Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001481-TA|BGIBMGA001481-PA|IPR005033|YEATS
         (238 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.90 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   2.8  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   3.6  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    22   3.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   3.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   8.4  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 204 PPSDPIYAVPELP 216
           PPS+PIY  PE P
Sbjct: 104 PPSNPIYIHPESP 116


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 164 AEIRKQLRAVEMTDDEILQVSRLY 187
           +EI K  + VE+TD++I+  + L+
Sbjct: 253 SEIGKNTKQVELTDEKIVAQALLF 276


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 52  KYSSRPKKIQLKYSLQI 68
           KY SRP++IQ+  +L +
Sbjct: 111 KYLSRPRRIQIAENLNL 127


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 155 CPKCGESTTAEIRKQL 170
           C KC E   A +RK L
Sbjct: 70  CAKCNEKVKANVRKVL 85


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 203 PPPSDPIYAVPELPARLRE 221
           P  ++P+Y+  ++P ++RE
Sbjct: 12  PEETEPLYSSTQMPEKVRE 30


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 203 PPPSDPIYAVPELPARLRE 221
           P  ++P+Y+  ++P ++RE
Sbjct: 12  PEETEPLYSSTQMPEKVRE 30


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 52  KYSSRPKKIQLKYSLQI 68
           KY SRP++IQ+  +L +
Sbjct: 102 KYLSRPRRIQIAENLNL 118


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 52  KYSSRPKKIQLKYSLQI-ENNTKSSSESRCIYYDFEKPSE 90
           KY  RP++IQ+  +L + E   K   ++R + +  E+ ++
Sbjct: 108 KYLCRPRRIQMAQNLNLTERQIKIWFQNRRMKFKKEEKNK 147


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 52  KYSSRPKKIQLKYSLQI-ENNTKSSSESRCIYYDFEKPSE 90
           KY  RP++IQ+  +L + E   K   ++R + +  E+ ++
Sbjct: 128 KYLCRPRRIQMAQNLNLTERQIKIWFQNRRMKFKKEEKNK 167


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,012
Number of Sequences: 317
Number of extensions: 1906
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 238
length of database: 114,650
effective HSP length: 55
effective length of query: 183
effective length of database: 97,215
effective search space: 17790345
effective search space used: 17790345
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)