GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
         (139 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   4.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   6.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 37  NKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEE 83
           N++ C EIA   +   R  I   A  L  R+ ++  R   ++ QE E
Sbjct: 91  NRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASAR---LRSQENE 134


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 119 NINGLQLTQPATQGGYGGRRN 139
           N+    LT+P T   YG R N
Sbjct: 196 NVLATSLTEPYTLRNYGRRIN 216


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 76  SIKLQEEERERRDNYVPEVSALEHDIIE 103
           ++ L+ EE++RR   + +V  L +D I+
Sbjct: 115 NVCLKFEEQKRRKKSLDDVKILRNDRID 142


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,465
Number of Sequences: 429
Number of extensions: 1584
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 139
length of database: 140,377
effective HSP length: 52
effective length of query: 87
effective length of database: 118,069
effective search space: 10272003
effective search space used: 10272003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)