GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001481-TA|BGIBMGA001481-PA|IPR005033|YEATS
         (238 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    35   0.051
01_07_0026 + 40576826-40577114,40577210-40577354,40577736-405778...    35   0.051
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314...    29   4.4  
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777...    29   4.4  

>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 27  VLQEPPYEIQESGCASIEIPIQIYLKYSSRPKKIQLKYSLQI--ENNTKSSSESRCIY-- 82
           V+++PP+E+ ESG    EI I +Y       K++ L + L++  E +T   S  + +   
Sbjct: 142 VVEQPPFELSESGWGEFEIAITLYFHSDVCEKRLDLFHQLKLYPEEDTGPQSTKKPVVVE 201

Query: 83  -YD---FEKPSE 90
            YD   F +P+E
Sbjct: 202 TYDEIVFPEPTE 213


>01_07_0026 +
           40576826-40577114,40577210-40577354,40577736-40577801,
           40578012-40578021
          Length = 169

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 26  VVLQEPPYEIQESGCASIEIPIQIYLKYSSR-PKKIQLKYSLQIENNTKSSSESRCI 81
           V + E P  I+ +G  S E+ I  +L+ SSR P +I  ++++Q+  +   +S   C+
Sbjct: 93  VRITETPQPIKNNGHGSSEVEINPWLRSSSRIPNRIHPEFNMQLSKSAPEASRQACL 149


>05_01_0398 +
           3142934-3143110,3143697-3143930,3144180-3144353,
           3144450-3144554,3145274-3145351,3146019-3146100,
           3146519-3146681,3147100-3147435,3147511-3147641,
           3147687-3147729,3147826-3148444,3148523-3148588,
           3149103-3149265,3149557-3149635,3150232-3150431,
           3150972-3151144,3151466-3151559,3152353-3152444,
           3153146-3153436
          Length = 1099

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 51  LKYSSRPKKIQLKYSLQIENN-TKSSSESRCIYYDFEKPSEQLCRALMSGGGE 102
           + Y+S+P+ +Q   +LQ E   TK S   R  Y D +KP  Q   A    G E
Sbjct: 614 ISYNSKPQSVQSSANLQEEEKVTKVSPPRRKAYRD-DKPERQSNYAKKDSGPE 665


>02_05_0943 +
           32976990-32976996,32977119-32977464,32977586-32977796,
           32977997-32978072,32978175-32978277,32978601-32978669,
           32978785-32978821,32978904-32978978,32979052-32979103,
           32979188-32979232,32979342-32979442
          Length = 373

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 18  GAGVGLARVVLQEPPYEIQESGCASIEIPIQIYLKYSSRPKKIQLKYSLQIENNTKSSSE 77
           G   G  R  + +   E   SGC  + +P +I L   +   K  +K+   +E+N+  +SE
Sbjct: 130 GRDNGRTREPVDQHSLEENHSGCTCVAVP-RIILPEDATEPKTGIKFPTLLEDNSNPTSE 188


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,043,939
Number of Sequences: 37544
Number of extensions: 273935
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 4
length of query: 238
length of database: 14,793,348
effective HSP length: 80
effective length of query: 158
effective length of database: 11,789,828
effective search space: 1862792824
effective search space used: 1862792824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)