GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
         (480 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    31   0.013
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   3.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 31.5 bits (68), Expect = 0.013
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 4   VTAQGDCSDLRGRVISHGIHYVPGPNSCNLCICDNGLPK----DCKVVLCSPPQDCRSFR 59
           V   GDC     +       +    N C  C C+NG  K    +C  V C  P + +  +
Sbjct: 667 VGPSGDCF-YENKFYRQEAQWTSSDNPCTTCFCENGNNKCFTMECPQVTC--PDNMKLEK 723

Query: 60  VGNNCCEFICLD 71
           V   CC  IC++
Sbjct: 724 VPGECCA-ICVN 734



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 4   VTAQGDCSDLRG--RVISHGIHYVP-----GPNSCNLCICDNGLP---KDCKVVLC 49
           + A+G C +L    +   +G  Y P     G   C  C C+NG P   ++C    C
Sbjct: 839 ILAEGGCPNLYDARKPYVNGSEYHPSIVSLGEYKCVTCKCENGKPTCWRECDKATC 894


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 32  NLCICDNGLPKDCKVVLCSPPQDCR 56
           N+  C NGL  + K  +CS P + +
Sbjct: 134 NMITCPNGLVYNDKAGICSWPDEAK 158


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,911
Number of Sequences: 317
Number of extensions: 4829
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 480
length of database: 114,650
effective HSP length: 59
effective length of query: 421
effective length of database: 95,947
effective search space: 40393687
effective search space used: 40393687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)