SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
         (480 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    34   0.19 
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    34   0.19 
Z54237-3|CAA90989.1|  296|Caenorhabditis elegans Hypothetical pr...    32   1.0  
Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical p...    31   1.8  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    31   1.8  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    31   1.8  
Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm rec...    29   7.2  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    29   9.6  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 245 PNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHR 304
           PN     P GPPG  G P      G  G     G + +++  D       P     P   
Sbjct: 86  PNNCPAGPAGPPGAPGAPGEDGTPGQAGKNGGNG-IGIVNSADAGGCIKCPAGEPGPAGP 144

Query: 305 TIPLGGPGAD 314
             P G PGAD
Sbjct: 145 DGPAGAPGAD 154


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 245 PNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHR 304
           PN     P GPPG  G P      G  G     G + +++  D       P     P   
Sbjct: 86  PNNCPAGPAGPPGAPGAPGEDGTPGQAGKNGGNG-IGIVNSADAGGCIKCPAGEPGPAGP 144

Query: 305 TIPLGGPGAD 314
             P G PGAD
Sbjct: 145 DGPAGAPGAD 154


>Z54237-3|CAA90989.1|  296|Caenorhabditis elegans Hypothetical
           protein T11B7.3 protein.
          Length = 296

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 252 PLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPF--HRTIPLG 309
           P GPPG  G   ++   G  G     G  S +  H +P L   PG    P    +    G
Sbjct: 142 PRGPPGPPGDVGSVGQRGPDGASGAPGAASQI--HGKPGLPGPPGDAGAPGAPGQDGAPG 199

Query: 310 GPGADVRRSFHRAPPPRP 327
            PGAD +R   +  PP P
Sbjct: 200 HPGADGQRQRGQPGPPGP 217


>Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 229  YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264
            + +P +   HT        + HHP+GPP   G P +
Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 229  YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264
            + +P +   HT        + HHP+GPP   G P +
Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 229  YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264
            + +P +   HT        + HHP+GPP   G P +
Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250


>Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical
           protein T24A11.3 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 26  PGPNSCNLCICDNGL-PKDCKVVLCSP 51
           P PN+CN+C C  GL   DC  +  SP
Sbjct: 281 PDPNNCNVCRCPEGLGGPDCGRLQPSP 307


>AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 229 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 123 LTSIGIFERYISGSMGYMGGTCETALGAWKP 153
           LT I  FE++ S  M + G T  TA+  W P
Sbjct: 164 LTKIRKFEKFKSDDMSFYGFTLYTAIDNWSP 194


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 216 PRPVQQLVNPQNCYNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTIN 275
           P+ V       +    P+LQ           Q  + P GP G  G+P A    GS G   
Sbjct: 103 PQQVNSYARVNSYATAPVLQHPTQQQCNCAPQANNCPPGPQGPTGYPGAPGEPGSRGLDG 162

Query: 276 N---RGLLSVLHDHDRPNLYPNPGSLHTPFHRTIPLGGPG 312
                G+  + +D + P     P     P     P G  G
Sbjct: 163 RPGANGVTLIAYDQEIPGCIQCPQGPQGPPGAVGPCGPSG 202


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,142
Number of Sequences: 27539
Number of extensions: 513497
Number of successful extensions: 1464
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 12
length of query: 480
length of database: 12,573,161
effective HSP length: 84
effective length of query: 396
effective length of database: 10,259,885
effective search space: 4062914460
effective search space used: 4062914460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)

- SilkBase 1999-2023 -