Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
(480 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 34 0.19
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 34 0.19
Z54237-3|CAA90989.1| 296|Caenorhabditis elegans Hypothetical pr... 32 1.0
Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical p... 31 1.8
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 31 1.8
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 31 1.8
Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical pr... 29 5.5
AF016443-12|AAC24279.2| 340|Caenorhabditis elegans Seven tm rec... 29 7.2
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 9.6
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 34.3 bits (75), Expect = 0.19
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 245 PNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHR 304
PN P GPPG G P G G G + +++ D P P
Sbjct: 86 PNNCPAGPAGPPGAPGAPGEDGTPGQAGKNGGNG-IGIVNSADAGGCIKCPAGEPGPAGP 144
Query: 305 TIPLGGPGAD 314
P G PGAD
Sbjct: 145 DGPAGAPGAD 154
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 34.3 bits (75), Expect = 0.19
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 245 PNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHR 304
PN P GPPG G P G G G + +++ D P P
Sbjct: 86 PNNCPAGPAGPPGAPGAPGEDGTPGQAGKNGGNG-IGIVNSADAGGCIKCPAGEPGPAGP 144
Query: 305 TIPLGGPGAD 314
P G PGAD
Sbjct: 145 DGPAGAPGAD 154
>Z54237-3|CAA90989.1| 296|Caenorhabditis elegans Hypothetical
protein T11B7.3 protein.
Length = 296
Score = 31.9 bits (69), Expect = 1.0
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 252 PLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPF--HRTIPLG 309
P GPPG G ++ G G G S + H +P L PG P + G
Sbjct: 142 PRGPPGPPGDVGSVGQRGPDGASGAPGAASQI--HGKPGLPGPPGDAGAPGAPGQDGAPG 199
Query: 310 GPGADVRRSFHRAPPPRP 327
PGAD +R + PP P
Sbjct: 200 HPGADGQRQRGQPGPPGP 217
>Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 229 YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264
+ +P + HT + HHP+GPP G P +
Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 229 YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264
+ +P + HT + HHP+GPP G P +
Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 229 YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264
+ +P + HT + HHP+GPP G P +
Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250
>Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical
protein T24A11.3 protein.
Length = 414
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 26 PGPNSCNLCICDNGL-PKDCKVVLCSP 51
P PN+CN+C C GL DC + SP
Sbjct: 281 PDPNNCNVCRCPEGLGGPDCGRLQPSP 307
>AF016443-12|AAC24279.2| 340|Caenorhabditis elegans Seven tm
receptor protein 229 protein.
Length = 340
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 123 LTSIGIFERYISGSMGYMGGTCETALGAWKP 153
LT I FE++ S M + G T TA+ W P
Sbjct: 164 LTKIRKFEKFKSDDMSFYGFTLYTAIDNWSP 194
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 9.6
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 216 PRPVQQLVNPQNCYNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTIN 275
P+ V + P+LQ Q + P GP G G+P A GS G
Sbjct: 103 PQQVNSYARVNSYATAPVLQHPTQQQCNCAPQANNCPPGPQGPTGYPGAPGEPGSRGLDG 162
Query: 276 N---RGLLSVLHDHDRPNLYPNPGSLHTPFHRTIPLGGPG 312
G+ + +D + P P P P G G
Sbjct: 163 RPGANGVTLIAYDQEIPGCIQCPQGPQGPPGAVGPCGPSG 202
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.138 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,142
Number of Sequences: 27539
Number of extensions: 513497
Number of successful extensions: 1464
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 12
length of query: 480
length of database: 12,573,161
effective HSP length: 84
effective length of query: 396
effective length of database: 10,259,885
effective search space: 4062914460
effective search space used: 4062914460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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