BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein S17e (139 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 138 1e-33 At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 136 5e-33 At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 136 5e-33 At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 134 2e-32 At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 134 2e-32 At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 32 0.12 At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ... 30 0.50 At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ... 30 0.50 At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.0 At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.0 At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 28 2.7 At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ... 27 3.5 At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 3.5 At2g36380.1 68415.m04464 ABC transporter family protein related ... 27 3.5 At1g77300.1 68414.m09002 SET domain-containing protein similar t... 27 3.5 At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containi... 26 8.1 >At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) Length = 140 Score = 138 bits (334), Expect = 1e-33 Identities = 67/119 (56%), Positives = 91/119 (76%), Gaps = 4/119 (3%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGR 137 ERERR ++VP+ SA++ D I+VD +T +ML L ++ +G+ +P A +GGR Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIAAFGGR 135 >At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ribosomal protein S17, Lycopersicon esculentum, EMBL:AF161704 Length = 141 Score = 136 bits (329), Expect = 5e-33 Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 4/120 (3%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGRR 138 ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P A +GG R Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGR 136 >At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ribosomal protein S17, Lycopersicon esculentum, EMBL:AF161704 Length = 141 Score = 136 bits (329), Expect = 5e-33 Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 4/120 (3%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGRR 138 ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P A +GG R Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGR 136 >At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) Length = 141 Score = 134 bits (325), Expect = 2e-32 Identities = 63/106 (59%), Positives = 84/106 (79%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 128 ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ P Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122 >At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon esculentum] Length = 140 Score = 134 bits (324), Expect = 2e-32 Identities = 67/117 (57%), Positives = 89/117 (76%), Gaps = 2/117 (1%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76 Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL--TQPATQGGYGGR 137 ERERR ++VP+ SA++ D ++VD +T +ML L ++I G+ TQ A GR Sbjct: 77 ERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVFGR 133 >At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 790 Score = 32.3 bits (70), Expect = 0.12 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 61 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 112 T L+ H + + I LQ+ +E RR YVP+ S + HD +E D +DML Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719 >At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Closest Col-0 homolog to RPP8 Length = 908 Score = 30.3 bits (65), Expect = 0.50 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 74 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGG 133 G S+ LQE +R +R+ + E D++ V+ K+++ L N+++ Q+ A GG Sbjct: 138 GRSLSLQERQRVQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVH--QVVSIAGMGG 195 Query: 134 YG 135 G Sbjct: 196 IG 197 >At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Closest Col-0 homolog to RPP8 Length = 908 Score = 30.3 bits (65), Expect = 0.50 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 74 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGG 133 G S+ LQE +R +R+ + E D++ V+ K+++ L N+++ Q+ A GG Sbjct: 138 GRSLSLQERQRVQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVH--QVVSIAGMGG 195 Query: 134 YG 135 G Sbjct: 196 IG 197 >At2g46020.2 68415.m05725 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2193 Score = 28.3 bits (60), Expect = 2.0 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 30 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 87 LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737 >At2g46020.1 68415.m05724 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2192 Score = 28.3 bits (60), Expect = 2.0 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 30 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 87 LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737 >At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 579 Score = 27.9 bits (59), Expect = 2.7 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82 +E Y L +D D +K + +I P K K T R L + + +E Sbjct: 423 LEDYMEELMVDVDPSKAVINKIPTPPPKSF--KETNMVTSKSRILEFRNLTFYKDEAKEM 480 Query: 83 ERERRDNYVPEVSALEHDI 101 ++ YVP+ + HDI Sbjct: 481 AAKKGVVYVPDTRFVLHDI 499 >At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Length = 908 Score = 27.5 bits (58), Expect = 3.5 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 8/114 (7%) Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI-SIKLQE 81 ++K+ RL ++ +I I TK + + I + ++++ + G+ S+ LQE Sbjct: 91 VKKHVRRLARFLTDRHKVASDIEGI-TKRISDVIGEMQSFGIQQI----IDGVRSLSLQE 145 Query: 82 EERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYG 135 +R +R+ + E D++ V+ ++++ L N+I Q+ A GG G Sbjct: 146 RQRVQREIRQTYPDSSESDLVGVEQSVEELVGHLVENDI--YQVVSIAGMGGIG 197 >At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 612 Score = 27.5 bits (58), Expect = 3.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 77 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 107 +K EEE R+ YVP+ S + HD+ E + + Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538 >At2g36380.1 68415.m04464 ABC transporter family protein related to multi drug resistance proteins and P-glycoproteins Length = 1453 Score = 27.5 bits (58), Expect = 3.5 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Query: 27 YTRLTLDFDTNKR---ICEEIAIIPTKPLRNKIAG 58 + RL+ D DT R + E + ++ KPLRN I G Sbjct: 963 WLRLSADIDTKTREMFVEEVMELVELKPLRNSIVG 997 >At1g77300.1 68414.m09002 SET domain-containing protein similar to huntingtin interacting protein 1 [Homo sapiens] GI:12697196; contains Pfam profile PF00856: SET domain Length = 1759 Score = 27.5 bits (58), Expect = 3.5 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 27 YTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERER 86 Y +D + N I ++ T+ L N G +H + ++ ++ +KL E+R Sbjct: 265 YLEDAIDIEGNGTIVVSPSLAITEMLNNDDGGLCSHDLNKITVTETINPDLKLVREDRLD 324 Query: 87 RDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 119 D V L++ + D ++ + L NN Sbjct: 325 TDLSVMNEKMLKNHV--GDSSSESAVAALSMNN 355 >At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 890 Score = 26.2 bits (55), Expect = 8.1 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDML 112 ER R++ YVP+ S + H+ V+ D K++L Sbjct: 792 ERMRKEGYVPDTSCVLHN---VEEDEKEIL 818 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,056,806 Number of Sequences: 28952 Number of extensions: 115831 Number of successful extensions: 345 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 337 Number of HSP's gapped (non-prelim): 16 length of query: 139 length of database: 12,070,560 effective HSP length: 74 effective length of query: 65 effective length of database: 9,928,112 effective search space: 645327280 effective search space used: 645327280 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 55 (26.2 bits)
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