SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
         (139 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   29   1.1  
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)                    28   2.5  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   4.3  
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)            27   4.3  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         27   7.5  
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 56  IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 112
           I   + ++MR+ R +  R ++ +LQE   E++R+D    E++ L    I +D   KD L
Sbjct: 44  IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102


>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 736

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 74  GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 128
           G+    +E +RE    Y   VSA +H +     D +  + +LD N+      +GL +T  
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515

Query: 129 ATQGGYGG 136
            ++G  GG
Sbjct: 516 ISEGAGGG 523


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 42  EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 101
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+   +  EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514

Query: 102 I 102
           +
Sbjct: 515 M 515


>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
          Length = 163

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 50  KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 106
           K LR ++  FA+H  RRLR + +R     K+ +     ++ Y P VS A+   II ++D 
Sbjct: 56  KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114

Query: 107 DTKDMLKMLD----FNNINGLQLTQPATQ 131
             +  + + D      ++N   + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 26 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 55
          YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14 YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 27   YTRLTLDFDTNKRICEEIAIIPTK-PLRNKIAG--FATHLMRRLRHSQVRGISIKLQEEE 83
            ++R   +F   ++I +       K  ++ ++ G  FA H     +   + G+  +L+E+ 
Sbjct: 1160 FSRCLFEFVLKEQIAKTSTFTSEKHEVKARLPGSLFAGHCENNAKTLSIHGVGRELEEQN 1219

Query: 84   RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 128
              +  + VP  +AL + I+E  P T    K  +++ I  L +++P
Sbjct: 1220 AGKIRSRVPGATALVNGILE--PFTDVAYKNSNWSEIE-LHISRP 1261


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 63  LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 110
           L +R RHS+    S     + RE+  +++ ++  LE++    D DT++
Sbjct: 54  LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 92  PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 123
           PE+S + H I    PD +D   +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140


>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 38  KRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87
           + + E+I I+P  P R ++A  A    RRLR  + +    +L +E+R RR
Sbjct: 346 EELFEQIEIMP--PERVEMAEKAKEKERRLRQREEKMEQQRLHQEDRVRR 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,357,953
Number of Sequences: 59808
Number of extensions: 161519
Number of successful extensions: 432
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 10
length of query: 139
length of database: 16,821,457
effective HSP length: 75
effective length of query: 64
effective length of database: 12,335,857
effective search space: 789494848
effective search space used: 789494848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)

- SilkBase 1999-2023 -