Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001481-TA|BGIBMGA001481-PA|IPR005033|YEATS
         (238 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45600.1 68418.m05603 YEATS family protein contains Pfam doma...    32   0.30 
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    32   0.39 
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta...    31   0.91 
At2g30370.1 68415.m03696 allergen-related weak similarity to pol...    28   4.8  
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp...    28   6.4  
At2g18000.1 68415.m02092 YEATS family protein contains Pfam doma...    28   6.4  
At1g12330.1 68414.m01425 expressed protein                             28   6.4  

>At5g45600.1 68418.m05603 YEATS family protein contains Pfam domain
           PF03366: YEATS family
          Length = 268

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 27  VLQEPPYEIQESGCASIEIPIQIYLKYSSRPKKIQLKYSLQI 68
           V++EPP+E+ ESG    EI + ++       K + L + L++
Sbjct: 102 VIEEPPFEVSESGWGEFEIAMTLHFHSDVCDKPLSLYHHLKL 143


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query: 174 EMTDDEILQVSRLYISYTSYEKSANALELPPPSDPIYAVPELPARLREALKAAEIDRTSS 233
           E ++ + +Q+    +  +S  +   A   PPP  P   VP+ P R   +++  ++   + 
Sbjct: 225 EESEPKEIQIDTFVVKPSSPPQQPPATPPPPPPPPPVEVPQKPRRTHRSVRNRDLQENAK 284

Query: 234 RGEVR 238
           R E +
Sbjct: 285 RSETK 289


>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam domains PF00226:
           DnaJ domain and PF00096: Zinc finger, C2H2 type
          Length = 630

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 155 CPKCGESTTAEIRKQLRAVEMTDDEILQVSRLYISYTSYEKSANALELPPPSDPIYAVPE 214
           C  C +   +E  KQ +  E +     +V+ L  S+T YE+     E+  P D   +V E
Sbjct: 310 CIVCSKKFKSE--KQWKNHEQSKKHKEKVAELRESFTDYEEENEEEEIDGPLDSPESVEE 367

Query: 215 LPARLREALKAAEIDR 230
           L  +L+E L     +R
Sbjct: 368 LHEKLQEELNIDNEER 383


>At2g30370.1 68415.m03696 allergen-related weak similarity to pollen
           major allergen 2 protein [Juniperus ashei]
           gi|9955725|emb|CAC05582
          Length = 230

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 80  CIYYDFEKPSEQLCRALMSGGGELIARARAKHLLELLSGAGTKPPR 125
           C+ YD ++  E     ++    ++  R++   L  +L G G+ PPR
Sbjct: 141 CLAYDLDRVEEGKSTVVIKKTRKIGDRSKEAELRRILRGLGSSPPR 186


>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           contains weak similarity to Conserved oligomeric Golgi
           complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
          Length = 836

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 157 KCGESTTAEIRKQLRAVEMTDDEILQVSRLYISYTSYEKSANALELPP 204
           K  E  TA    QLR ++   D   Q   + I Y S   SA ++ +PP
Sbjct: 744 KVAEGATALYMDQLRGIQYISDRGAQQLSVDIEYLSNVLSALSMPIPP 791


>At2g18000.1 68415.m02092 YEATS family protein contains Pfam domain
           PF03366: YEATS family
          Length = 202

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 27  VLQEPPYEIQESGCASIEIPIQIYLKYSSRPKKIQLKYSLQI 68
           V+  PP+ + E G    +I I ++       KK++L + L++
Sbjct: 98  VVDAPPFALSECGWGEFKIDITVFFHTDVCEKKLELSHVLKL 139


>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 168 KQLRAVEMTDDEILQVSRLYISYTSYEKSANALEL 202
           K ++A +  +D +++ SRL  S    EK  N LE+
Sbjct: 184 KLIQATKKKEDAVIEASRLKSSMAELEKKLNKLEI 218


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,323,311
Number of Sequences: 28952
Number of extensions: 203133
Number of successful extensions: 533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 7
length of query: 238
length of database: 12,070,560
effective HSP length: 79
effective length of query: 159
effective length of database: 9,783,352
effective search space: 1555552968
effective search space used: 1555552968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)