Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
(139 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 139 8e-34
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 2.1
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 2.1
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 28 2.1
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 2.1
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 2.1
Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical pr... 27 3.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 3.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 3.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 3.7
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 27 6.5
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 27 6.5
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 27 6.5
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 26 8.6
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 139 bits (336), Expect = 8e-34
Identities = 66/99 (66%), Positives = 78/99 (78%), Gaps = 3/99 (3%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQEE
Sbjct: 17 IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76
Query: 83 ERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 118
ERERRDNY+PE+S ++ I+VD DT DMLK FN
Sbjct: 77 ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 64 MRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNING 122
+R L +V ++ ++ EE+ R +++ DI + D ++ML+ + N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 32 LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89
LD+ N+R ++AII + K+ A H +LR S +R + + L+E E R +
Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453
Query: 90 YVPEVSALEHDIIEVDPDTKDMLKML 115
V + + I +D KML
Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479
>Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 32 LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89
LD+ N+R ++AII + K+ A H +LR S +R + + L+E E R +
Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453
Query: 90 YVPEVSALEHDIIEVDPDTKDMLKML 115
V + + I +D KML
Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 49 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 73 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 125
RG ++ E+ + R D+ Y + +A++ ++ DPD + ++L ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 32 LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89
LD+ N+R ++AII + K+ A H +LR S +R + + L+E E R +
Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453
Query: 90 YVPEVSALEHDIIEVDPDTKDMLKML 115
V + + I +D KML
Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp
(synaptic vesicle protein)homolog protein 1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 49 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical
protein F59A2.2 protein.
Length = 520
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 33 DFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRD 88
D D N+R +++ + + + + ++ +L ++ +G+ L+EEER+R +
Sbjct: 337 DADANQRWSDKVEKV--QAMNKALESEKNEMIEKLSEAKAQGVKAVLEEEERKRTE 390
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 62 HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
HL ++ +H + I++K E++ + + PE+S +E
Sbjct: 8580 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8616
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 62 HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
HL ++ +H + I++K E++ + + PE+S +E
Sbjct: 8600 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8636
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 62 HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
HL ++ +H + I++K E++ + + PE+S +E
Sbjct: 8600 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8636
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 108 TKDMLKMLDFNNINGLQL 125
T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
++ R +SQ+ +SI L+ E +ER+D+Y + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD--FNNI 120
LMR L Q+ I L++E +R++ V D++E + + + + D ++I
Sbjct: 6 LMRDLSVEQLENIQQNLEKEMEGKRESLREMVGRRYRDVLEASSEVRHVCSLADKLASDI 65
Query: 121 NGLQLTQPATQGGYGGR 137
++ +T GGR
Sbjct: 66 ANTRVGYQSTHVRTGGR 82
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD--FNNI 120
LMR L Q+ I L++E +R++ V D++E + + + + D ++I
Sbjct: 6 LMRDLSVEQLENIQQNLEKEMEGKRESLREMVGRRYRDVLEASSEVRHVCSLADKLASDI 65
Query: 121 NGLQLTQPATQGGYGGR 137
++ +T GGR
Sbjct: 66 ANTRVGYQSTHVRTGGR 82
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 26.2 bits (55), Expect = 8.6
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 53 RNKIAGFAT-HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDM 111
++KI +A ++++ +R Q R KL+ E ER++ + +++ + ++P
Sbjct: 1590 KHKIMDYAMPYMIQVMRDYQTR--LEKLERSEHERKEE---KAEQQQNNGMTMEPQL--- 1641
Query: 112 LKMLDFNNINGLQLTQPATQGGYGGR 137
ML + Q+T P T GGYGG+
Sbjct: 1642 --MLTYG-APAPQMTYPGTTGGYGGQ 1664
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,698
Number of Sequences: 27539
Number of extensions: 122703
Number of successful extensions: 397
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 17
length of query: 139
length of database: 12,573,161
effective HSP length: 74
effective length of query: 65
effective length of database: 10,535,275
effective search space: 684792875
effective search space used: 684792875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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