Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
(139 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) 29 1.1
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0) 28 2.5
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 4.3
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3) 27 4.3
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 27 7.5
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
Length = 249
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 56 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 112
I + ++MR+ R + R ++ +LQE E++R+D E++ L I +D KD L
Sbjct: 44 IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102
>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 736
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 74 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 128
G+ +E +RE Y VSA +H + D + + +LD N+ +GL +T
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515
Query: 129 ATQGGYGG 136
++G GG
Sbjct: 516 ISEGAGGG 523
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 42 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 101
+ + +P++ LRN++ + L R + Q I K +EE+ + NY+ + EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514
Query: 102 I 102
+
Sbjct: 515 M 515
>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
Length = 163
Score = 27.5 bits (58), Expect = 4.3
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 50 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 106
K LR ++ FA+H RRLR + +R K+ + ++ Y P VS A+ II ++D
Sbjct: 56 KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114
Query: 107 DTKDMLKMLD----FNNINGLQLTQPATQ 131
+ + + D ++N + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143
>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 26 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 55
YY++LT D+D+ K EI I+P+ P+ K
Sbjct: 14 YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 27.1 bits (57), Expect = 5.7
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 27 YTRLTLDFDTNKRICEEIAIIPTK-PLRNKIAG--FATHLMRRLRHSQVRGISIKLQEEE 83
++R +F ++I + K ++ ++ G FA H + + G+ +L+E+
Sbjct: 1160 FSRCLFEFVLKEQIAKTSTFTSEKHEVKARLPGSLFAGHCENNAKTLSIHGVGRELEEQN 1219
Query: 84 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 128
+ + VP +AL + I+E P T K +++ I L +++P
Sbjct: 1220 AGKIRSRVPGATALVNGILE--PFTDVAYKNSNWSEIE-LHISRP 1261
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 110
L +R RHS+ S + RE+ +++ ++ LE++ D DT++
Sbjct: 54 LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 92 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 123
PE+S + H I PD +D +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140
>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 38 KRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87
+ + E+I I+P P R ++A A RRLR + + +L +E+R RR
Sbjct: 346 EELFEQIEIMP--PERVEMAEKAKEKERRLRQREEKMEQQRLHQEDRVRR 393
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,357,953
Number of Sequences: 59808
Number of extensions: 161519
Number of successful extensions: 432
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 10
length of query: 139
length of database: 16,821,457
effective HSP length: 75
effective length of query: 64
effective length of database: 12,335,857
effective search space: 789494848
effective search space used: 789494848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -