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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
         (139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   144   3e-36
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   144   3e-36
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.4  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.4  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   2.5  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   5.7  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   5.7  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   5.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   5.7  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    24   7.5  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   7.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   9.9  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    24   9.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    24   9.9  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    24   9.9  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    24   9.9  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    24   9.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   9.9  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  144 bits (350), Expect = 3e-36
 Identities = 72/116 (62%), Positives = 88/116 (75%), Gaps = 1/116 (0%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRR 138
           ERER+D YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q  +  R+
Sbjct: 77  ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQERFRRRQ 131


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  144 bits (350), Expect = 3e-36
 Identities = 69/98 (70%), Positives = 80/98 (81%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 120
           ERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 77  ERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 70  SQVRGISIKLQEEERERRDNYVPEV 94
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 65  RRLRHSQVRGISIKLQEEERERRDNYVPEVS 95
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 97  LEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 130
           ++ D + ++ D KD+L  ++F ++ G+ L  P T
Sbjct: 207 IKDDKLVINGDNKDILLQINFVDVLGIMLEAPFT 240


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 43  EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 73
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 85  ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 123
           +R D    E + ++ +   +DPD KD+  +++ N  N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 78  KLQEEERERRDNYVPEVSALEHDIIEVD 105
           + + +E+ RRD     +  L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 67  LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 99
           L++  +     K Q+  ++R D +  EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 42  EEIAIIPTKPLRNKIAGFATHLMRRLRH-SQVRGISIKLQEEERERRDNYVPEVSALEHD 100
           ++I +  ++    K+    T     L++ S    +   +QE   +   +Y   +++   D
Sbjct: 54  DDIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKD 113

Query: 101 IIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 131
              +DP   D+  + D   ++ ++ ++P  Q
Sbjct: 114 QDLLDPARSDVATVSDMMEVDTVEQSEPIAQ 144


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 102 IEVDPDTKDMLKMLDFNN--INGLQLTQPATQGGY 134
           + VDPDT +  ++LD N+  +  +++ + +T+ G+
Sbjct: 546 LNVDPDTIECNRVLDVNDRFLRSIEVGKASTEKGH 580


>SPAC1782.01 ||SPAPYUG7.07|proteasome
          component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1679

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 48 PTKPLRNKIAGFATHLMRRLRHS 70
          P + +RNK    A H+M RL ++
Sbjct: 43 PHESVRNKTISIANHIMTRLNNN 65


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 72  VRGISIKLQEEERERRDNYV 91
           + G+S+KLQE+E  +R + V
Sbjct: 365 IGGLSLKLQEQELRKRPDIV 384


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 52  LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEV 104
           +R +IA F    A H ++R   S+    ++ + E   +R   Y+P +S    + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 75  ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 119
           +++  QEEE +R      +V  +E D  E D      L  L  N+
Sbjct: 589 VTMLSQEEEAKRMVQLSMDVDKIEEDFKENDEQATSSLNALSSNH 633


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 77  IKLQEEERERRDNYVPEVS 95
           +KLQ EE ER+ N++ ++S
Sbjct: 650 LKLQREEYERQQNHIYKLS 668


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 78  KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNIN 121
           KL E+E+   ++Y  +V  LEH I +   +   +   L     N
Sbjct: 82  KLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSN 125


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKI 56
           +++ +  LTL  +  + + E+IA  P K   NK+
Sbjct: 438 LQQIFIELTLKTEQEEYVREQIAWTPIKYFNNKV 471


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,711
Number of Sequences: 5004
Number of extensions: 22742
Number of successful extensions: 68
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 18
length of query: 139
length of database: 2,362,478
effective HSP length: 66
effective length of query: 73
effective length of database: 2,032,214
effective search space: 148351622
effective search space used: 148351622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)

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