BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein S17e (139 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value M22142-1|AAA28869.1| 131|Drosophila melanogaster protein ( D.me... 202 1e-52 BT001651-1|AAN71406.1| 131|Drosophila melanogaster RE44119p pro... 202 1e-52 AJ271817-3|CAB72251.1| 131|Drosophila melanogaster ribosomal pr... 202 1e-52 AE014296-1654|AAF50272.1| 131|Drosophila melanogaster CG3922-PB... 202 1e-52 AL138972-11|CAB72294.1| 1212|Drosophila melanogaster EG:BACR25B3... 29 2.3 AF132186-1|AAD34774.1| 1212|Drosophila melanogaster unknown prot... 29 2.3 AE014298-417|AAF45793.1| 1212|Drosophila melanogaster CG8590-PA ... 29 2.3 AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA... 27 9.1 >M22142-1|AAA28869.1| 131|Drosophila melanogaster protein ( D.melanogaster ribosomalprotein S17 gene, complete cds. ). Length = 131 Score = 202 bits (493), Expect = 1e-52 Identities = 99/117 (84%), Positives = 104/117 (88%), Gaps = 2/117 (1%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE Sbjct: 17 IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRRN 139 ERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T GRRN Sbjct: 77 ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNTNN--FGRRN 131 >BT001651-1|AAN71406.1| 131|Drosophila melanogaster RE44119p protein. Length = 131 Score = 202 bits (493), Expect = 1e-52 Identities = 99/117 (84%), Positives = 104/117 (88%), Gaps = 2/117 (1%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE Sbjct: 17 IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRRN 139 ERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T GRRN Sbjct: 77 ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNTNN--FGRRN 131 >AJ271817-3|CAB72251.1| 131|Drosophila melanogaster ribosomal protein S17 protein. Length = 131 Score = 202 bits (493), Expect = 1e-52 Identities = 99/117 (84%), Positives = 104/117 (88%), Gaps = 2/117 (1%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE Sbjct: 17 IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRRN 139 ERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T GRRN Sbjct: 77 ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNTNN--FGRRN 131 >AE014296-1654|AAF50272.1| 131|Drosophila melanogaster CG3922-PB protein. Length = 131 Score = 202 bits (493), Expect = 1e-52 Identities = 99/117 (84%), Positives = 104/117 (88%), Gaps = 2/117 (1%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQEE Sbjct: 17 IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRRN 139 ERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T GRRN Sbjct: 77 ERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNTNN--FGRRN 131 >AL138972-11|CAB72294.1| 1212|Drosophila melanogaster EG:BACR25B3.9 protein. Length = 1212 Score = 29.1 bits (62), Expect = 2.3 Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDII 102 LM +LR+ + + IS KL EE R+R E+S L +I Sbjct: 597 LMDQLRNIKSKDISAKLAEERRKRLQLLEQEISDLRRKLI 636 >AF132186-1|AAD34774.1| 1212|Drosophila melanogaster unknown protein. Length = 1212 Score = 29.1 bits (62), Expect = 2.3 Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDII 102 LM +LR+ + + IS KL EE R+R E+S L +I Sbjct: 597 LMDQLRNIKSKDISAKLAEERRKRLQLLEQEISDLRRKLI 636 >AE014298-417|AAF45793.1| 1212|Drosophila melanogaster CG8590-PA protein. Length = 1212 Score = 29.1 bits (62), Expect = 2.3 Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDII 102 LM +LR+ + + IS KL EE R+R E+S L +I Sbjct: 597 LMDQLRNIKSKDISAKLAEERRKRLQLLEQEISDLRRKLI 636 >AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA protein. Length = 2013 Score = 27.1 bits (57), Expect = 9.1 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%) Query: 42 EEIAIIPTK--PLRNKIAGFATHLMRRLRHSQVRGISI-KLQEEERERRDNYVPEVSALE 98 +E+A + T L+++++ L LR Q++ +I +LQ + E + + ++E Sbjct: 1122 QEVATLKTSITELQSQVSDLKAELENHLRQIQLKDGNIARLQTDFEEMSERCL----SME 1177 Query: 99 HDIIEVDPDTKDMLKMLD 116 + E+D DTK ++LD Sbjct: 1178 VRLAELDEDTKQKQELLD 1195 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,533,642 Number of Sequences: 52641 Number of extensions: 254867 Number of successful extensions: 882 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 875 Number of HSP's gapped (non-prelim): 8 length of query: 139 length of database: 24,830,863 effective HSP length: 78 effective length of query: 61 effective length of database: 20,724,865 effective search space: 1264216765 effective search space used: 1264216765 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 57 (27.1 bits)
- SilkBase 1999-2023 -