BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein S17e (139 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 139 8e-34 U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 29 1.2 Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 2.1 Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 2.1 AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 2.1 AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 28 2.1 AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 2.1 AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 2.1 Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical pr... 27 3.7 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 3.7 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 3.7 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 3.7 Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 4.9 Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 27 6.5 AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 27 6.5 AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 27 6.5 Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 26 8.6 >AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal protein, small subunitprotein 17 protein. Length = 130 Score = 139 bits (336), Expect = 8e-34 Identities = 66/99 (66%), Positives = 78/99 (78%), Gaps = 3/99 (3%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQEE Sbjct: 17 IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76 Query: 83 ERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 118 ERERRDNY+PE+S ++ I+VD DT DMLK FN Sbjct: 77 ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115 >U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical protein F02E8.5 protein. Length = 578 Score = 29.1 bits (62), Expect = 1.2 Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 64 MRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNING 122 +R L +V ++ ++ EE+ R +++ DI + D ++ML+ + N NG Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272 >Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein R31.1 protein. Length = 4063 Score = 28.3 bits (60), Expect = 2.1 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Query: 32 LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89 LD+ N+R ++AII + K+ A H +LR S +R + + L+E E R + Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453 Query: 90 YVPEVSALEHDIIEVDPDTKDMLKML 115 V + + I +D KML Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479 >Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein R31.1 protein. Length = 4063 Score = 28.3 bits (60), Expect = 2.1 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Query: 32 LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89 LD+ N+R ++AII + K+ A H +LR S +R + + L+E E R + Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453 Query: 90 YVPEVSALEHDIIEVDPDTKDMLKML 115 V + + I +D KML Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479 >AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory carrier membrane protein protein. Length = 335 Score = 28.3 bits (60), Expect = 2.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Query: 49 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87 T L NK AG L R+ + + R ++++EEE +RR Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95 >AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical protein F46F5.11 protein. Length = 796 Score = 28.3 bits (60), Expect = 2.1 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 73 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 125 RG ++ E+ + R D+ Y + +A++ ++ DPD + ++L ++ NGL L Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243 >AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain spectrin homolog Sma1 protein. Length = 4063 Score = 28.3 bits (60), Expect = 2.1 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Query: 32 LDFDTNKRICEEIAIIPTKPLRNKIAGFAT--HLMRRLRHSQVRGISIKLQEEERERRDN 89 LD+ N+R ++AII + K+ A H +LR S +R + + L+E E R + Sbjct: 397 LDYAENER---QVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSAS 453 Query: 90 YVPEVSALEHDIIEVDPDTKDMLKML 115 V + + I +D KML Sbjct: 454 QVEKTLKKQQAISTDILAREDRFKML 479 >AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic vesicle protein)homolog protein 1 protein. Length = 335 Score = 28.3 bits (60), Expect = 2.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Query: 49 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 87 T L NK AG L R+ + + R ++++EEE +RR Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95 >Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical protein F59A2.2 protein. Length = 520 Score = 27.5 bits (58), Expect = 3.7 Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 33 DFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRD 88 D D N+R +++ + + + + ++ +L ++ +G+ L+EEER+R + Sbjct: 337 DADANQRWSDKVEKV--QAMNKALESEKNEMIEKLSEAKAQGVKAVLEEEERKRTE 390 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 27.5 bits (58), Expect = 3.7 Identities = 10/37 (27%), Positives = 22/37 (59%) Query: 62 HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98 HL ++ +H + I++K E++ + + PE+S +E Sbjct: 8580 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8616 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 27.5 bits (58), Expect = 3.7 Identities = 10/37 (27%), Positives = 22/37 (59%) Query: 62 HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98 HL ++ +H + I++K E++ + + PE+S +E Sbjct: 8600 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8636 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 27.5 bits (58), Expect = 3.7 Identities = 10/37 (27%), Positives = 22/37 (59%) Query: 62 HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98 HL ++ +H + I++K E++ + + PE+S +E Sbjct: 8600 HLKKKKKHHKKEKIAVKETEQDEKTVSHLKPEISGME 8636 >Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical protein W05H5.5 protein. Length = 358 Score = 27.1 bits (57), Expect = 4.9 Identities = 11/18 (61%), Positives = 15/18 (83%) Query: 108 TKDMLKMLDFNNINGLQL 125 T D+ KML+ NN+NGL+L Sbjct: 107 TDDIGKMLNVNNLNGLEL 124 >Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical protein C03C10.4 protein. Length = 244 Score = 26.6 bits (56), Expect = 6.5 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 98 ++ R +SQ+ +SI L+ E +ER+D+Y + ALE Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217 >AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell migration protein 30 protein. Length = 787 Score = 26.6 bits (56), Expect = 6.5 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD--FNNI 120 LMR L Q+ I L++E +R++ V D++E + + + + D ++I Sbjct: 6 LMRDLSVEQLENIQQNLEKEMEGKRESLREMVGRRYRDVLEASSEVRHVCSLADKLASDI 65 Query: 121 NGLQLTQPATQGGYGGR 137 ++ +T GGR Sbjct: 66 ANTRVGYQSTHVRTGGR 82 >AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. Length = 787 Score = 26.6 bits (56), Expect = 6.5 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 63 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD--FNNI 120 LMR L Q+ I L++E +R++ V D++E + + + + D ++I Sbjct: 6 LMRDLSVEQLENIQQNLEKEMEGKRESLREMVGRRYRDVLEASSEVRHVCSLADKLASDI 65 Query: 121 NGLQLTQPATQGGYGGR 137 ++ +T GGR Sbjct: 66 ANTRVGYQSTHVRTGGR 82 >Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein T20G5.1 protein. Length = 1681 Score = 26.2 bits (55), Expect = 8.6 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 12/86 (13%) Query: 53 RNKIAGFAT-HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDM 111 ++KI +A ++++ +R Q R KL+ E ER++ + +++ + ++P Sbjct: 1590 KHKIMDYAMPYMIQVMRDYQTR--LEKLERSEHERKEE---KAEQQQNNGMTMEPQL--- 1641 Query: 112 LKMLDFNNINGLQLTQPATQGGYGGR 137 ML + Q+T P T GGYGG+ Sbjct: 1642 --MLTYG-APAPQMTYPGTTGGYGGQ 1664 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,225,698 Number of Sequences: 27539 Number of extensions: 122703 Number of successful extensions: 397 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 388 Number of HSP's gapped (non-prelim): 17 length of query: 139 length of database: 12,573,161 effective HSP length: 74 effective length of query: 65 effective length of database: 10,535,275 effective search space: 684792875 effective search space used: 684792875 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 55 (26.2 bits)
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