GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.13 
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     30   3.6  
SB_47228| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.7  
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     30   4.7  
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.7  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   6.3  

>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   TAQGDCSDLRGRVISHGIHYVPGPNSCNLCICDNGLPKDCKVVLCSPPQDCRSFRVGNNC 64
           T+   C D  G+   +G      PN C +C C  G P +C   +C  P    + R+   C
Sbjct: 246 TSAPSCFDEHGQKF-YGERAEWKPNDCTVCTCILGRP-ECVATVCRHPNCVDAVRIKGQC 303

Query: 65  C 65
           C
Sbjct: 304 C 304



 Score = 33.1 bits (72), Expect = 0.51
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 28  PNSCNLCICDNGLPKDCKVVLCSPPQDCRSFRVGNNCCEFICLDDVV 74
           P+ C+ C C      +C   +C  P      +   +CC  IC D++V
Sbjct: 360 PDDCSTCFCKKNGKVECAHQMCGYPVCANPIKETGHCCP-ICRDEIV 405


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 252 PLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPG 296
           P+GP G +G P  + + GS G    +G+     D  +P L  +PG
Sbjct: 168 PVGPVGVIGNPGLMGIQGSEGPYGPQGMTG---DRGKPGLVGDPG 209


>SB_47228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 7   QGDCSDLRGRVISHGIHYVPGP--NSCNLCICDNG 39
           Q DC  +   V   G  Y+P    N C  C CDNG
Sbjct: 548 QNDCGSVDSMVGIGGNSYLPSAAGNICKYCCCDNG 582


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 7   QGDCSDLRGRVISHGIHYVPGPNSCNLCICDNGLPKDCKVVLCSPPQDCRSFR 59
           Q DCS++R R   + I  V G  +   C+    L   CK V C+PPQ CR  R
Sbjct: 244 QTDCSEVRCR--GNSICKVAGGRA--RCV---PLRATCKRVKCTPPQTCRVHR 289


>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 252 PLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPN 294
           P+GPPG +G P    + G  G    +GL  +      P L  N
Sbjct: 157 PIGPPGKIGLPGIPGMKGDKGDPGKQGLTGLTGAPGSPGLPGN 199


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 42/145 (28%), Positives = 54/145 (37%), Gaps = 23/145 (15%)

Query: 196 ESLTR---PDEAMQCVGHGYANIPRPVQQL--VNPQNCYNTP-LLQAVHTTDARDPNQIQ 249
           ++LTR   P    + V H +     P+       P + Y     L A+H T  R P+   
Sbjct: 41  DTLTRTRVPSRPSRTVRHPHTGTKSPMLSTHGTTPSHGYQVNHALYALHNTLTRVPS--- 97

Query: 250 HHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHRTIPLG 309
            HP    G    PS        G   N GLL+V H H       +P  L T  H T P  
Sbjct: 98  -HPCSTHGTT--PSLAH-----GYQVNHGLLTVRHPHTGTK---SP-MLST--HGTTPSL 143

Query: 310 GPGADVRRSFHRAPPPRPHTGRSVP 334
             G  V+ +   A  P  HTG   P
Sbjct: 144 AHGYQVKHALRTAQHPHSHTGTKSP 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,769
Number of Sequences: 59808
Number of extensions: 723083
Number of successful extensions: 4431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4425
Number of HSP's gapped (non-prelim): 11
length of query: 480
length of database: 16,821,457
effective HSP length: 85
effective length of query: 395
effective length of database: 11,737,777
effective search space: 4636421915
effective search space used: 4636421915
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)