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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
         (139 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)           138   1e-33
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...   136   5e-33
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...   136   5e-33
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)           134   2e-32
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...   134   2e-32
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi...    32   0.12 
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ...    30   0.50 
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ...    30   0.50 
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    28   2.0  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    28   2.0  
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    28   2.7  
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ...    27   3.5  
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    27   3.5  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    27   3.5  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    27   3.5  
At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containi...    26   8.1  

>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score =  138 bits (334), Expect = 1e-33
 Identities = 67/119 (56%), Positives = 91/119 (76%), Gaps = 4/119 (3%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGR 137
           ERERR ++VP+ SA++ D I+VD +T +ML  L  ++ +G+   +P    A    +GGR
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIAAFGGR 135


>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  136 bits (329), Expect = 5e-33
 Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 4/120 (3%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGRR 138
           ERERR ++VP+ SA++ D I+VD +T +ML  L  ++  G+   +P    A    +GG R
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGR 136


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  136 bits (329), Expect = 5e-33
 Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 4/120 (3%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGRR 138
           ERERR ++VP+ SA++ D I+VD +T +ML  L  ++  G+   +P    A    +GG R
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGR 136


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score =  134 bits (325), Expect = 2e-32
 Identities = 63/106 (59%), Positives = 84/106 (79%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 128
           ERERR ++VP+ SA++ D I+VD +T +ML  L  ++  G+    P
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score =  134 bits (324), Expect = 2e-32
 Identities = 67/117 (57%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL--TQPATQGGYGGR 137
           ERERR ++VP+ SA++ D ++VD +T +ML  L  ++I G+    TQ A      GR
Sbjct: 77  ERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVFGR 133


>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 790

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 61  THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 112
           T L+    H +   + I LQ+  +E RR  YVP+ S + HD +E D   +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719


>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 74  GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGG 133
           G S+ LQE +R +R+       + E D++ V+   K+++  L  N+++  Q+   A  GG
Sbjct: 138 GRSLSLQERQRVQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVH--QVVSIAGMGG 195

Query: 134 YG 135
            G
Sbjct: 196 IG 197


>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 74  GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGG 133
           G S+ LQE +R +R+       + E D++ V+   K+++  L  N+++  Q+   A  GG
Sbjct: 138 GRSLSLQERQRVQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVH--QVVSIAGMGG 195

Query: 134 YG 135
            G
Sbjct: 196 IG 197


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 30  LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 87
           LTL +D    ICEE A   +K   + +      L + L   ++R  + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 30  LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 87
           LTL +D    ICEE A   +K   + +      L + L   ++R  + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
           +E Y   L +D D +K +  +I   P K    K     T   R L    +     + +E 
Sbjct: 423 LEDYMEELMVDVDPSKAVINKIPTPPPKSF--KETNMVTSKSRILEFRNLTFYKDEAKEM 480

Query: 83  ERERRDNYVPEVSALEHDI 101
             ++   YVP+   + HDI
Sbjct: 481 AAKKGVVYVPDTRFVLHDI 499


>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 908

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 23  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI-SIKLQE 81
           ++K+  RL        ++  +I  I TK + + I    +  ++++    + G+ S+ LQE
Sbjct: 91  VKKHVRRLARFLTDRHKVASDIEGI-TKRISDVIGEMQSFGIQQI----IDGVRSLSLQE 145

Query: 82  EERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYG 135
            +R +R+       + E D++ V+   ++++  L  N+I   Q+   A  GG G
Sbjct: 146 RQRVQREIRQTYPDSSESDLVGVEQSVEELVGHLVENDI--YQVVSIAGMGGIG 197


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 77  IKLQEEERERRDNYVPEVSALEHDIIEVDPD 107
           +K  EEE   R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538


>At2g36380.1 68415.m04464 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 27  YTRLTLDFDTNKR---ICEEIAIIPTKPLRNKIAG 58
           + RL+ D DT  R   + E + ++  KPLRN I G
Sbjct: 963 WLRLSADIDTKTREMFVEEVMELVELKPLRNSIVG 997


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
           huntingtin interacting protein 1 [Homo sapiens]
           GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 27  YTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERER 86
           Y    +D + N  I    ++  T+ L N   G  +H + ++  ++     +KL  E+R  
Sbjct: 265 YLEDAIDIEGNGTIVVSPSLAITEMLNNDDGGLCSHDLNKITVTETINPDLKLVREDRLD 324

Query: 87  RDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 119
            D  V     L++ +   D  ++  +  L  NN
Sbjct: 325 TDLSVMNEKMLKNHV--GDSSSESAVAALSMNN 355


>At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 890

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 83  ERERRDNYVPEVSALEHDIIEVDPDTKDML 112
           ER R++ YVP+ S + H+   V+ D K++L
Sbjct: 792 ERMRKEGYVPDTSCVLHN---VEEDEKEIL 818


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,806
Number of Sequences: 28952
Number of extensions: 115831
Number of successful extensions: 345
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 16
length of query: 139
length of database: 12,070,560
effective HSP length: 74
effective length of query: 65
effective length of database: 9,928,112
effective search space: 645327280
effective search space used: 645327280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)

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