BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein S17e (139 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 144 3e-36 SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 144 3e-36 SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.4 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.4 SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 2.5 SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 5.7 SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 5.7 SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 5.7 SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.7 SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 24 7.5 SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 24 7.5 SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 9.9 SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 9.9 SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 24 9.9 SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 24 9.9 SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 24 9.9 SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 24 9.9 SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 9.9 >SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosaccharomyces pombe|chr 2|||Manual Length = 131 Score = 144 bits (350), Expect = 3e-36 Identities = 72/116 (62%), Positives = 88/116 (75%), Gaps = 1/116 (0%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRR 138 ERER+D YVPEVS LE D + VD DTKDMLK L ++ I +++ PA Q + R+ Sbjct: 77 ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQERFRRRQ 131 >SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|Schizosaccharomyces pombe|chr 3|||Manual Length = 132 Score = 144 bits (350), Expect = 3e-36 Identities = 69/98 (70%), Positives = 80/98 (81%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 120 ERER+D YVPEVS LE D I VD DTKDMLK L +++I Sbjct: 77 ERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114 >SPCC1827.04 |||ankyrin repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 3|||Manual Length = 600 Score = 26.6 bits (56), Expect = 1.4 Identities = 13/25 (52%), Positives = 16/25 (64%) Query: 70 SQVRGISIKLQEEERERRDNYVPEV 94 S V ISIK QEEER+R+ E+ Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 26.6 bits (56), Expect = 1.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 65 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 95 R+ S+ R S KL EEER+RR +V +++ Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248 >SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 488 Score = 25.8 bits (54), Expect = 2.5 Identities = 10/34 (29%), Positives = 21/34 (61%) Query: 97 LEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 130 ++ D + ++ D KD+L ++F ++ G+ L P T Sbjct: 207 IKDDKLVINGDNKDILLQINFVDVLGIMLEAPFT 240 >SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces pombe|chr 3|||Manual Length = 245 Score = 24.6 bits (51), Expect = 5.7 Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 43 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 73 EIA++ TKP + I G RL S++R Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239 >SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces pombe|chr 1|||Manual Length = 386 Score = 24.6 bits (51), Expect = 5.7 Identities = 10/39 (25%), Positives = 21/39 (53%) Query: 85 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 123 +R D E + ++ + +DPD KD+ +++ N N + Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341 >SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 218 Score = 24.6 bits (51), Expect = 5.7 Identities = 7/28 (25%), Positives = 17/28 (60%) Query: 78 KLQEEERERRDNYVPEVSALEHDIIEVD 105 + + +E+ RRD + L+H+I+ ++ Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129 >SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein 3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1385 Score = 24.6 bits (51), Expect = 5.7 Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 67 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 99 L++ + K Q+ ++R D + EVSA++H Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885 >SPBC342.04 |||adhesion regulating molecule protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 291 Score = 24.2 bits (50), Expect = 7.5 Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 42 EEIAIIPTKPLRNKIAGFATHLMRRLRH-SQVRGISIKLQEEERERRDNYVPEVSALEHD 100 ++I + ++ K+ T L++ S + +QE + +Y +++ D Sbjct: 54 DDIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKD 113 Query: 101 IIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 131 +DP D+ + D ++ ++ ++P Q Sbjct: 114 QDLLDPARSDVATVSDMMEVDTVEQSEPIAQ 144 >SPBC2G2.08 |ade9||C-1- tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr ogenase/methylenetetrahydrofolatecyclohydrolase/formylte trahydrofolatesynthetase|Schizosaccharomyces pombe|chr 2|||Manual Length = 969 Score = 24.2 bits (50), Expect = 7.5 Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Query: 102 IEVDPDTKDMLKMLDFNN--INGLQLTQPATQGGY 134 + VDPDT + ++LD N+ + +++ + +T+ G+ Sbjct: 546 LNVDPDTIECNRVLDVNDRFLRSIEVGKASTEKGH 580 >SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces pombe|chr 1|||Manual Length = 1679 Score = 23.8 bits (49), Expect = 9.9 Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 48 PTKPLRNKIAGFATHLMRRLRHS 70 P + +RNK A H+M RL ++ Sbjct: 43 PHESVRNKTISIANHIMTRLNNN 65 >SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 754 Score = 23.8 bits (49), Expect = 9.9 Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 72 VRGISIKLQEEERERRDNYV 91 + G+S+KLQE+E +R + V Sbjct: 365 IGGLSLKLQEQELRKRPDIV 384 >SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 450 Score = 23.8 bits (49), Expect = 9.9 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 52 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEV 104 +R +IA F A H ++R S+ ++ + E +R Y+P +S + +EV Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428 >SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pombe|chr 2|||Manual Length = 662 Score = 23.8 bits (49), Expect = 9.9 Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 75 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 119 +++ QEEE +R +V +E D E D L L N+ Sbjct: 589 VTMLSQEEEAKRMVQLSMDVDKIEEDFKENDEQATSSLNALSSNH 633 >SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 23.8 bits (49), Expect = 9.9 Identities = 9/19 (47%), Positives = 15/19 (78%) Query: 77 IKLQEEERERRDNYVPEVS 95 +KLQ EE ER+ N++ ++S Sbjct: 650 LKLQREEYERQQNHIYKLS 668 >SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosaccharomyces pombe|chr 2|||Manual Length = 421 Score = 23.8 bits (49), Expect = 9.9 Identities = 12/44 (27%), Positives = 20/44 (45%) Query: 78 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNIN 121 KL E+E+ ++Y +V LEH I + + + L N Sbjct: 82 KLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSN 125 >SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual Length = 1217 Score = 23.8 bits (49), Expect = 9.9 Identities = 10/34 (29%), Positives = 19/34 (55%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKI 56 +++ + LTL + + + E+IA P K NK+ Sbjct: 438 LQQIFIELTLKTEQEEYVREQIAWTPIKYFNNKV 471 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 598,711 Number of Sequences: 5004 Number of extensions: 22742 Number of successful extensions: 68 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 18 length of query: 139 length of database: 2,362,478 effective HSP length: 66 effective length of query: 73 effective length of database: 2,032,214 effective search space: 148351622 effective search space used: 148351622 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 49 (23.8 bits)
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