GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    32   0.88 
09_04_0112 - 14757947-14758972                                         32   1.2  
08_01_1030 + 10431485-10432390                                         30   3.5  
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389...    29   6.2  

>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 253 LGPPGGVGFPSAIRLTGSLGTINNRG--LLSVLHDHDRPNLYPNPGSLH 299
           +G P G G P  +      G +   G  LL ++ DH RP   P PG LH
Sbjct: 24  VGDPYGDGMPPPLPPPPPPGMVPVEGDRLLGLIRDHGRPPFPPPPGMLH 72


>09_04_0112 - 14757947-14758972
          Length = 341

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 299 HTPFHRTIPLGGPGADVRRSFHRAPPPRPHTGRSVP 334
           H  FHR +P G P      +   APP  PH G   P
Sbjct: 85  HRNFHRRLPEGSPPPPPPPALLPAPPMPPHRGEETP 120


>08_01_1030 + 10431485-10432390
          Length = 301

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 106 VRNQKRRRPPHGDDQRSLTSIGIFERYISGSMGYMGGTCETALGAWKPHG-YYLP-RGEA 163
           + N    RP HGDD  +  +     + ++G+  Y     +T  G W  HG + LP RGEA
Sbjct: 174 IENWSVPRPGHGDDHVAAQAAEAEAKKMAGTFSY-----DTERGEWTRHGDWLLPFRGEA 228


>03_06_0203 -
           32337928-32338025,32338745-32338820,32338905-32338971,
           32339181-32339275,32340062-32340151,32340293-32340340,
           32340764-32341069
          Length = 259

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 289 PNLYPNPGSLHTPFHRTIPLGGPGADVRRSFHRAP-PPRPHTGRSVP 334
           P L  +P  L        P   P    RR   R P PPRPH G++VP
Sbjct: 49  PRLVSSPAKLTDDATPPQPPPQPQPGDRRRRPRLPDPPRPHGGKAVP 95


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,771
Number of Sequences: 37544
Number of extensions: 655279
Number of successful extensions: 1308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 4
length of query: 480
length of database: 14,793,348
effective HSP length: 85
effective length of query: 395
effective length of database: 11,602,108
effective search space: 4582832660
effective search space used: 4582832660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)