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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
         (139 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   139   8e-34
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   2.1  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   2.1  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    28   2.1  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   2.1  
Z34801-3|CAA84327.1|  520|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   3.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   3.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   3.7  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    27   6.5  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     27   6.5  
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    26   8.6  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  139 bits (336), Expect = 8e-34
 Identities = 66/99 (66%), Positives = 78/99 (78%), Gaps = 3/99 (3%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 83  ERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 118
           ERERRDNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 77  ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 64  MRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNING 122
           +R L   +V  ++ ++  EE+ R       +++   DI + D   ++ML+ +   N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
           protein R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 32  LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89
           LD+  N+R   ++AII     + K+   A   H   +LR S +R + + L+E E  R  +
Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453

Query: 90  YVPEVSALEHDIIEVDPDTKDMLKML 115
            V +    +  I       +D  KML
Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479


>Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
           protein R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 32  LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89
           LD+  N+R   ++AII     + K+   A   H   +LR S +R + + L+E E  R  +
Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453

Query: 90  YVPEVSALEHDIIEVDPDTKDMLKML 115
            V +    +  I       +D  KML
Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
          carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 49 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87
          T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 73  RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 125
           RG  ++  E+ + R D+    Y  + +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
           spectrin homolog Sma1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 32  LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89
           LD+  N+R   ++AII     + K+   A   H   +LR S +R + + L+E E  R  +
Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453

Query: 90  YVPEVSALEHDIIEVDPDTKDMLKML 115
            V +    +  I       +D  KML
Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp
          (synaptic vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 49 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87
          T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>Z34801-3|CAA84327.1|  520|Caenorhabditis elegans Hypothetical
           protein F59A2.2 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 33  DFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRD 88
           D D N+R  +++  +  + +   +      ++ +L  ++ +G+   L+EEER+R +
Sbjct: 337 DADANQRWSDKVEKV--QAMNKALESEKNEMIEKLSEAKAQGVKAVLEEEERKRTE 390


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 62   HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
            HL ++ +H +   I++K  E++ +   +  PE+S +E
Sbjct: 8580 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8616


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 62   HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
            HL ++ +H +   I++K  E++ +   +  PE+S +E
Sbjct: 8600 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8636


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 62   HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
            HL ++ +H +   I++K  E++ +   +  PE+S +E
Sbjct: 8600 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8636


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)

Query: 108 TKDMLKMLDFNNINGLQL 125
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 63  LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98
           ++ R  +SQ+  +SI L+ E +ER+D+Y   + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 63  LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD--FNNI 120
           LMR L   Q+  I   L++E   +R++    V     D++E   + + +  + D   ++I
Sbjct: 6   LMRDLSVEQLENIQQNLEKEMEGKRESLREMVGRRYRDVLEASSEVRHVCSLADKLASDI 65

Query: 121 NGLQLTQPATQGGYGGR 137
              ++   +T    GGR
Sbjct: 66  ANTRVGYQSTHVRTGGR 82


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 63  LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD--FNNI 120
           LMR L   Q+  I   L++E   +R++    V     D++E   + + +  + D   ++I
Sbjct: 6   LMRDLSVEQLENIQQNLEKEMEGKRESLREMVGRRYRDVLEASSEVRHVCSLADKLASDI 65

Query: 121 NGLQLTQPATQGGYGGR 137
              ++   +T    GGR
Sbjct: 66  ANTRVGYQSTHVRTGGR 82


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 53   RNKIAGFAT-HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDM 111
            ++KI  +A  ++++ +R  Q R    KL+  E ER++    +    +++ + ++P     
Sbjct: 1590 KHKIMDYAMPYMIQVMRDYQTR--LEKLERSEHERKEE---KAEQQQNNGMTMEPQL--- 1641

Query: 112  LKMLDFNNINGLQLTQPATQGGYGGR 137
              ML +      Q+T P T GGYGG+
Sbjct: 1642 --MLTYG-APAPQMTYPGTTGGYGGQ 1664


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,698
Number of Sequences: 27539
Number of extensions: 122703
Number of successful extensions: 397
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 17
length of query: 139
length of database: 12,573,161
effective HSP length: 74
effective length of query: 65
effective length of database: 10,535,275
effective search space: 684792875
effective search space used: 684792875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)

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