Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
(139 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 134 2e-32
03_01_0066 - 537729-538163 134 2e-32
03_02_0943 + 12598616-12598789,12599790-12601250 31 0.26
06_01_0889 - 6807449-6809257 30 0.78
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 3.2
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746... 27 4.2
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 7.3
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273... 27 7.3
12_02_0720 - 22510996-22512949,22513752-22514533 26 9.6
08_01_1057 + 10761508-10761758,10762155-10762267,10762681-107627... 26 9.6
07_01_0358 - 2631214-2632992 26 9.6
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 26 9.6
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 26 9.6
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 26 9.6
>10_07_0174 + 13815478-13815903
Length = 141
Score = 134 bits (325), Expect = 2e-32
Identities = 63/112 (56%), Positives = 85/112 (75%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGY 134
ERERR ++VPE SALE + I VD +T +ML L ++ G++ Q + Y
Sbjct: 77 ERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128
>03_01_0066 - 537729-538163
Length = 144
Score = 134 bits (324), Expect = 2e-32
Identities = 64/106 (60%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 128
ERERR ++VP+ SALE D I VD +T DML L ++ G+ + QP
Sbjct: 77 ERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 57 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 116
A +++HL+RR+ + K Q EE ++ + + + LEHD+I + +T D+LK L+
Sbjct: 41 AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96
>06_01_0889 - 6807449-6809257
Length = 602
Score = 29.9 bits (64), Expect = 0.78
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 67 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 107
LRH Q R I ++ + R R + YVP+ HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 75 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 115
++I++Q + +R + +V A E I DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655
>03_02_0324 -
7463482-7463601,7463660-7463736,7463827-7463883,
7464154-7464246,7464528-7464654,7464836-7466794
Length = 810
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 69 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 107
H Q + I KL E R R+ Y PEV A HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 107 DTKDMLKMLDFNNINGLQLTQPATQ 131
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>04_04_0008 +
22125707-22125828,22127122-22127197,22127297-22127367,
22127502-22127995,22128079-22128239,22128329-22128532,
22129292-22129526,22129996-22130591
Length = 652
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 78 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 115
+LQE D + E+ H+I+E + D + ML++L
Sbjct: 543 RLQENRGGVDDYLMEEIRVRSHEILENEEDMQQMLRIL 580
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 26.2 bits (55), Expect = 9.6
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 61 THLMRRLR-HSQVRGISIKLQEEER---ERRDNYVPEVSALEHDIIEVDPDTKDML-KML 115
T+L + + + Q+ G+ + ++ + ERR Y+ + A I++VDP + M K
Sbjct: 93 TNLFNKFKTNHQIHGVIKDIMDQVKKVSERRSRYIVDDIAARPTIVDVDPRLEAMYRKAT 152
Query: 116 DFNNIN--GLQLTQPATQGGYGGRR 138
+ IN +LT+ + Y R+
Sbjct: 153 ELVGINEPKSELTKRLLEHDYSSRQ 177
>08_01_1057 +
10761508-10761758,10762155-10762267,10762681-10762733,
10763892-10764248
Length = 257
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/64 (18%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 60 ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 119
A +L+ + S+++ ++ + EE++++D + + LE D ++ + D+K ++ +
Sbjct: 122 AVYLVAQYARSEIK--RMEAEAEEKKKKDEELEKEKQLEADSVKDETDSKLSAVLVRLDT 179
Query: 120 INGL 123
+ G+
Sbjct: 180 LEGV 183
>07_01_0358 - 2631214-2632992
Length = 592
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 52 LRNKIAGFATHLMRRLRHSQVRGISIKLQE-EERERRDNYVPEVSALEHDIIEVDPDT 108
LRN + F +M H + I L E ER RR+ Y+P S + DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 56 IAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPD 107
+ G A HL+ L + +S E E +R +++PE + ++ +I E D D
Sbjct: 7 LGGKAAHLVSDLATVILNPVS----ERESQRHPSHLPEATEVQENIYEDDDD 54
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 26.2 bits (55), Expect = 9.6
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 53 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD-M 111
R + G L+RRL S I + +EEE E +DN EV+ + E+ +++
Sbjct: 109 RLPVKGLKDELVRRLFES----IQSE-KEEEEEEQDNETVEVNPAANQASEIQSVSQETT 163
Query: 112 LKMLDFNNINGLQLTQPAT 130
+ + + + +Q+TQ AT
Sbjct: 164 VSITEVHKETVVQVTQEAT 182
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 26.2 bits (55), Expect = 9.6
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 47 IPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPE---VSALEHD--- 100
+ T +RN +A L R++ R + L NY+ + +SAL D
Sbjct: 169 LKTLKVRNNLAIKIQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNIDESR 228
Query: 101 IIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYG 135
++ + T+++ K+LD ++ L++ GG G
Sbjct: 229 LVGMADKTEEVTKLLDEGHVPNLKVVSVVGFGGLG 263
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,699,364
Number of Sequences: 37544
Number of extensions: 135930
Number of successful extensions: 391
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 15
length of query: 139
length of database: 14,793,348
effective HSP length: 75
effective length of query: 64
effective length of database: 11,977,548
effective search space: 766563072
effective search space used: 766563072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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