GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001482-TA|BGIBMGA001482-PA|undefined
         (79 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical pr...    26   2.8  
U40417-8|AAP13768.1|  103|Caenorhabditis elegans Saposin-like pr...    26   3.6  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    25   6.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    25   6.4  
Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    25   8.4  
U58749-1|AAK18877.1|  238|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 48  QCKEGVCVFARNKNTENSTSNEADQSE 74
           Q +EG  V+  N N  N+  +E D+SE
Sbjct: 466 QMEEGTGVYTSNNNNNNNNYDEYDRSE 492


>Z81508-6|CAB04147.1|  338|Caenorhabditis elegans Hypothetical
           protein F20E11.10 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 6   CFIIPLLLFLWHRFVQPY 23
           CFIIPLL F W  F++ Y
Sbjct: 257 CFIIPLLTF-WFAFLEGY 273


>U40417-8|AAP13768.1|  103|Caenorhabditis elegans Saposin-like
          protein family protein5 protein.
          Length = 103

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 35 DKDGNVMKTEFPFQCKE 51
          DKD NV+K +F  +CK+
Sbjct: 43 DKDANVIKKDFDAECKK 59


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 47   FQCKEGVCVFARNK-NTENSTSNEADQSEDQKTK 79
            FQCK G C+    K + EN   +E+D+ +++  K
Sbjct: 1061 FQCKNGRCIPKEWKCDGENDCLDESDEIDEKGDK 1094


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 56   FARNKNTENSTSNEADQSEDQ 76
            F R  ++ NS SNE+  S+DQ
Sbjct: 1424 FVRRPHSRNSYSNESTSSDDQ 1444


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 47   FQCKEGVCVFARNK-NTENSTSNEADQSEDQKTK 79
            FQCK G C+    K + EN   +E+D+ +++  K
Sbjct: 1061 FQCKNGRCIPKEWKCDGENDCLDESDEIDEKGDK 1094


>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 34  KDKDGNVMKTEFPFQCKEGVCVFARNKNTENSTSNEADQSE 74
           K  D NV++  F  Q     C +  ++++  S+S+ +  S+
Sbjct: 477 KQIDFNVLQPSFKAQFLANTCTYTTDQSSSRSSSSSSSSSK 517


>U58749-1|AAK18877.1|  238|Caenorhabditis elegans Hypothetical
           protein B0496.6 protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 4   VPCFIIPLLLFLWHRFVQPY 23
           +PC+ +  LLFL   F+ PY
Sbjct: 104 IPCYYVLKLLFLLFFFMPPY 123


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.138    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,256
Number of Sequences: 27539
Number of extensions: 77617
Number of successful extensions: 265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 8
length of query: 79
length of database: 12,573,161
effective HSP length: 59
effective length of query: 20
effective length of database: 10,948,360
effective search space: 218967200
effective search space used: 218967200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)