GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001481-TA|BGIBMGA001481-PA|IPR005033|YEATS
         (238 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77667-2|CAB01234.1|  211|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    29   2.2  
AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical...    29   2.2  
AL132904-11|CAC35844.1|  380|Caenorhabditis elegans Hypothetical...    29   3.9  
AF049709-1|AAC36062.1|  380|Caenorhabditis elegans tyrosylprotei...    29   3.9  
Z92822-1|CAB07300.4|  311|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY466439-1|AAS45709.1|  311|Caenorhabditis elegans SID-2 protein.      28   6.8  

>Z77667-2|CAB01234.1|  211|Caenorhabditis elegans Hypothetical
           protein M04B2.3 protein.
          Length = 211

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 8/83 (9%)

Query: 27  VLQEPPYEIQESGCASIEIPIQIYLKYSSRPKKIQLKYSLQIENNT---KSSSESRCI-Y 82
           V+++PPYE+ E+G    EI I+IY       K I   + L++   T    S ++  C+ +
Sbjct: 72  VVEKPPYEVTETGWGEFEIQIRIYF-VDPNEKPITAFHYLRLFQPTIELPSGNQIVCMEF 130

Query: 83  YD---FEKPSEQLCRALMSGGGE 102
           YD   F++P+ Q+ +AL +  G+
Sbjct: 131 YDEIIFQEPTVQMYKALQASDGK 153


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
            Y6B3B.1 protein.
          Length = 1829

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 159  GESTTAEIRKQLRAVEMTDDEILQVSRLYISYTSYEKSANALELPPPSDPIYAVPELPAR 218
            G   T   ++ L  V+ +++  + +  L     SY+ S N +E+  PS       +LPA 
Sbjct: 1182 GNKGTDPNQQDLMIVKGSEEHSIDLVELIQEKASYQGSENHMEIAQPSVSSEMSSDLPAG 1241

Query: 219  LREALKAAEIDRTSSRGE 236
                LK    D +S   E
Sbjct: 1242 PHHVLKEQRRDTSSFSAE 1259


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
            protein Y6B3B.1 protein.
          Length = 1829

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 159  GESTTAEIRKQLRAVEMTDDEILQVSRLYISYTSYEKSANALELPPPSDPIYAVPELPAR 218
            G   T   ++ L  V+ +++  + +  L     SY+ S N +E+  PS       +LPA 
Sbjct: 1182 GNKGTDPNQQDLMIVKGSEEHSIDLVELIQEKASYQGSENHMEIAQPSVSSEMSSDLPAG 1241

Query: 219  LREALKAAEIDRTSSRGE 236
                LK    D +S   E
Sbjct: 1242 PHHVLKEQRRDTSSFSAE 1259


>AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical
           protein Y23H5B.1 protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 157 KCGESTTAEIRK-------QLRAVEMTDDEILQVSRLYISYTSYEKSANALELPPP 205
           KCG+S    ++        + R  E+T+D I  + ++Y    SY   A  + +PPP
Sbjct: 151 KCGQSALKNLQLHSNFQYVEFRTCELTEDTIRDIFKVYCQAKSYVPLALNIWIPPP 206


>AL132904-11|CAC35844.1|  380|Caenorhabditis elegans Hypothetical
           protein Y111B2A.15 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 87  KPSEQLCRALMSGG--GELIARARAKHLLELLSGAGTKPPRKMNTNKF 132
           K SE+    L   G  GE+I  A +  ++E++ G G + PR  N + F
Sbjct: 115 KKSEKEWNRLQQAGVTGEVINNAISSFIMEIMVGHGDRAPRLCNKDPF 162


>AF049709-1|AAC36062.1|  380|Caenorhabditis elegans tyrosylprotein
           sulfotransferase-A protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 87  KPSEQLCRALMSGG--GELIARARAKHLLELLSGAGTKPPRKMNTNKF 132
           K SE+    L   G  GE+I  A +  ++E++ G G + PR  N + F
Sbjct: 115 KKSEKEWNRLQQAGVTGEVINNAISSFIMEIMVGHGDRAPRLCNKDPF 162


>Z92822-1|CAB07300.4|  311|Caenorhabditis elegans Hypothetical
           protein ZK520.2 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 201 ELPPPSDPIYAVPELP 216
           ++PPP DP+YA P  P
Sbjct: 249 DIPPPRDPMYASPPTP 264


>AY466439-1|AAS45709.1|  311|Caenorhabditis elegans SID-2 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 201 ELPPPSDPIYAVPELP 216
           ++PPP DP+YA P  P
Sbjct: 249 DIPPPRDPMYASPPTP 264


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,533,872
Number of Sequences: 27539
Number of extensions: 213794
Number of successful extensions: 606
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 8
length of query: 238
length of database: 12,573,161
effective HSP length: 79
effective length of query: 159
effective length of database: 10,397,580
effective search space: 1653215220
effective search space used: 1653215220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)