 SFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFA-INEEQWFHFND 453
F A+D+ FV L Y L V+VH+G + SGHY F + W+ +D
Sbjct: 331 DF-TSAIDMKPFVSGPHEGN---LKYTLYGVLVHYGRSSHSGHYACFVRTSSGMWYSLDD 386
Query: 454 HTVRAADSHAVASCKPYILFYIR 476
+ V V + K Y+LFY+R
Sbjct: 387 NRVVQVSEKTVFNQKAYMLFYVR 409
Score = 35.5 bits (78), Expect = 0.079
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 231 GLKNLGNTCFMNAVLQSL 248
GL+NLGNTCF+N+VLQ L
Sbjct: 108 GLQNLGNTCFLNSVLQCL 125
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 87.8 bits (208), Expect = 1e-17
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 11/192 (5%)
Query: 286 DVVMAEELRKVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLASFVQVEELAD 345
DV + +RC C S+ Y+ + LSLE+ +V DT L L SF +VE+L
Sbjct: 294 DVFSGRLISGLRCCNCDYVSETYEKSVGLSLEIEDV---DT---LGSALESFTRVEKL-- 345
Query: 346 TERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSR 405
E+ KQ + +LP V HLKRF+ + + K+ + PL +D+
Sbjct: 346 DEQLTCDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHVKIPLE-IDLQP 404
Query: 406 FVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFAINEEQ-WFHFNDHTVRAADSHAV 464
++R+++ E Y L A++ H G GHY+++ + + W HF+D V D V
Sbjct: 405 YMRNIQENEVSTK-YHLYALVEHFGYSVAYGHYSSYVRSAPKIWHHFDDSKVTRIDEDMV 463
Query: 465 ASCKPYILFYIR 476
S YILFY R
Sbjct: 464 LSQDSYILFYAR 475
Score = 30.7 bits (66), Expect = 2.2
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 173 LDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQREKKVV-- 230
+D I G ++ + RP + + S +++ N K++ R ++E + V
Sbjct: 114 IDDDIWGDDDLPETRRPWTPNVSPGFGSDDDDDNDDDNSKNEPRKSLFYGFRQEPEPVTG 173
Query: 231 ---GLKNLGNTCFMNAVLQ 246
GL NLGN+CF+N+V Q
Sbjct: 174 VGAGLWNLGNSCFLNSVFQ 192
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 85.8 bits (203), Expect = 6e-17
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 318 LPEVGRNDTP-----VALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNV 372
LPEV ++ T V+L CL +F+ E L + ++ K+ + RLP +
Sbjct: 458 LPEVSKSGTKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEI 517
Query: 373 LCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSG 432
L +HLKRF + + + K++ + FPL LD+S ++ + Y L A+ H+GS
Sbjct: 518 LVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYIS--YKNGQTTYRYMLYAISNHYGS- 574
Query: 433 AGSGHYTAFAIN-EEQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
G GHYTA+ + ++W+ F+D V + + Y+LFY R
Sbjct: 575 MGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKR 619
Score = 35.5 bits (78), Expect = 0.079
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCYF 258
+ GL+NLGNTCFMN+ LQ L + + +F
Sbjct: 29 LTGLQNLGNTCFMNSSLQCLAHTPKLVDFF 58
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 85.8 bits (203), Expect = 6e-17
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 318 LPEVGRNDTP-----VALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNV 372
LPEV ++ T V+L CL +F+ E L + ++ K+ + RLP +
Sbjct: 458 LPEVSKSGTKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEI 517
Query: 373 LCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSG 432
L +HLKRF + + + K++ + FPL LD+S ++ + Y L A+ H+GS
Sbjct: 518 LVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYIS--YKNGQTTYRYMLYAISNHYGS- 574
Query: 433 AGSGHYTAFAIN-EEQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
G GHYTA+ + ++W+ F+D V + + Y+LFY R
Sbjct: 575 MGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKR 619
Score = 35.5 bits (78), Expect = 0.079
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCYF 258
+ GL+NLGNTCFMN+ LQ L + + +F
Sbjct: 29 LTGLQNLGNTCFMNSSLQCLAHTPKLVDFF 58
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 85.8 bits (203), Expect = 6e-17
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 19/209 (9%)
Query: 263 SLEMKANGRKVYHSRSYTRQE-----MNDVVMAEELRKVRCLACGTESKKYDPFLDLSLE 317
S E ANG KV + +E ++++ + RCL C T + + + FLDLSL+
Sbjct: 146 SPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGILTNETRCLRCETVTARDETFLDLSLD 205
Query: 318 LPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHL 377
+ + +++ CL +F E L +++F K+ I++ P++L +HL
Sbjct: 206 IEQNS------SITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHL 259
Query: 378 KRFRWHNYFRT--KVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGS 435
KRF++ K+ + FPL L +S V E Y L AV+VH GSG
Sbjct: 260 KRFKYIEQLGRYKKLSYRVVFPLE-LKLSNTVEPYADVE-----YSLFAVVVHVGSGPNH 313
Query: 436 GHYTAFAINEEQWFHFNDHTVRAADSHAV 464
GHY + + W F+D V + AV
Sbjct: 314 GHYVSLVKSHNHWLFFDDENVEMIEESAV 342
Score = 31.1 bits (67), Expect = 1.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 227 KKVVGLKNLGNTCFMNAVLQSL 248
++ G +N GNTC+ N+VLQ+L
Sbjct: 20 ERYFGFENFGNTCYCNSVLQAL 41
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 83.4 bits (197), Expect = 3e-16
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 14/172 (8%)
Query: 295 KVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXX 354
+ RCL C T + + + FLDLSL++ + +++ CL +F E L +++F
Sbjct: 178 ETRCLRCETVTARDETFLDLSLDIEQNS------SITSCLKNFSSTETLHAEDKFFCDKC 231
Query: 355 XXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRT--KVDTSISFPLRALDVSRFVRDVRR 412
K+ I++ P++L +HLKRF++ K+ + FPL L +S V
Sbjct: 232 CSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLE-LKLSNTVD---- 286
Query: 413 AEHDALLYDLAAVIVHHGSGAGSGHYTAFAINEEQWFHFNDHTVRAADSHAV 464
E+ + Y L AV+VH GSG GHY + + W F+D +V + AV
Sbjct: 287 -EYVDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDESVEIIEESAV 337
Score = 31.1 bits (67), Expect = 1.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 227 KKVVGLKNLGNTCFMNAVLQSL 248
++ G +N GNTC+ N+VLQ+L
Sbjct: 20 ERYFGFENFGNTCYCNSVLQAL 41
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 80.2 bits (189), Expect = 3e-15
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 295 KVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXX 354
K++C+ C +S+ + +DL++E+ G T L D L F + E L +Y
Sbjct: 674 KIKCMKCQVKSELREKMMDLTVEID--GDIST---LDDALRRFTRTEILDGENKYRCGSC 728
Query: 355 XXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAE 414
K+ I PNVL + LKRF+ + K++ I FP LD++ +V
Sbjct: 729 KSYERAKKKLKITEPPNVLTIALKRFQAGKF--GKLNKLIRFP-ETLDLAPYVSGGSEKS 785
Query: 415 HDALLYDLAAVIVHHG--SGAGSGHYTAFAINEEQWFHFNDHTVRAADSHAVASCKPYIL 472
HD Y L VIVH + A SGHY + N+ +W+ +D TV +D + + Y+L
Sbjct: 786 HD---YKLYGVIVHLDVMNAAFSGHYVCYIRNQNKWYKADDSTVVTSDVERILTKGAYML 842
Query: 473 FYIR 476
FY R
Sbjct: 843 FYAR 846
Score = 30.7 bits (66), Expect = 2.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 231 GLKNLGNTCFMNAVLQSLNNIQEFSCYFNQ 260
GL N+GN+CF N V Q L + YF Q
Sbjct: 543 GLINVGNSCFANVVFQCLMFTPPLTTYFLQ 572
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 77.8 bits (183), Expect = 1e-14
Identities = 60/185 (32%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 295 KVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXX 354
KV+CL C ES++Y+ +DL+LE+ G + +L D L F + E+L Y
Sbjct: 570 KVKCLRCDHESERYENIMDLTLEI--YGWVE---SLQDALTQFTRPEDLDGENMYRCSRC 624
Query: 355 XXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAE 414
K+ I PN+L + LKRF+ Y K++ ISFP LD+ F + R
Sbjct: 625 AGYVRARKELSIHEAPNILTIVLKRFQEGRY--GKINKCISFP-EMLDMIPF---MTRTG 678
Query: 415 HDALLYDLAAVIVHHG--SGAGSGHYTAFAIN-EEQWFHFNDHTVRAADSHAVASCKPYI 471
LY L AVIVH + + SGHY ++ + W+ +D + V S Y+
Sbjct: 679 DVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYM 738
Query: 472 LFYIR 476
LFY+R
Sbjct: 739 LFYMR 743
Score = 31.9 bits (69), Expect = 0.97
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 231 GLKNLGNTCFMNAVLQSLNNIQEFSCY 257
GL N GN+C+ NAVLQSL + Y
Sbjct: 439 GLVNCGNSCYANAVLQSLTCTKPLVAY 465
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 77.0 bits (181), Expect = 3e-14
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 295 KVRCLACGTESKKYDPFLDLSLELP-EVGRNDTPVALSDCLASFVQVEELADTERYFXXX 353
K++C+AC +S++ + +DL++E+ ++G +L + LA F E L RYF
Sbjct: 458 KIKCMACLHKSERPELMMDLTVEIDGDIG------SLEEALAQFTAYEVLDGENRYFCGR 511
Query: 354 XXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRA 413
K+ I PN+L + LKRF+ N+ K+ I FP LD+S ++ D
Sbjct: 512 CKSYQKAKKKLMILEGPNILTVVLKRFQSDNF--GKLSKPIHFP-ELLDISPYMSDPNHG 568
Query: 414 EHDALLYDLAAVIVHHG--SGAGSGHYTAFAIN-EEQWFHFNDHTVRAADSHAVASCKPY 470
+H +Y L AV+VH S SGHY + + WF +D V V Y
Sbjct: 569 DHP--VYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNVFPVQLETVLLEGAY 626
Query: 471 ILFYIR 476
+L Y R
Sbjct: 627 MLLYAR 632
Score = 33.5 bits (73), Expect = 0.32
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 89 TENNIDKXXXXXXXXXXXNDEKQNSREKQEDSRQDEDDCDANIPG-LVTAPDDIVLNVIE 147
+ N DK D K Q +SR+ D + +I ++ + +N ++
Sbjct: 181 SRNRTDKVESASNYSKGKTDAKLRKLGNQ-NSRRSGDSANMSISDQFLSVGFEEEMNALK 239
Query: 148 GD-IAVQPTSSSLDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRT-HSEDSSSTEN 205
+ I +P+S+S S+ SK + K ++ S L+ +K H S++
Sbjct: 240 HERITSEPSSASAAMSSSSTLLLPSKANSKPKVSQASSSGLKTSVQKVVQHFRPPQSSKK 299
Query: 206 SLQINRKDKKRSPSN--GKL---QREKKVVGLKNLGNTCFMNAVLQSL 248
S + D+ KL + E + GL NLGN+C+ NAVLQ L
Sbjct: 300 SQPSSSIDEMSFSYELFVKLYCDRVELQPFGLVNLGNSCYANAVLQCL 347
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 74.5 bits (175), Expect = 1e-13
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 12/208 (5%)
Query: 269 NGRKVYHSRSYTRQEMNDVVMAEELRKVRCLACGTE-SKKYDPFLDLSLELPEVGRNDTP 327
N V ++S+ E++++ +L+ V A GT+ S P+L L L++ D
Sbjct: 351 NKSAVTRTQSFVPSELSEI-FGGQLKSV-VKAKGTKASATVQPYLLLHLDI----HPDGV 404
Query: 328 VALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFR 387
+ D L F E+L + R +K I++L ++ LHL RF + +
Sbjct: 405 QGIEDALHLFSAQEDL-EGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGS 463
Query: 388 TKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFAINEE- 446
TK+ + FPL L+++R + +++L Y+L A I HHG GHYT A +
Sbjct: 464 TKLRKGVKFPLE-LNLNR--SHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNG 520
Query: 447 QWFHFNDHTVRAADSHAVASCKPYILFY 474
QW F+D +V + V + Y+LFY
Sbjct: 521 QWLRFDDASVTPIGTKLVLHDQAYVLFY 548
Score = 41.5 bits (93), Expect = 0.001
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 120 SRQDEDDCDANIP--GLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCI 177
S +D DA +P + P+ +V N I +I+ ++ SL+ + ++ LD
Sbjct: 85 SSDKNNDSDAKLPRKNSLRVPEHVVQNGIIKEIS--ESNKSLN-NGVAVKTDPIGLDNLS 141
Query: 178 KGTEESIRSLRPRSRK--RTHSEDSSSTENSLQINRKDKKRSPSNGKLQ-REKKVVGLKN 234
ES + S K +ED SS +S I RK + P+ ++ GL N
Sbjct: 142 MSDGESDPVYKASSSKFQALDNEDFSSDSSSGSIQRKKNLKVPTESVPPVKDFTPRGLIN 201
Query: 235 LGNTCFMNAVLQSLNNIQEF 254
GN CF+NA LQ+L + F
Sbjct: 202 AGNLCFLNATLQALLSCSPF 221
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 74.5 bits (175), Expect = 1e-13
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 12/208 (5%)
Query: 269 NGRKVYHSRSYTRQEMNDVVMAEELRKVRCLACGTE-SKKYDPFLDLSLELPEVGRNDTP 327
N V ++S+ E++++ +L+ V A GT+ S P+L L L++ D
Sbjct: 351 NKSAVTRTQSFVPSELSEI-FGGQLKSV-VKAKGTKASATVQPYLLLHLDI----HPDGV 404
Query: 328 VALSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFR 387
+ D L F E+L + R +K I++L ++ LHL RF + +
Sbjct: 405 QGIEDALHLFSAQEDL-EGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGS 463
Query: 388 TKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFAINEE- 446
TK+ + FPL L+++R + +++L Y+L A I HHG GHYT A +
Sbjct: 464 TKLRKGVKFPLE-LNLNR--SHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNG 520
Query: 447 QWFHFNDHTVRAADSHAVASCKPYILFY 474
QW F+D +V + V + Y+LFY
Sbjct: 521 QWLRFDDASVTPIGTKLVLHDQAYVLFY 548
Score = 41.5 bits (93), Expect = 0.001
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 120 SRQDEDDCDANIP--GLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCI 177
S +D DA +P + P+ +V N I +I+ ++ SL+ + ++ LD
Sbjct: 85 SSDKNNDSDAKLPRKNSLRVPEHVVQNGIIKEIS--ESNKSLN-NGVAVKTDPIGLDNLS 141
Query: 178 KGTEESIRSLRPRSRK--RTHSEDSSSTENSLQINRKDKKRSPSNGKLQ-REKKVVGLKN 234
ES + S K +ED SS +S I RK + P+ ++ GL N
Sbjct: 142 MSDGESDPVYKASSSKFQALDNEDFSSDSSSGSIQRKKNLKVPTESVPPVKDFTPRGLIN 201
Query: 235 LGNTCFMNAVLQSLNNIQEF 254
GN CF+NA LQ+L + F
Sbjct: 202 AGNLCFLNATLQALLSCSPF 221
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 72.5 bits (170), Expect = 6e-13
Identities = 59/180 (32%), Positives = 77/180 (42%), Gaps = 11/180 (6%)
Query: 298 CLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXXXXX 357
C C + S ++P L SLE+ +V L L SF VE+L D +
Sbjct: 299 CCNCNSVSNTFEPSLGWSLEIEDVN------TLWKALESFTCVEKLED--QLTCDNCKEK 350
Query: 358 XXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAEHDA 417
KQ +LP V HLKRF K+ I FPL LD+S F+ E
Sbjct: 351 VTKEKQLRFDKLPPVATFHLKRFTNDGVTMEKIFDHIEFPLE-LDLSPFMSSNHDPEVST 409
Query: 418 LLYDLAAVIVHHGSGAGSGHYTAFAIN-EEQWFHFNDHTVRAADSHAVASCKPYILFYIR 476
Y L A + H G A GHY+++ + E W +F+D V V S YILFY R
Sbjct: 410 R-YHLYAFVEHIGIRATFGHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFYAR 468
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 72.1 bits (169), Expect = 7e-13
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 13/191 (6%)
Query: 271 RKVYHSRSYTRQEMNDVVMAEELRKVRCLACGTESKKYDPFLDL-SLELPEVGRNDTPVA 329
R + HS + + D+ C CG +S+ D +LEL G +
Sbjct: 198 RCLLHSGVKAKTIVQDLFSGSVSHVTTCSKCGRDSEASSKMEDFYALELNVKGLKSLDAS 257
Query: 330 LSDCLASFVQVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKR--FRWHNYFR 387
L+D ++ +E+L +YF T+ +R LP V+ LKR F +
Sbjct: 258 LND----YLSLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVITFQLKRCIFLPKTTAK 313
Query: 388 TKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFAINEEQ 447
K+ +S SFP + LD+ + + + + L YDL+AV++H GS SGHY A +E+
Sbjct: 314 KKITSSFSFP-QVLDMGSRLAE---SSQNKLTYDLSAVLIHKGSAVNSGHYVAHIKDEKT 369
Query: 448 --WFHFNDHTV 456
W+ F+D V
Sbjct: 370 GLWWEFDDEHV 380
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 218 PSNGKLQREKKVVGLKNLGNTCFMNAVLQSL 248
P+ + E GL NLG TC+ N++LQ L
Sbjct: 94 PTLDRRDSESTPAGLTNLGATCYANSILQCL 124
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 71.7 bits (168), Expect = 1e-12
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 44/220 (20%)
Query: 296 VRCLACGTESKKYDPFLDLSLELPEVGR-----------------NDTPVALSDCLASFV 338
V C CG+ S YDPF+D+SL L + N LS CL F
Sbjct: 312 VTCTTCGSTSTTYDPFIDISLTLDSMNGFSPADCRKNRYSGGPSVNAIMPTLSGCLDFFT 371
Query: 339 QVEELADTERYFXXXXXXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFR---TKVDTSIS 395
+ E+L ++ +KQ IRRLP +LCLH+KRF H+ R K+D+ +
Sbjct: 372 RSEKLGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFE-HSLTRKTSRKIDSYLQ 430
Query: 396 FPLRALDVSRFVR---------------------DVRRAEHDALLYDLAAVIVHHGSGAG 434
+P R L++S ++ D + + +++ AV+ H G
Sbjct: 431 YPFR-LNMSPYLSSSIIGKRFGNRIFAFDGEGEYDSSSSSSPSAEFEIFAVVTHKGM-LE 488
Query: 435 SGHYTAFAINEEQWFHFNDHTVRAADSHAVASCKPYILFY 474
SGHY + + W+ +D + + V C+ Y+LFY
Sbjct: 489 SGHYVTYLRLKGLWYRCDDAWINEVEEEVVRGCECYMLFY 528
Score = 37.5 bits (83), Expect = 0.019
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 28 CSECSVPEQN-WLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDDYI 85
CS CSV ++ ++CL C ++C ++ H + + GH + I + +YC C D +
Sbjct: 56 CSYCSVYQKRLYICLICRSISCSSHILLHTQLNK---GHDIAIDVERSELYCCACIDQV 111
Score = 36.3 bits (80), Expect = 0.045
Identities = 15/18 (83%), Positives = 17/18 (94%)
Query: 231 GLKNLGNTCFMNAVLQSL 248
GL NLG+TCFMNAVLQ+L
Sbjct: 178 GLNNLGSTCFMNAVLQAL 195
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 66.5 bits (155), Expect = 4e-11
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 295 KVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXX 354
+V+C AC S +Y+ +DL++E+ + V+L +CL F E L Y
Sbjct: 306 QVQCTACSNVSDQYENMMDLTVEI-----HGDAVSLEECLDQFTAKEWLQGDNLYKCDRC 360
Query: 355 XXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAE 414
K+ IR PN+L + LKRF+ + K++ ISFP D+ ++
Sbjct: 361 DDYVKACKRLSIRCAPNILTIALKRFQGGRF--GKLNKRISFP-ETFDLGPYMSG---GG 414
Query: 415 HDALLYDLAAVIVHHG--SGAGSGHYTAFAIN-EEQWFHFNDHTVRAADSHAVASCKPYI 471
+ +Y L AVIVH + + GHY + + W+ +D V + V S + Y+
Sbjct: 415 EGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAYM 474
Query: 472 LFYIR 476
L Y R
Sbjct: 475 LLYSR 479
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 231 GLKNLGNTCFMNAVLQSLN 249
GL N GN+CF N VLQ L+
Sbjct: 175 GLTNCGNSCFANVVLQCLS 193
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 66.1 bits (154), Expect = 5e-11
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 295 KVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSDCLASFVQVEELADTERYFXXXX 354
+V+C C S +Y+ +DL +E+ + +L +CL F E L Y
Sbjct: 300 QVQCTVCNHVSDQYENMMDLIVEM-----HGDAGSLEECLDQFTAEEWLHGDNMYKCDRC 354
Query: 355 XXXXXXTKQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRAE 414
K+ IRR PN+L + LKR++ Y K++ ISFP LD++ ++ +
Sbjct: 355 SDYVKACKRLTIRRAPNILTIALKRYQGGRY--GKLNKRISFP-ETLDLNPYMSE---GG 408
Query: 415 HDALLYDLAAVIVHHG--SGAGSGHYTAFAINE-EQWFHFNDHTVRAADSHAVASCKPYI 471
+ +Y L AVIVH + + GHY + + W+ +D + + + V S + Y+
Sbjct: 409 DGSDVYKLYAVIVHLDMLNASFFGHYICYIKDFCGNWYRIDDSEIESVELEDVLSQRAYM 468
Query: 472 LFYIR 476
L Y R
Sbjct: 469 LLYSR 473
Score = 29.5 bits (63), Expect = 5.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 231 GLKNLGNTCFMNAVLQSLN 249
GL N GN+CF N +LQ L+
Sbjct: 169 GLMNCGNSCFANVILQCLS 187
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 60.5 bits (140), Expect = 2e-09
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 9/208 (4%)
Query: 24 KNFSCSECSVPEQNWLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDD 83
+N C C E W+C+ CGVV CGRY GHA+ H + H + + V+ Y D+
Sbjct: 214 ENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGDN 273
Query: 84 YIINDTENNIDKXXXXXXXXXXXNDEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVL 143
Y+ ++ D + + S E D DA + V + +L
Sbjct: 274 YVHRLIQSKTDGKLVELNSHGSLSKDGCGSCE-----YSDSGMTDALLNSKVDMYFEKLL 328
Query: 144 NVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSST 203
++ + + + ++ S ++ ++ D+C+K + L + ++D ST
Sbjct: 329 QNVKEETEQKISEAASKAISQRLQKLQTRFDRCVKEKQ----FLEDLNENLVKNKDVWST 384
Query: 204 ENSLQINRKDKKRSPSNGKLQREKKVVG 231
+ + R+ K + K+Q ++ +G
Sbjct: 385 KITEMKEREKKAVRAKDEKIQGLEEQLG 412
>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
domain-containing protein similar to BRCA1-associated
protein 2 [Homo sapiens] GI:3252872; contains Pfam
profile PF02148: Zn-finger in ubiquitin-hydrolases and
other protein
Length = 488
Score = 58.0 bits (134), Expect = 1e-08
Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 6/209 (2%)
Query: 27 SCSECSVPEQNWLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDDYII 86
+CS C E W CL CG V CGRY GH+ H H + ++ Y D Y+
Sbjct: 224 NCSICGKTENVWACLVCGFVGCGRYKEGHSIRHWKETHHCYSLDLRTQQIWDYVGDSYVH 283
Query: 87 NDTENNIDKXXXXXXXXXXXNDEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVI 146
+ ID + E ED+ ++ + +V +D++ + +
Sbjct: 284 RLNHSKIDGKSVEMSTSCLSHQGDCGLCECSEDTGISGAIFNSKVDSIVIEYNDLLASQL 343
Query: 147 EGDIAVQPTSSSLDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTE-N 205
+G S ++ S + + +++ + T + +++ ++ E S TE N
Sbjct: 344 KGQRQYY-ESLIVEARSKQESSIAEAVEQIVVNTMQELQN----KIEKCEEEKSGITEVN 398
Query: 206 SLQINRKDKKRSPSNGKLQREKKVVGLKN 234
+ I +D R + +RE ++G K+
Sbjct: 399 TKLIKEQDTWRKKAKEIEEREAALLGSKD 427
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 53.6 bits (123), Expect = 3e-07
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 362 KQFWIRRLPNVLCLHLKRFRWHNYFR-TKVDTSISFPLRALDVSRFVRDVRRAEHDALLY 420
K+ I + P VL +HLKRF R +K+ + F +D+S+++ D R +E D +Y
Sbjct: 956 KKVLINKAPPVLTIHLKRFSQDARGRVSKLSGHVDFQ-EFIDLSKYM-DTRCSEEDEPVY 1013
Query: 421 DLAAVIVHHGSGAGSGHYTAFAI--------------NEEQWFHFNDHTVRAADSHAVAS 466
LA ++ H G+ GHY ++ N W+H +D VR A V
Sbjct: 1014 RLAGLVEHLGA-MSRGHYVSYIRGGHKERRDSDTKEPNSSIWYHASDSQVRPASLEEVLR 1072
Query: 467 CKPYILFYIR 476
+ YILFY R
Sbjct: 1073 SEAYILFYER 1082
Score = 41.5 bits (93), Expect = 0.001
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 263 SLEMKANGRKVYHSRSYTRQEMNDVVMAEELRK-VRCLACGTESKKYDPFLDLSLELPEV 321
SL K S +Y + + D V E+ V CL CG SK Y+PF+DLSL +P +
Sbjct: 304 SLRKKLGVSDSNDSSTYQKPTLIDSVFGGEISSTVSCLECGHFSKVYEPFMDLSLPVPSM 363
Score = 40.7 bits (91), Expect = 0.002
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 38 WLCLHCGVVNCG-----RYVNGHAKNHADTLGHQLCISCDAYSV-YCYKCDDYIINDTEN 91
WLCL CG CG H H H+L I C + +C+ C + D E
Sbjct: 93 WLCLECGYYVCGDVGLPTEAQSHVMGHNRLTRHRLVIQCKNPQLRWCFSCQSLLPFDNEE 152
Query: 92 NIDKXXXXXXXXXXXNDEKQNSREKQEDSRQDEDDCDANIPGLVTAPD 139
N +K + N+ S + E C +I G + A D
Sbjct: 153 NGEKKDLLLEVVKLIRERSPNT---YSASFETEFSCSGSIYGGIEARD 197
Score = 35.9 bits (79), Expect = 0.059
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCYF 258
V GL NLGNTCF N+V+Q+L ++ + +F
Sbjct: 201 VRGLVNLGNTCFFNSVMQNLLSLDQLREHF 230
>At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase
family protein similar to U4/U6.U5 tri-snRNP-associated
65 kDa protein [Homo sapiens] GI:13926071; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 510
Score = 52.8 bits (121), Expect = 5e-07
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 302 GTESKKYD--PFLDLSLELPEVGRNDTPVALSDCLA-SFVQVEELADTERYFXXXXXXXX 358
G E+K+ PFL L L+LP P D + + + L D + F
Sbjct: 328 GNENKEISRMPFLMLGLDLPP------PPLFKDVMEKNIIPQVALFDLLKKFDGETVTEV 381
Query: 359 XXTK----QFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRFVRDVRRA- 413
K ++ + + P L H+ RF+ +N+F+ K T ++FP++ +++ ++ + RA
Sbjct: 382 VRPKLARMRYRVIKSPRYLMFHMVRFKKNNFFKEKNPTLVNFPVKDMELRDYIPSLPRAP 441
Query: 414 --EHDALLYDLAAVIVHHGSGAGSGHYTAFA--INEEQWFHFNDHTVRAADSHAVASCKP 469
E+ Y+L A IVH G G++ F ++E W+ D V V +
Sbjct: 442 EGENVCSKYNLIANIVHDGK-PEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVELSEA 500
Query: 470 YILFYIRRE 478
Y+ Y ++E
Sbjct: 501 YMQIYEQQE 509
Score = 38.3 bits (85), Expect = 0.011
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 31 CSVPEQN---WLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDDYIIN 87
CSV N + CL CG GR HA H+ GH + I+ VYC D Y IN
Sbjct: 99 CSVSLSNLNVYACLVCGKYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYCLP-DSYEIN 157
Query: 88 D 88
D
Sbjct: 158 D 158
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 52.4 bits (120), Expect = 6e-07
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 14/127 (11%)
Query: 361 TKQFWIRRLPNVLCLHLKRFRWHNYFR-TKVDTSISFPLRALDVSRFVRDVRRAEHDALL 419
TK+ I + P VL +HLKRF R +K++ ++F +D+ +++ D R + D +
Sbjct: 833 TKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFK-EVIDLRQYM-DSRCSGEDPPV 890
Query: 420 YDLAAVIVHHGSGAGSGHYTAFAINEEQ----------WFHFNDHTVRAADSHAVASCKP 469
Y LA ++ H G+ G GHY A+ ++ W++ +D VR V +
Sbjct: 891 YRLAGLVEHSGTMRG-GHYVAYVRGGQRVKETDSSSTAWYNVSDAYVRQVSLEKVLHSEA 949
Query: 470 YILFYIR 476
YILFY R
Sbjct: 950 YILFYER 956
Score = 37.9 bits (84), Expect = 0.015
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 296 VRCLACGTESKKYDPFLDLSLELP 319
V C+ CG SK Y+PFLDLSL +P
Sbjct: 363 VSCMECGHSSKVYEPFLDLSLPVP 386
Score = 36.7 bits (81), Expect = 0.034
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 16 KVEDTKITKNFSCSEC-SVPEQNWLCLHCGVVNCG--RYVNG---HAKNHADTLGHQLCI 69
K + +K K+FS S+ S + WLCL CG CG NG H H+ H+L I
Sbjct: 88 KAKGSKGKKDFSSSDPKSNNKAIWLCLECGCYVCGGVGLPNGPQSHVLRHSRVTRHRLVI 147
Query: 70 SCDAYSV-YCYKCDDYIINDTENNIDK 95
+ + +C+ C + + E+N +K
Sbjct: 148 QWENPQLRWCFPCQLLLPVEKEDNGEK 174
Score = 36.7 bits (81), Expect = 0.034
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 182 ESIRSLRPRSRKRTHS---EDSSSTENSLQINRKDKKRSPSNGKLQREKKVVGLKNLGNT 238
E ++ ++ RS S ED S S+ + K + S+ + + V GL NLGNT
Sbjct: 180 EVVKLIKGRSLNNLASSDIEDQCSGSGSITSDIKLEGAVTSDIEARDGYVVRGLVNLGNT 239
Query: 239 CFMNAVLQSLNNIQEFSCYF 258
CF N+++Q+L ++ +F
Sbjct: 240 CFFNSIMQNLLSLDRLRDHF 259
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 224 QREKKVVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKANGRKV---YHSRSYT 280
++E VGLKN G TC+MN++LQ+L +I F +P+ E A + S Y
Sbjct: 192 KKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYK 251
Query: 281 RQEMNDVVMAEELRK 295
Q + V +EL K
Sbjct: 252 LQYNDTSVATKELTK 266
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 224 QREKKVVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKANGRKV---YHSRSYT 280
++E VGLKN G TC+MN++LQ+L +I F +P+ E A + S Y
Sbjct: 193 KKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYK 252
Query: 281 RQEMNDVVMAEELRK 295
Q + V +EL K
Sbjct: 253 LQYNDTSVATKELTK 267
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 39.9 bits (89), Expect = 0.004
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 363 QFWIRRLPNVLCLHLKRFRWHNYFRTKVDT-----------SISFPLRALDVSRFVRDVR 411
++ + + P L H+ RF+ +N+F+ K T +++FP++ +++ ++ +
Sbjct: 843 RYRVIKSPRYLMFHMVRFKKNNFFKEKNPTLGSLMPIFSYATVNFPVKDMELRDYIPSLP 902
Query: 412 RA---EHDALLYDLAAVIVHHGSGAGSGHYTAFA--INEEQWFHFNDHTVRAADSHAVAS 466
RA E+ Y+L A IVH G G++ F ++E W+ D V V
Sbjct: 903 RAPEGENVCSKYNLIANIVHDGK-PEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVEL 961
Query: 467 CKPYILFYIRRE 478
+ Y+ Y + E
Sbjct: 962 SEAYMQIYEQEE 973
Score = 38.3 bits (85), Expect = 0.011
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 31 CSVPEQN---WLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDDYIIN 87
CSV N + CL CG GR HA H+ GH + I+ VYC D Y IN
Sbjct: 561 CSVSLSNLNVYACLVCGKYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYCLP-DSYEIN 619
Query: 88 D 88
D
Sbjct: 620 D 620
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 224 QREKKVVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKANGRKV---YHSRSYT 280
++E VGLKN G TC+MN++LQ+L +I F +P+ E A + S Y
Sbjct: 192 KKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYK 251
Query: 281 RQEMNDVVMAEELRK 295
Q + V +EL K
Sbjct: 252 LQYNDTSVATKELTK 266
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 415 HDALLYDLAAVIVHHGSGAGSGHYTAFAINEE-QWFHFND 453
H +YDL AV+ H G A SGHY A+ E +W ++D
Sbjct: 408 HMTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIQYDD 447
Score = 35.1 bits (77), Expect = 0.10
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 231 GLKNLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKAN 269
GL NLGNTC+MN+ +Q L ++ E + SL ++N
Sbjct: 105 GLVNLGNTCYMNSTVQCLKSVPELKSALSNY-SLAARSN 142
>At4g22410.1 68417.m03238 ubiquitin carboxyl-terminal hydrolase
family protein similar to U4/U6.U5 tri-snRNP-associated
65 kDa protein [Homo sapiens] GI:13926071; contains
Pfam profile PF00443: Ubiquitin carboxyl-terminal
hydrolase
Length = 340
Score = 38.3 bits (85), Expect = 0.011
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 31 CSVPEQN---WLCLHCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSVYCYKCDDYIIN 87
CSV N + CL CG GR HA H+ GH + I+ VYC D Y IN
Sbjct: 15 CSVSLSNLNVYACLVCGKYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYCLP-DSYEIN 73
Query: 88 D 88
D
Sbjct: 74 D 74
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 37.9 bits (84), Expect = 0.015
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 415 HDALLYDLAAVIVHHGSGAGSGHYTAFAINEE-QWFHFND 453
H +YDL +V+ H G A SGHY A+ E +W ++D
Sbjct: 458 HMTGIYDLVSVLTHKGRSADSGHYVAWVKQESGKWVQYDD 497
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 231 GLKNLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMK 267
GL NLGNTC+MN+ +Q L ++ E + S K
Sbjct: 160 GLVNLGNTCYMNSTMQCLISVPELKSELSNYQSARTK 196
>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 361
Score = 37.5 bits (83), Expect = 0.019
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCY 257
V GL+NLGN CF+N +LQ+L + ++F +
Sbjct: 73 VPGLQNLGNNCFLNVILQALASCKDFRSF 101
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 37.5 bits (83), Expect = 0.019
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 229 VVGLKNLGNTCFMNAVLQSLNNIQEFSCY 257
V GL+NLGN CF+N +LQ+L + ++F +
Sbjct: 73 VPGLQNLGNNCFLNVILQALASCKDFRSF 101
Score = 37.5 bits (83), Expect = 0.019
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 33/146 (22%)
Query: 362 KQFWIRRLPNVLCLHLKRFRWHNYFRTKVDTSISFPLRALDVSRF------VRDVRRAEH 415
KQ I R P +LC+ ++R ++ + K+ I+FPL L++S F V R E
Sbjct: 350 KQLIIARFPKLLCIQVQRASFNMFEEFKLSGHIAFPL-VLNLSLFTPSSIGVNIEERIEM 408
Query: 416 DAL-----------LYDLAAVIVHHGSGAGSGHYT------AFAINEEQ--------WFH 450
+ +Y L V+ H G GSGHYT F+ EE+ WF
Sbjct: 409 SSEYQKPEASKNHGMYRLVTVVEHFGR-TGSGHYTVYRSVRVFSQEEEEEDCDEDLSWFS 467
Query: 451 FNDHTVRAADSHAVASCKPYILFYIR 476
+D V V + +LFY R
Sbjct: 468 ISDSEVCRVSESDVLGAEASLLFYER 493
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 35.5 bits (78), Expect = 0.079
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 420 YDLAAVIVHHGSGAGSGHYTAFAINEEQWFHFNDHTV 456
Y L ++ H G+ GHY A + E +W FND V
Sbjct: 741 YKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFNDDKV 777
Score = 34.7 bits (76), Expect = 0.14
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 12 LEQIKVEDTKITKNFSCSECSVPEQNWLCLHCGVVNCGRY------VNGHAKNHADTLGH 65
L+QIK + CS+C E WL L G++ CGR N HA H +
Sbjct: 164 LQQIKSGIVIPPSGWKCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAY 223
Query: 66 QLCI-------SCDAYSVYCYKCDDYIIN 87
L + +A VY Y DD +++
Sbjct: 224 PLAVKLGTITADLEAADVYSYPEDDSVLD 252
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 231 GLKNLGNTCFMNAVLQSLNNIQEF-SCYFNQLPSLEM 266
GL NLGN+C++ A +Q + + F S YF+ SL+M
Sbjct: 309 GLVNLGNSCYLAATMQIVFSTHSFISRYFSH-QSLKM 344
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 35.1 bits (77), Expect = 0.10
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 107 NDEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEI 166
N+E+++ +++QE S ++E + + G DD G+ + ++++ +P STE
Sbjct: 118 NEEEKSEKDEQEKSEEEESEEEEKEEG----NDD-------GEESSNDSTTTEEPSSTE- 165
Query: 167 ENCDSKLDKCIK--GTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQ 224
E S+ +K I+ GTEE I +L P E+ S +N + + KD++ + +
Sbjct: 166 EPSSSEQNKAIEGGGTEEPILALTPVLEA---VEEEKSYKNEEEKSEKDEEEKSEEEESE 222
Query: 225 REKK 228
E+K
Sbjct: 223 EEEK 226
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 3 CEHLLDNVKLEQIKVEDTKITKNFSCSECSVPEQNWLCLHCGVVNC 48
C D VK E+ T++ N C++C PE +W L+ GV+ C
Sbjct: 510 CLQQHDMVKTEKPIDVLTRVLGNERCADCGAPEPDWASLNLGVLIC 555
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 33.5 bits (73), Expect = 0.32
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 156 SSSLDPHSTE-----IENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQIN 210
SSS DP S I N + + ++ GT+ R ++RKR +D + E Q+
Sbjct: 23 SSSDDPDSNSTQHPIIHNPNLESNQIDNGTKTVTREQPVKTRKRRSKKDETKPEKVKQVR 82
Query: 211 RKDKKRSPSNGKLQREKKVVGLKNLGNTCFMNAVLQSLNNIQE 253
++ K ++++ V+G +G FM +L L +E
Sbjct: 83 KRKPKTVCVEDNKKKDETVMGTDGVGT--FMETLLDELTASRE 123
>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
family protein contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 367
Score = 33.5 bits (73), Expect = 0.32
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 382 WHNYFRTKVDTSISFPLRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAF 441
W N T D I+ L AL+ + + R Y L +V+ ++G HY F
Sbjct: 270 WQNTCETVED--IAATLAALNTEIDINIMYRGLDPKSTYSLVSVVCYYGQ-----HYHCF 322
Query: 442 AINEE--QWFHFNDHTVRAADS--HAVASC-----KPYILFYIRR 477
A + E QW ++D TV+ S ++ C +P +L Y RR
Sbjct: 323 AHSREHDQWIMYDDKTVKVIGSWIDVLSMCERGHLQPQVLLYERR 367
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 32.7 bits (71), Expect = 0.55
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 21 KITKNFSCSECSVPEQNWLCLHCGVVNC 48
K+ N C++C PE +W L+ GV+ C
Sbjct: 450 KVCGNDKCADCGAPEPDWASLNLGVLVC 477
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 32.7 bits (71), Expect = 0.55
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 21 KITKNFSCSECSVPEQNWLCLHCGVVNC 48
+I N +C+EC+ P+ +W L+ GV+ C
Sbjct: 475 EIPGNNTCAECNAPDPDWASLNLGVLMC 502
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 32.7 bits (71), Expect = 0.55
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 25 NFSCSECSVPEQNWLCLHCGVVNC 48
N +C+EC+ PE +W L+ GV+ C
Sbjct: 479 NNACAECNAPEPDWASLNLGVLLC 502
>At4g10470.1 68417.m01719 expressed protein
Length = 388
Score = 32.3 bits (70), Expect = 0.73
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 22 ITKNFSCSECSVPEQNWLCL-HCGVVNCGRYVNGHAKNHADTLGHQLCISCDAYSV 76
+T S +P + +L L +C V N Y+N + H+ + SCD YS+
Sbjct: 284 LTHVHSSETSDLPNEQYLDLINCTVQNLNSYINNRVQEHSGDYASAVHSSCDLYSL 339
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 31.9 bits (69), Expect = 0.97
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 107 NDEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEI 166
NDE + + + QD++D D PGL + ++ + + +Q S+ P S E
Sbjct: 1824 NDELERMKNENLLEPQDDNDSDTRFPGL----EQELMQLRQAKEELQ----SIFPLSQEN 1875
Query: 167 ENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDS 200
+C + L++ + E +LR + + TH + S
Sbjct: 1876 FSCGNALERVLALEIELAEALRGKKKSTTHFQSS 1909
>At5g49880.1 68418.m06177 mitotic checkpoint family protein similar
to mitotic checkpoint protein isoform MAD1a [Homo
sapiens] GI:4580767; contains Pfam profile PF05557:
Mitotic checkpoint protein
Length = 726
Score = 31.5 bits (68), Expect = 1.3
Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 13/193 (6%)
Query: 111 QNSREKQEDSRQDEDDCDANIPGLVTAPDDIVL--NVIEGDIAVQPTSSSLDPHSTEIEN 168
Q S EK E+ +IPG V+ PDDIV+ +V++ ++ VQ T + ST I+
Sbjct: 333 QLSMEKLENELSSWKSLLNDIPG-VSCPDDIVMRFSVLQNEV-VQST-MKIGEASTRIKQ 389
Query: 169 CDSKLDKCIKGTEESI-RSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPS-NGKLQRE 226
+ L+ G + ++ + + + D E L + ++K++ + +L++
Sbjct: 390 LEETLEAIQLGRQNAVSEAALAKEKSEALKTDVKRIEVMLTLVTEEKEQLKAVVNELRKS 449
Query: 227 KKVVGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKANGRKVYHSRSYTRQEMND 286
+ + + SL + N + LE N K ++R T E+ +
Sbjct: 450 NSEGSVSGAADGALIQGFESSLAKKE------NYIKDLEQDLNQLKDVNNRQRTEIELLN 503
Query: 287 VVMAEELRKVRCL 299
+ +E R+ + L
Sbjct: 504 EKLVDEARRNKSL 516
>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 545
Score = 30.7 bits (66), Expect = 2.2
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 108 DEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIE 167
D+K++ E+ D + +D+C + ++ + + G I T + H I
Sbjct: 101 DDKKSENERHCDELELDDECGVEEEEEEASVSNVQMRNVSGSIQESSTPGRVFSHFKFIP 160
Query: 168 -NCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSP 218
N S+L + + S + P S +H ED ++ + I D+ SP
Sbjct: 161 GNISSRLSRA--SSSRSFNTTYPVS--SSHREDGVTSPSESAIRLNDRVESP 208
>At4g26940.2 68417.m03877 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 306
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 118 EDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCI 177
E R + +DCD++ GL DI+ +V + A+Q ++ TE+ + + + +
Sbjct: 60 ERLRLESEDCDSSKKGLKRESKDILGDVYKSPDAIQTLDKTISKLETELADARAAQESIM 119
Query: 178 KGTEES 183
G+ S
Sbjct: 120 NGSPVS 125
>At4g26940.1 68417.m03876 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 407
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 118 EDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCI 177
E R + +DCD++ GL DI+ +V + A+Q ++ TE+ + + + +
Sbjct: 60 ERLRLESEDCDSSKKGLKRESKDILGDVYKSPDAIQTLDKTISKLETELADARAAQESIM 119
Query: 178 KGTEES 183
G+ S
Sbjct: 120 NGSPVS 125
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 140 DIVLNVIEGDIA-VQPTSSSLDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRTHSE 198
D++L +E ++A V T SSL+ IE ++DK ++ EE + RK +
Sbjct: 580 DVLLR-LEIEVAKVVETQSSLERQLELIETHQQEVDKALQSMEEEAERIYNDERKSLLDD 638
Query: 199 DSSSTENSL 207
+++ST +++
Sbjct: 639 EAASTRDAM 647
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 29.9 bits (64), Expect = 3.9
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 109 EKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIEN 168
E++ SR+K+E S PG + +D+ + GD + + D H + E+
Sbjct: 816 EEEKSRKKREKS-----------PGKRSGGNDLSSSESSGDERRRKRYNKKDRHRNDSES 864
Query: 169 CDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQREKK 228
DS D + + S R RS++R S + S+ +R+ KK S S E+K
Sbjct: 865 -DSSSDYHSRDKQGS----RSRSKRRESSREKRSSHKKHSKHRRTKKSSSSRYSSDEEQK 919
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 168 NCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQREK 227
+CDSK + +++ R + SR+ S+D+ S+++ + ++ K+R K ++E+
Sbjct: 747 SCDSKDTIRHQIKDKNRRKNKRSSREEVSSDDNGSSDSDVDDRKEAKRRRKEEKKTRKEE 806
Query: 228 K 228
K
Sbjct: 807 K 807
>At2g29040.1 68415.m03530 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 720
Score = 29.9 bits (64), Expect = 3.9
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 138 PDDI-VLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRTH 196
PD+ V+NV+ DI+V +S + S + S+ K + E + R + K+
Sbjct: 65 PDEAPVVNVVSEDISVDNSSLPVSVDSPPDDQM-SEDKKVVTDLVEELEKERVENEKKRV 123
Query: 197 SEDSSSTENSLQINRKDKKRSPSNGKLQREKKVV 230
+ + ++ +++ S+G+L+ EKK V
Sbjct: 124 DSVVIGRSSKARRGHREPRKARSSGRLEAEKKRV 157
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 159 LDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSP 218
++ HS+E E K K + +E+ + +P + ED + EN+ I+ + KK+
Sbjct: 6 MEQHSSENEEIKKKKHKK-RARDEAKKLKQPAMEEEPDHEDGDAKENNALIDEEPKKKKK 64
Query: 219 SNGK 222
K
Sbjct: 65 KKNK 68
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 29.5 bits (63), Expect = 5.2
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 126 DCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCIKGTEESIR 185
+CD I G VT + + + + + + + + T+ ++C K+DK ++ I
Sbjct: 882 ECDTQISGFVTDQEKCLQKLSDMKLERKKLENEVVRMETDHKDCSVKVDKLVE-KHTWIA 940
Query: 186 SLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQR-EKKVVGLKNLGNTCFMNAV 244
S + K D S + + + +K +S +G +R KKV+ + + NA+
Sbjct: 941 SEKQLFGKGGTDYDFESCDPYVAREKLEKLQSDQSGLEKRVNKKVMAMFEKAEDEY-NAL 999
Query: 245 LQSLNNIQ 252
+ N I+
Sbjct: 1000 ISKKNTIE 1007
>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
contains Pfam PF01876: RNase P subunit p30
Length = 581
Score = 29.5 bits (63), Expect = 5.2
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 108 DEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIE 167
D + +S + + R D N+ + T I + + E D V+PT++ L + +
Sbjct: 359 DTQVHSSNQVSELRMATASSDDNLREIETI-SQIDMLMSEDDNKVEPTTNVLKEEAFALR 417
Query: 168 NCDSKLDKCIKGTEESIRSLRPRSRKR-THSEDSSSTENSLQINRKDKKRSPSNGKLQRE 226
C + + G ++ P + R T SE +S +++ + SPS
Sbjct: 418 KCSASHGQ---GILVQNQTATPFTLTRCTKSEAASDVSMNIESTSEGGSMSPSKSDHGIP 474
Query: 227 KKVVGLKNLGNTCF 240
+ V + N+GN F
Sbjct: 475 QSPVEVNNMGNAAF 488
>At4g02800.1 68417.m00380 expressed protein similar to A. thaliana
hypothetical protein T6B20.12 (1946366)
Length = 333
Score = 29.5 bits (63), Expect = 5.2
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)
Query: 116 KQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHS-TEIENCDSKLD 174
+ E S++ ++D + G + + L D A+Q P S +EI + + K D
Sbjct: 72 ESERSKRFKNDSMLLLKGFDSVSHTLSLLSSNLDNALQGVRELAKPPSYSEILHSNLKAD 131
Query: 175 KCIKGT-EESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQREKKVVGLK 233
+ + EE + +KR H D TE+S + +++KR P K+ ++ K + +
Sbjct: 132 QIQRQQKEEDEEEEESKGKKRKHESDVEQTEDS---SNEEEKR-PKERKIMKKAKNIAIS 187
Query: 234 NLGNTCFMNAVLQSLNNIQEFSCYFNQLPSLEMKANGRKVYHSRSYTRQEMNDVV 288
N++ + L I+ + + L + N R R E +D+V
Sbjct: 188 MAAKA---NSLARELKTIKSDLSFIQERCGLLEEENKRLRDGFVKGVRPEEDDLV 239
>At3g29210.1 68416.m03664 hypothetical protein similar to At1g32840,
At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
At3g44500, At2g15190, At3g47260, At5g34900, At2g02210,
At3g32900
Length = 594
Score = 29.5 bits (63), Expect = 5.2
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 108 DEKQNSREKQEDSRQDEDD-CDANIPGLVTAPDDIVLNVIEG-DIAVQPTSSSLDPHSTE 165
+EK N R ++++ R+ ED+ + + + V N E + +++ ++ + +
Sbjct: 369 EEKNNQRSEEDEERKQEDEGLERRLEAEEGGLERKVENDNESFEDSIREPNTQYGSYPGD 428
Query: 166 IENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKR 216
EN ++ D ++ EES + P R T + + S E SL + +KDKKR
Sbjct: 429 DEN--AQRDVGVEVAEESSKDKSPTPRSSTPNFNILS-EESLDV-QKDKKR 475
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 167 ENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQRE 226
E DS+ K K EES R L+ + +K +++ +EN ++DKK N +++E
Sbjct: 1039 EEKDSEERKSKKEKEES-RDLKAK-KKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKE 1096
Query: 227 K 227
+
Sbjct: 1097 E 1097
>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 29.5 bits (63), Expect = 5.2
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 83 DYIINDTENNIDKXXXXXXXXXXXNDEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIV 142
D I+ + N + ++Q ++K++ Q+ +C + PGL +P D +
Sbjct: 430 DQIVQRSTNPKSRMLQFSLRTINSRVQEQKRKKKRKVKPQETSECTSTTPGL--SPYDDI 487
Query: 143 LNVIEGDIAVQPTSSSLDPHSTEIENCDS 171
L + + + P S S I C S
Sbjct: 488 LYLYQNLLLTYPDSDLYSEASQVILKCKS 516
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 79 YKCDDYIINDTENNIDKXXXXXXXXXXXNDEKQNSREKQEDSRQDEDD 126
Y+ D +I+ND + ++ +K+ + K++D DEDD
Sbjct: 46 YENDGFIVNDEDEEEEEEEDEERKDSDEERQKKKKKRKKKDEGLDEDD 93
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 29.5 bits (63), Expect = 5.2
Identities = 19/116 (16%), Positives = 49/116 (42%)
Query: 108 DEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIE 167
+E + +KQE +QDE+ + I + + + E + A++ +++ EI
Sbjct: 432 EEMKMISQKQESKKQDEESSGSKIKITIQEFESLKRGAGETEAAIEKKLATIAAELEEIN 491
Query: 168 NCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKL 223
++ D ++ ++I ++ + S +S+ + + + R N +L
Sbjct: 492 KRRAEADNKLEANLKAIEEMKQATELAQKSAESAEAAKRMVESELQRWRQQENVQL 547
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
to cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 29.1 bits (62), Expect = 6.8
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 123 DEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCIKGTEE 182
DED DA PGL A +++G + S D + ++ C KLD+ G E
Sbjct: 118 DEDSLDATEPGLTKA------EIVDGTDHIVIESERTDNFNFRVDPCFPKLDE-NNGEER 170
Query: 183 --SIRSLRPRSRKRTHSEDSSSTENSLQINRKDKK 215
IR L S + + +S SL+ + D K
Sbjct: 171 KAEIRKLDSSSFLESKVKTTSPVSESLEHSSFDPK 205
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 177 IKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPSNGKLQREKKVVG 231
IKG EE + + R +R+ +D + RK+KK + +RE K VG
Sbjct: 27 IKGVEEKAKKEQRRKDRRSDKKDKKDKKE-----RKEKKEKKEKKRKEREGKEVG 76
>At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family
protein contains Pfam profile: PF00382 transcription
factor TFIIB repeat
Length = 360
Score = 29.1 bits (62), Expect = 6.8
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 278 SYTRQEMNDVVMAEELRKVRCLACGTESKKYDPFLDLSLELPEVGRNDTPVALSD 332
S R + +VV R+ RC CG E KY P DLS V NDT V L D
Sbjct: 8 SCRRCKQINVVTDHVTRRTRCFGCGLEF-KYRPIGDLS----PVAENDT-VRLPD 56
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 199 DSSSTENSL----QINRKDKKRSPSNGKLQREKKVVG 231
DSSST++ + + N+K K+ SNGK Q+++ V G
Sbjct: 2 DSSSTKSKISHSRKTNKKSNKKHESNGKQQQQQDVDG 38
>At1g29170.1 68414.m03569 expressed protein ; expression supported
by MPSS
Length = 1016
Score = 29.1 bits (62), Expect = 6.8
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 83 DYIINDTENNIDKXXXXXXXXXXXNDEKQNSREKQEDSRQDEDDCDANIPGLVTAPDDIV 142
D+ D EN+ + E +N RE + R E + ++ V A + I
Sbjct: 364 DFHSKDNENDKSESGLRKRAGIDEVREIKNGREIVGEPRDSEQETESEGECFVDALNTIE 423
Query: 143 LNVIEGD-IAVQPTSSSLDPHSTEIEN--CDSKLDKCIKGTEESIRSLRPRSRKRTHSED 199
+ SSS +E C+ + ++ E+S RS+ +E+
Sbjct: 424 SESENNQGLQTSQVSSSCGVADERLEKSVCEQETEQNSYSVEDSCRSMDGLMANSFKNEE 483
Query: 200 SSSTEN-SLQINRKDKKRSPSNGKLQR 225
++S+EN S+++++++ + +LQ+
Sbjct: 484 NASSENVSVEMHQQNLQAGSDINRLQK 510
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.7 bits (61), Expect = 9.0
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 160 DPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKRSPS 219
D S++ E+ + K ++ K S + ++ EDSSS E S + ++K++ S
Sbjct: 321 DASSSQDESKEEKPERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEAS 380
Query: 220 NGKLQREKKVVGLK 233
+ + + E K +K
Sbjct: 381 SSQEENEIKETEIK 394
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
family protein / pentatricopeptide (PPR)
repeat-containing protein contains Pfam domains PF01535:
PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1208
Score = 28.7 bits (61), Expect = 9.0
Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 112 NSREKQEDSRQDEDDCDANIPGLVTAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDS 171
N E E+++ ++++C+ P + P++ N+ E V+P S + E E +
Sbjct: 453 NREEVAEENKFEDENCEQESPENLNEPEE--ENISEEGDNVEPMQSQGMEENPEEEEKEG 510
Query: 172 KLDKCIKGTEE-SIRSLRPRSRKRT 195
+ ++ +G + + S++P++ +RT
Sbjct: 511 EEEEESEGNQNPNFFSIQPKTYQRT 535
>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
protein / kinesin motor family protein kinesin,
Syncephalastrum racemosum, AJ225894
Length = 941
Score = 28.7 bits (61), Expect = 9.0
Identities = 16/78 (20%), Positives = 39/78 (50%)
Query: 153 QPTSSSLDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRK 212
Q S++ + TE++N SK K I E+ + + TH+ +S E ++ +
Sbjct: 588 QARSTNAEHQLTEMKNILSKQQKSIHEQEKGNYQYQRELAETTHTYESKIAELQKKLEGE 647
Query: 213 DKKRSPSNGKLQREKKVV 230
+ + + + +L++ K+++
Sbjct: 648 NARSNAAEDQLRQMKRLI 665
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 28.7 bits (61), Expect = 9.0
Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 172 KLDKCIKGTEESIRSLRPRSRKRTHSEDSSSTENSLQINRKDKKR--SPSNGKLQREKKV 229
K K +K + + + +K +HSE S E Q +K+KK+ + + + + E+ V
Sbjct: 47 KKKKLVKDKDADVSETPAKKQKVSHSEGVHSREKDAQKKKKNKKKEVAVKSDEDEDEQDV 106
Query: 230 VGLKNLGNTCFMNAVLQSLNNIQEFSCYFNQLP--SLEMKANGRKVYHSRSYTRQEMNDV 287
G ++L + ++ ++ LN+ F N + S ++ G +V SR Y + E
Sbjct: 107 RGEQSLVDA--VSNLISPLNS--RFDTVDNNIKEMSSRLEVIGDQV-ESRIYAKFERRFA 161
Query: 288 VMAEELRKVR 297
+ E+++++
Sbjct: 162 SIENEVKQMK 171
>At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein
contains Pfam domains, PF02733: DAK1 domain and PF02734:
DAK2 domain
Length = 595
Score = 28.7 bits (61), Expect = 9.0
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 398 LRALDVSRFVRDVRRAEHDALLYDLAAVIVHHGSGAGSGHYTAFA 442
L+ LD V+ V RA+ A YD AVI SG GSGH A A
Sbjct: 30 LQYLDGFPEVKVVLRADVSAAKYDKVAVI----SGGGSGHEPAHA 70
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1299
Score = 28.7 bits (61), Expect = 9.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 136 TAPDDIVLNVIEGDIAVQPTSSSLDPHSTEIENCDSKLDKCIKGTEESIRSLRPRSRKRT 195
T D+ L +I +IAV PT SS S E E D ++ T E + +
Sbjct: 969 TVARDLPLLLISTEIAVAPTGSSDSDDSNEEEEDD---EEVAANTNEEVAANTNEEGMDI 1025
Query: 196 HSEDS-------SSTENSLQI 209
H E+S SS ENS+++
Sbjct: 1026 HKEESRRGAKMMSSPENSVKL 1046
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,177
Number of Sequences: 28952
Number of extensions: 503822
Number of successful extensions: 2062
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1883
Number of HSP's gapped (non-prelim): 158
length of query: 481
length of database: 12,070,560
effective HSP length: 84
effective length of query: 397
effective length of database: 9,638,592
effective search space: 3826521024
effective search space used: 3826521024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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