GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
         (480 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   7.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   9.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   9.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 21  GIHYVPGPNSCNLC--ICDNGLPKDCKVVLCSPPQDCRSFRVGNNCCEF 67
           G HY  G +SC  C       + +  +   C+  Q C   R+  N C++
Sbjct: 76  GFHY--GVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQY 122


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 284 HDHDRPNLYPNPGSLHTPFHRTIPLGGPGADVRRSFHRAPPPRPHTGRSVP 334
           H++   N+Y  PG    P H T+  G          H +    PH   S P
Sbjct: 401 HNNLLNNVYSTPG----PHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTP 447


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 36 CDNGLPKDCKVVLCSPPQDCR 56
          C N +PK   + +C+P   CR
Sbjct: 54 CPNVVPKPLCIKICAPGCVCR 74


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 36 CDNGLPKDCKVVLCSPPQDCR 56
          C N +PK   + +C+P   CR
Sbjct: 54 CPNVVPKPLCIKICAPGCVCR 74


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,855
Number of Sequences: 429
Number of extensions: 6469
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 480
length of database: 140,377
effective HSP length: 60
effective length of query: 420
effective length of database: 114,637
effective search space: 48147540
effective search space used: 48147540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)