BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined (480 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 34 0.19 AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 34 0.19 Z54237-3|CAA90989.1| 296|Caenorhabditis elegans Hypothetical pr... 32 1.0 Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical p... 31 1.8 Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 31 1.8 AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 31 1.8 Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical pr... 29 5.5 AF016443-12|AAC24279.2| 340|Caenorhabditis elegans Seven tm rec... 29 7.2 AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 9.6 >AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein 107, isoform a protein. Length = 256 Score = 34.3 bits (75), Expect = 0.19 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 1/70 (1%) Query: 245 PNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHR 304 PN P GPPG G P G G G + +++ D P P Sbjct: 86 PNNCPAGPAGPPGAPGAPGEDGTPGQAGKNGGNG-IGIVNSADAGGCIKCPAGEPGPAGP 144 Query: 305 TIPLGGPGAD 314 P G PGAD Sbjct: 145 DGPAGAPGAD 154 >AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein 107, isoform b protein. Length = 294 Score = 34.3 bits (75), Expect = 0.19 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 1/70 (1%) Query: 245 PNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPFHR 304 PN P GPPG G P G G G + +++ D P P Sbjct: 86 PNNCPAGPAGPPGAPGAPGEDGTPGQAGKNGGNG-IGIVNSADAGGCIKCPAGEPGPAGP 144 Query: 305 TIPLGGPGAD 314 P G PGAD Sbjct: 145 DGPAGAPGAD 154 >Z54237-3|CAA90989.1| 296|Caenorhabditis elegans Hypothetical protein T11B7.3 protein. Length = 296 Score = 31.9 bits (69), Expect = 1.0 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 252 PLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTPF--HRTIPLG 309 P GPPG G ++ G G G S + H +P L PG P + G Sbjct: 142 PRGPPGPPGDVGSVGQRGPDGASGAPGAASQI--HGKPGLPGPPGDAGAPGAPGQDGAPG 199 Query: 310 GPGADVRRSFHRAPPPRP 327 PGAD +R + PP P Sbjct: 200 HPGADGQRQRGQPGPPGP 217 >Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein K08F8.6 protein. Length = 2862 Score = 31.1 bits (67), Expect = 1.8 Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 229 YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264 + +P + HT + HHP+GPP G P + Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250 >Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical protein K08F8.6 protein. Length = 2862 Score = 31.1 bits (67), Expect = 1.8 Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 229 YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264 + +P + HT + HHP+GPP G P + Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250 >AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex subunit Med13 protein. Length = 2862 Score = 31.1 bits (67), Expect = 1.8 Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 229 YNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSA 264 + +P + HT + HHP+GPP G P + Sbjct: 1215 FQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGS 1250 >Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical protein T24A11.3 protein. Length = 414 Score = 29.5 bits (63), Expect = 5.5 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Query: 26 PGPNSCNLCICDNGL-PKDCKVVLCSP 51 P PN+CN+C C GL DC + SP Sbjct: 281 PDPNNCNVCRCPEGLGGPDCGRLQPSP 307 >AF016443-12|AAC24279.2| 340|Caenorhabditis elegans Seven tm receptor protein 229 protein. Length = 340 Score = 29.1 bits (62), Expect = 7.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 123 LTSIGIFERYISGSMGYMGGTCETALGAWKP 153 LT I FE++ S M + G T TA+ W P Sbjct: 164 LTKIRKFEKFKSDDMSFYGFTLYTAIDNWSP 194 >AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein 69 protein. Length = 394 Score = 28.7 bits (61), Expect = 9.6 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 3/100 (3%) Query: 216 PRPVQQLVNPQNCYNTPLLQAVHTTDARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTIN 275 P+ V + P+LQ Q + P GP G G+P A GS G Sbjct: 103 PQQVNSYARVNSYATAPVLQHPTQQQCNCAPQANNCPPGPQGPTGYPGAPGEPGSRGLDG 162 Query: 276 N---RGLLSVLHDHDRPNLYPNPGSLHTPFHRTIPLGGPG 312 G+ + +D + P P P P G G Sbjct: 163 RPGANGVTLIAYDQEIPGCIQCPQGPQGPPGAVGPCGPSG 202 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.320 0.138 0.446 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,433,142 Number of Sequences: 27539 Number of extensions: 513497 Number of successful extensions: 1464 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1453 Number of HSP's gapped (non-prelim): 12 length of query: 480 length of database: 12,573,161 effective HSP length: 84 effective length of query: 396 effective length of database: 10,259,885 effective search space: 4062914460 effective search space used: 4062914460 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 61 (28.7 bits)
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