GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001482-TA|BGIBMGA001482-PA|undefined
         (79 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.17 
SB_33071| Best HMM Match : PQ-loop (HMM E-Value=3.2e-14)               28   1.2  
SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)                     25   6.5  
SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)                   25   6.5  
SB_5921| Best HMM Match : Lipoprotein_9 (HMM E-Value=5.2)              25   6.5  

>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 7   FIIPLLLFLWHRFVQPYILRFWNPWAVKDKDGNVMKTEFPFQCKEGVCVFARNKNTENST 66
           F++P+ + L + F+  +    W+  AV+ K     +      CK G+     N+N  N  
Sbjct: 569 FLLPVAIILLYNFIALFHT-MWHIRAVRKKVPLTERVAVLVSCKMGIDNNNNNENNNNDK 627

Query: 67  SNEADQSED 75
            ++ D  +D
Sbjct: 628 DDDIDDDDD 636


>SB_33071| Best HMM Match : PQ-loop (HMM E-Value=3.2e-14)
          Length = 125

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 20 VQPYILRFWNPWAVKDKDG 38
          V PYI ++W+ W  +D DG
Sbjct: 6  VVPYIPQYWDIWRTRDADG 24


>SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 2   VCVPCFIIPLLLFLWHRFVQPYILRFWNPW 31
           V VP   + LL   W   + PY    W PW
Sbjct: 215 VIVPNDSLHLLPLTWQNSLAPYDSSVWRPW 244


>SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)
          Length = 889

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 16  WHRFVQPYILRFWNPWAVKDKDGNVMKTEFPFQCKEGVCVFARNKNTE 63
           +HR   PYI++ ++ W    +DG V +     +C   +C     + T+
Sbjct: 398 YHRREGPYIMQCYDYWYKHRRDGRVSE-----KCTTNLCFLIDTRTTQ 440


>SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
          Length = 318

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)

Query: 20 VQPYILRFWNPWAVKDKDGN 39
          V PY  R  NPW  + KDGN
Sbjct: 76 VLPY--RLGNPWITRKKDGN 93


>SB_5921| Best HMM Match : Lipoprotein_9 (HMM E-Value=5.2)
          Length = 220

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 7   FIIPLLLFLWHRFVQPYILRFW 28
           F++PLL+F+   FV P     W
Sbjct: 197 FVLPLLIFIMLSFVAPIASMLW 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.138    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,892
Number of Sequences: 59808
Number of extensions: 99338
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 16,821,457
effective HSP length: 57
effective length of query: 22
effective length of database: 13,412,401
effective search space: 295072822
effective search space used: 295072822
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)