GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    28   2.5  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   5.8  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   5.8  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    27   7.7  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 233 LLQAVHTTDARDPNQ-IQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVL 283
           L QAV T  AR  N  I  H + PP   G   A+    S+G +++ G ++ L
Sbjct: 455 LSQAVLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHINDL 506


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 222 LVNPQNCYNTPLLQAVHTTDARDPNQIQHHPLGPPGG 258
           L N  N   TP L + ++  A + + +  H + PP G
Sbjct: 109 LFNSANSIGTPYLSSRNSNSANEASAMAFHNVSPPSG 145


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 288 RPNLYPNPGSLHTPFHRTIPLG----GPGADVRRSFHRAPPPRPHTGRSVP 334
           R +L   PG +  P  R IPLG    G    VR   + APPP    GR  P
Sbjct: 91  RGSLLSGPG-VARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAP 140


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 167 YDEAVAQCRQEVMRIQSEA-AFHRTYPATVESLTRPDEAMQCV 208
           Y + +  C Q + R  + A A++R+  A V +L R DEA +C+
Sbjct: 118 YRQVLNDCAQVLQRDSTHAKAYYRSAKALV-ALKRYDEAKECI 159


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,196
Number of Sequences: 5004
Number of extensions: 79986
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 5
length of query: 480
length of database: 2,362,478
effective HSP length: 75
effective length of query: 405
effective length of database: 1,987,178
effective search space: 804807090
effective search space used: 804807090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)