GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001482-TA|BGIBMGA001482-PA|undefined
         (79 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128           27   2.5  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    25   5.8  
01_01_0186 + 1598046-1598234,1599215-1599277,1599359-1599448,159...    25   5.8  
09_04_0679 - 19398696-19399303,19400425-19400596                       25   7.7  
06_01_1007 + 7846266-7846526,7848368-7848420,7849231-7849432,784...    25   7.7  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    25   7.7  

>08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128
          Length = 118

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 38 GNVMKTEFPFQCKEGVCVFARN 59
          GNV ++  PFQC +  C  A+N
Sbjct: 59 GNVARSRCPFQCCKSCCYKAQN 80


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 44  EFPFQCKEGVCVFARNKNTENSTSNEADQSE 74
           E PF C+ G C     K     +S E DQSE
Sbjct: 910 ELPFSCRAGSCSTCAGK----MSSGEVDQSE 936


>01_01_0186 +
          1598046-1598234,1599215-1599277,1599359-1599448,
          1599968-1600093,1600583-1600726,1600845-1601255,
          1601283-1601364,1601403-1601491,1602250-1602471,
          1602552-1602827,1603116-1603253,1603772-1604077,
          1604203-1604421
          Length = 784

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)

Query: 7  FIIPLLLFLWHRFVQPYILRFWN 29
          F++PL+LF W  FV+ +++ F N
Sbjct: 30 FLVPLVLFAW--FVERWVVPFSN 50


>09_04_0679 - 19398696-19399303,19400425-19400596
          Length = 259

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 19  FVQPYILRFWNPWAVKDKDGNVMKTEFPFQCKEGVCVFAR 58
           F  P++  FW P+ +    G  +   +PF   + +  F R
Sbjct: 185 FFWPFLPLFWPPYRLPGGGGGTVSFPWPFPVPDWLVPFLR 224


>06_01_1007 +
           7846266-7846526,7848368-7848420,7849231-7849432,
           7849526-7849609,7850005-7850188,7850605-7850741,
           7850875-7850939,7851093-7851762
          Length = 551

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 46  PFQCKEGVCVFARNKNTENSTSNEAD 71
           P  CKEGV V    +  + + SN ++
Sbjct: 195 PMSCKEGVTVIYSKRGGDTAASNHSE 220


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 26  RFWNPWA-----VKDKDGNVMKTEFPFQCKEGV 53
           + WNPW      V+D +  +M TE  F  +EG+
Sbjct: 627 KVWNPWRNNPLKVRDLNERLMMTERAFTDREGL 659


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.138    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,475
Number of Sequences: 37544
Number of extensions: 78848
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)