GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001481-TA|BGIBMGA001481-PA|IPR005033|YEATS
         (238 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   1.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 155 CPKCGESTTAEIRKQLRAVEMT 176
           CP+C    T +I+K L  ++ T
Sbjct: 80  CPQCSPEETRQIKKVLSHIQRT 101


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 155 CPKCGESTTAEIRKQLRAVEMT 176
           CP+C    T +I+K L  ++ T
Sbjct: 80  CPQCSPEETRQIKKVLSHIQRT 101


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 157 KCGESTTAEIRKQLRAVEMTD 177
           KC   TT EI+K++  +E  D
Sbjct: 283 KCSMITTPEIKKEVEDMEYDD 303


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,348
Number of Sequences: 429
Number of extensions: 2726
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 238
length of database: 140,377
effective HSP length: 56
effective length of query: 182
effective length of database: 116,353
effective search space: 21176246
effective search space used: 21176246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)