Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
(139 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 144 3e-36
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 144 3e-36
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.4
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.4
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 2.5
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 5.7
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 5.7
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 5.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.7
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 24 7.5
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 24 7.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 9.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 9.9
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 24 9.9
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 24 9.9
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 24 9.9
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 24 9.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 9.9
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 144 bits (350), Expect = 3e-36
Identities = 72/116 (62%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRR 138
ERER+D YVPEVS LE D + VD DTKDMLK L ++ I +++ PA Q + R+
Sbjct: 77 ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQERFRRRQ 131
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 144 bits (350), Expect = 3e-36
Identities = 69/98 (70%), Positives = 80/98 (81%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 120
ERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 77 ERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 70 SQVRGISIKLQEEERERRDNYVPEV 94
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 65 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 95
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 97 LEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 130
++ D + ++ D KD+L ++F ++ G+ L P T
Sbjct: 207 IKDDKLVINGDNKDILLQINFVDVLGIMLEAPFT 240
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 43 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 73
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 85 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 123
+R D E + ++ + +DPD KD+ +++ N N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 5.7
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 78 KLQEEERERRDNYVPEVSALEHDIIEVD 105
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 67 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 99
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 24.2 bits (50), Expect = 7.5
Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 42 EEIAIIPTKPLRNKIAGFATHLMRRLRH-SQVRGISIKLQEEERERRDNYVPEVSALEHD 100
++I + ++ K+ T L++ S + +QE + +Y +++ D
Sbjct: 54 DDIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKD 113
Query: 101 IIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 131
+DP D+ + D ++ ++ ++P Q
Sbjct: 114 QDLLDPARSDVATVSDMMEVDTVEQSEPIAQ 144
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 7.5
Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 102 IEVDPDTKDMLKMLDFNN--INGLQLTQPATQGGY 134
+ VDPDT + ++LD N+ + +++ + +T+ G+
Sbjct: 546 LNVDPDTIECNRVLDVNDRFLRSIEVGKASTEKGH 580
>SPAC1782.01 ||SPAPYUG7.07|proteasome
component|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1679
Score = 23.8 bits (49), Expect = 9.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 48 PTKPLRNKIAGFATHLMRRLRHS 70
P + +RNK A H+M RL ++
Sbjct: 43 PHESVRNKTISIANHIMTRLNNN 65
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 9.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 72 VRGISIKLQEEERERRDNYV 91
+ G+S+KLQE+E +R + V
Sbjct: 365 IGGLSLKLQEQELRKRPDIV 384
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.8 bits (49), Expect = 9.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 52 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEV 104
+R +IA F A H ++R S+ ++ + E +R Y+P +S + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 23.8 bits (49), Expect = 9.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 75 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 119
+++ QEEE +R +V +E D E D L L N+
Sbjct: 589 VTMLSQEEEAKRMVQLSMDVDKIEEDFKENDEQATSSLNALSSNH 633
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 23.8 bits (49), Expect = 9.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 77 IKLQEEERERRDNYVPEVS 95
+KLQ EE ER+ N++ ++S
Sbjct: 650 LKLQREEYERQQNHIYKLS 668
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 23.8 bits (49), Expect = 9.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 78 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNIN 121
KL E+E+ ++Y +V LEH I + + + L N
Sbjct: 82 KLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSN 125
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect = 9.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKI 56
+++ + LTL + + + E+IA P K NK+
Sbjct: 438 LQQIFIELTLKTEQEEYVREQIAWTPIKYFNNKV 471
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,711
Number of Sequences: 5004
Number of extensions: 22742
Number of successful extensions: 68
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 18
length of query: 139
length of database: 2,362,478
effective HSP length: 66
effective length of query: 73
effective length of database: 2,032,214
effective search space: 148351622
effective search space used: 148351622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)
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