GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001481-TA|BGIBMGA001481-PA|IPR005033|YEATS
         (238 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)       30   1.5  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                29   2.6  

>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
          Length = 754

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 58  KKIQLKYSLQIEN-NTKSSSESRCIYYDFEKPSEQLCRALMSGGGELIARARAKHLLE 114
           ++ QLKY  Q+E  NT++ +          KP +Q   AL  G G L  + + + LLE
Sbjct: 497 EECQLKYQGQLEQRNTRAYNRPERAAKPSAKPKDQKITALCGGVGTLKRKRQLRQLLE 554


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 32   PYEIQESGCASIEIPIQIYLKYSSRPKKIQ 61
            P E QE+   + E+PI+ +L Y +R K  Q
Sbjct: 1018 PQETQETSAQATEVPIEEFLDYFNRAKSTQ 1047


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,598,929
Number of Sequences: 59808
Number of extensions: 276947
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 3
length of query: 238
length of database: 16,821,457
effective HSP length: 80
effective length of query: 158
effective length of database: 12,036,817
effective search space: 1901817086
effective search space used: 1901817086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)