Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001483-TA|BGIBMGA001483-PA|IPR001210|Ribosomal protein
S17e
(139 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 138 1e-33
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 136 5e-33
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 136 5e-33
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 134 2e-32
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 134 2e-32
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 32 0.12
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ... 30 0.50
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ... 30 0.50
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.0
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.0
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 28 2.7
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ... 27 3.5
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 3.5
At2g36380.1 68415.m04464 ABC transporter family protein related ... 27 3.5
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 27 3.5
At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containi... 26 8.1
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 138 bits (334), Expect = 1e-33
Identities = 67/119 (56%), Positives = 91/119 (76%), Gaps = 4/119 (3%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGR 137
ERERR ++VP+ SA++ D I+VD +T +ML L ++ +G+ +P A +GGR
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIAAFGGR 135
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 136 bits (329), Expect = 5e-33
Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 4/120 (3%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGRR 138
ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P A +GG R
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGR 136
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 136 bits (329), Expect = 5e-33
Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 4/120 (3%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP----ATQGGYGGRR 138
ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P A +GG R
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGR 136
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 134 bits (325), Expect = 2e-32
Identities = 63/106 (59%), Positives = 84/106 (79%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 128
ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 134 bits (324), Expect = 2e-32
Identities = 67/117 (57%), Positives = 89/117 (76%), Gaps = 2/117 (1%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL--TQPATQGGYGGR 137
ERERR ++VP+ SA++ D ++VD +T +ML L ++I G+ TQ A GR
Sbjct: 77 ERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVFGR 133
>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 790
Score = 32.3 bits (70), Expect = 0.12
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 61 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 112
T L+ H + + I LQ+ +E RR YVP+ S + HD +E D +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719
>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 30.3 bits (65), Expect = 0.50
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 74 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGG 133
G S+ LQE +R +R+ + E D++ V+ K+++ L N+++ Q+ A GG
Sbjct: 138 GRSLSLQERQRVQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVH--QVVSIAGMGG 195
Query: 134 YG 135
G
Sbjct: 196 IG 197
>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 30.3 bits (65), Expect = 0.50
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 74 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGG 133
G S+ LQE +R +R+ + E D++ V+ K+++ L N+++ Q+ A GG
Sbjct: 138 GRSLSLQERQRVQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVH--QVVSIAGMGG 195
Query: 134 YG 135
G
Sbjct: 196 IG 197
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 30 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 87
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 30 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 87
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 82
+E Y L +D D +K + +I P K K T R L + + +E
Sbjct: 423 LEDYMEELMVDVDPSKAVINKIPTPPPKSF--KETNMVTSKSRILEFRNLTFYKDEAKEM 480
Query: 83 ERERRDNYVPEVSALEHDI 101
++ YVP+ + HDI
Sbjct: 481 AAKKGVVYVPDTRFVLHDI 499
>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 908
Score = 27.5 bits (58), Expect = 3.5
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 23 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI-SIKLQE 81
++K+ RL ++ +I I TK + + I + ++++ + G+ S+ LQE
Sbjct: 91 VKKHVRRLARFLTDRHKVASDIEGI-TKRISDVIGEMQSFGIQQI----IDGVRSLSLQE 145
Query: 82 EERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYG 135
+R +R+ + E D++ V+ ++++ L N+I Q+ A GG G
Sbjct: 146 RQRVQREIRQTYPDSSESDLVGVEQSVEELVGHLVENDI--YQVVSIAGMGGIG 197
>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 612
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 77 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 107
+K EEE R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 27 YTRLTLDFDTNKR---ICEEIAIIPTKPLRNKIAG 58
+ RL+ D DT R + E + ++ KPLRN I G
Sbjct: 963 WLRLSADIDTKTREMFVEEVMELVELKPLRNSIVG 997
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 27.5 bits (58), Expect = 3.5
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 27 YTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERER 86
Y +D + N I ++ T+ L N G +H + ++ ++ +KL E+R
Sbjct: 265 YLEDAIDIEGNGTIVVSPSLAITEMLNNDDGGLCSHDLNKITVTETINPDLKLVREDRLD 324
Query: 87 RDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 119
D V L++ + D ++ + L NN
Sbjct: 325 TDLSVMNEKMLKNHV--GDSSSESAVAALSMNN 355
>At3g57430.1 68416.m06394 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 890
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 83 ERERRDNYVPEVSALEHDIIEVDPDTKDML 112
ER R++ YVP+ S + H+ V+ D K++L
Sbjct: 792 ERMRKEGYVPDTSCVLHN---VEEDEKEIL 818
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,806
Number of Sequences: 28952
Number of extensions: 115831
Number of successful extensions: 345
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 16
length of query: 139
length of database: 12,070,560
effective HSP length: 74
effective length of query: 65
effective length of database: 9,928,112
effective search space: 645327280
effective search space used: 645327280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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