Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001482-TA|BGIBMGA001482-PA|undefined
(79 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 1.2
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 24 2.1
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 24 2.1
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 24 2.8
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 23 3.7
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 23 4.8
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 23 6.4
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 23 6.4
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 23 6.4
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 22 8.5
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 22 8.5
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 22 8.5
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 1.2
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 29 NPWAVKDKDGNVMKTEFPFQCKEGVCVFARNKNTENSTSNEADQSED 75
N W+ K D ++ + C+E + + KN E N +D
Sbjct: 108 NEWSKKTNDAQILLNSYETFCEEEALIEEKLKNIEIFEKNFVIMDDD 154
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 24.2 bits (50), Expect = 2.1
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 59 NKNTENSTSNEADQSED 75
N+NT++STS +++ ED
Sbjct: 101 NENTQDSTSESSEEEED 117
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 20 VQPYILRFWNPWAVKDKDGNVMKTE 44
V+ Y+L+ PW +K K G+ T+
Sbjct: 488 VEAYVLKGRVPWTLKHKGGDAKATK 512
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 23.8 bits (49), Expect = 2.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 7 FIIPLLLFLWH--RFVQPYILRFWNPWAVKDKDGNVMKTEFP-FQCKEGVCVFARN 59
F+ LLF+ V PY+ RFW K G ++ P F + C F+++
Sbjct: 265 FVYQCLLFVGKCVNRVTPYLERFWFKCHYGSKLGTALQVAGPGFDVLQMFCYFSQH 320
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.4 bits (48), Expect = 3.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 2 VCVPCFIIPLLLFLWHRF 19
+C+ CFI+ LF+W F
Sbjct: 712 LCISCFIMRHHLFVWSVF 729
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 23.0 bits (47), Expect = 4.8
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 3/15 (20%)
Query: 23 YILR---FWNPWAVK 34
Y+LR +WNPWA K
Sbjct: 223 YVLRRKHWWNPWAEK 237
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 22.6 bits (46), Expect = 6.4
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 4 VPCFIIPLLLFLWHRFVQPYIL 25
VP I LLL WHR QP +L
Sbjct: 310 VPAKISSLLLNFWHR-NQPLVL 330
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 22.6 bits (46), Expect = 6.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 15 LWHRFVQPYILRFWNPWAV 33
+W ++ PY + FW+ AV
Sbjct: 202 IWQPWLYPYFMCFWSLGAV 220
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 22.6 bits (46), Expect = 6.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 18 RFVQPYILRFWNPWAVKDKDGNVMK 42
+ P IL W V D+DGN K
Sbjct: 96 KVADPKILGEWAGLCVLDRDGNARK 120
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 22.2 bits (45), Expect = 8.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 42 KTEFPFQCKEGVCVFARNKNTENSTSNEADQSEDQ 76
++ P Q K A+N+ T +NE D E++
Sbjct: 130 ESPIPQQVKRDGTTDAKNEETTKPENNEKDDFEEE 164
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 22.2 bits (45), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 58 RNKNTENSTSNEADQSEDQ 76
RN NT+N+ S A ED+
Sbjct: 152 RNLNTQNNQSTLASNHEDE 170
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 22.2 bits (45), Expect = 8.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 18 RFVQPYILRFWNPWAVKDKDGNVMK 42
+ P +L W V D+DGN K
Sbjct: 93 KVADPKVLGEWAGLCVLDRDGNARK 117
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.138 0.468
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,618
Number of Sequences: 5004
Number of extensions: 14118
Number of successful extensions: 57
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 12
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)
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