BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein S17e (139 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) 29 1.1 SB_55456| Best HMM Match : Cadherin (HMM E-Value=0) 28 2.5 SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 4.3 SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3) 27 4.3 SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7 SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7 SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7 SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 27 7.5 SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9 >SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) Length = 249 Score = 29.5 bits (63), Expect = 1.1 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 56 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 112 I + ++MR+ R + R ++ +LQE E++R+D E++ L I +D KD L Sbjct: 44 IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102 >SB_55456| Best HMM Match : Cadherin (HMM E-Value=0) Length = 736 Score = 28.3 bits (60), Expect = 2.5 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 74 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 128 G+ +E +RE Y VSA +H + D + + +LD N+ +GL +T Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515 Query: 129 ATQGGYGG 136 ++G GG Sbjct: 516 ISEGAGGG 523 >SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) Length = 1217 Score = 27.5 bits (58), Expect = 4.3 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 42 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 101 + + +P++ LRN++ + L R + Q I K +EE+ + NY+ + EH + Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514 Query: 102 I 102 + Sbjct: 515 M 515 >SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3) Length = 163 Score = 27.5 bits (58), Expect = 4.3 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 50 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 106 K LR ++ FA+H RRLR + +R K+ + ++ Y P VS A+ II ++D Sbjct: 56 KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114 Query: 107 DTKDMLKMLD----FNNINGLQLTQPATQ 131 + + + D ++N + +P+T+ Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143 >SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1040 Score = 27.1 bits (57), Expect = 5.7 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Query: 26 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 55 YY++LT D+D+ K EI I+P+ P+ K Sbjct: 14 YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42 >SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1743 Score = 27.1 bits (57), Expect = 5.7 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 6/105 (5%) Query: 27 YTRLTLDFDTNKRICEEIAIIPTK-PLRNKIAG--FATHLMRRLRHSQVRGISIKLQEEE 83 ++R +F ++I + K ++ ++ G FA H + + G+ +L+E+ Sbjct: 1160 FSRCLFEFVLKEQIAKTSTFTSEKHEVKARLPGSLFAGHCENNAKTLSIHGVGRELEEQN 1219 Query: 84 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 128 + + VP +AL + I+E P T K +++ I L +++P Sbjct: 1220 AGKIRSRVPGATALVNGILE--PFTDVAYKNSNWSEIE-LHISRP 1261 >SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1087 Score = 27.1 bits (57), Expect = 5.7 Identities = 13/48 (27%), Positives = 26/48 (54%) Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 110 L +R RHS+ S + RE+ +++ ++ LE++ D DT++ Sbjct: 54 LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101 >SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) Length = 1084 Score = 26.6 bits (56), Expect = 7.5 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Query: 92 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 123 PE+S + H I PD +D +L+F+NI G+ Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140 >SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 442 Score = 26.2 bits (55), Expect = 9.9 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 38 KRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87 + + E+I I+P P R ++A A RRLR + + +L +E+R RR Sbjct: 346 EELFEQIEIMP--PERVEMAEKAKEKERRLRQREEKMEQQRLHQEDRVRR 393 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,357,953 Number of Sequences: 59808 Number of extensions: 161519 Number of successful extensions: 432 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 428 Number of HSP's gapped (non-prelim): 10 length of query: 139 length of database: 16,821,457 effective HSP length: 75 effective length of query: 64 effective length of database: 12,335,857 effective search space: 789494848 effective search space used: 789494848 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 55 (26.2 bits)
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