GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             36   0.078
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    34   0.24 
At1g32810.1 68414.m04044 expressed protein                             31   2.2  
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family...    31   2.2  
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family...    31   2.2  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    29   9.0  
At3g24900.1 68416.m03122 disease resistance family protein / LRR...    29   9.0  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 35.5 bits (78), Expect = 0.078
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 8   GDCSDLRGRVI----SHGIHYVPGPNSCN---------LCICDNGLPK-DCKVVLCSPPQ 53
           GDC D + R +     H       PN+CN         +CIC+NG    DC   +C    
Sbjct: 611 GDCVDGKCRCLLGYHGHDCRNRSCPNNCNGHGKCTTQGVCICENGFTGIDCSTAICDEQC 670

Query: 54  DCRSFRVGNNCCEFICLD 71
                   N  CEF C D
Sbjct: 671 SLHGGVCDNGVCEFRCSD 688


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 33.9 bits (74), Expect = 0.24
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 206 QCVGHGYANIPRPVQQLVNPQNCYNTPLLQAVHTTDARDPN----QIQHHPLGPPGGVGF 261
           QCVG G       V  +  P   Y   LLQ++H +  R       Q+QH PLGPP  +  
Sbjct: 56  QCVGRGGT-----VLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQ 110

Query: 262 PSAIRLTGS 270
           P+    +G+
Sbjct: 111 PNVSIASGT 119


>At1g32810.1 68414.m04044 expressed protein
          Length = 654

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 281 SVLHDHDRPNLYPNPGSLHTPFHRTIP 307
           S L++H++P+ + +P +  TP HRT+P
Sbjct: 441 SELNEHNKPSPHSSPRNNGTPVHRTLP 467


>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 242 ARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTP 301
           +R PNQ   HP GPP    +P  I  TG L T ++R     +     P   P    +  P
Sbjct: 463 SRSPNQHIRHPTGPP--KHYPVVIPSTGVLPTPSHRPPNGAVQPIFIPPSPPLASPM--P 518

Query: 302 FHRTIPLGGPGADVRRSFHR---APPPR---PHTGRSVP 334
           F   +P G P   +     R   AP PR   P TG  +P
Sbjct: 519 FPGGVPTGPPVWPLLPPHPRHQTAPQPRMPIPGTGVFLP 557


>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 242 ARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTP 301
           +R PNQ   HP GPP    +P  I  TG L T ++R     +     P   P    +  P
Sbjct: 463 SRSPNQHIRHPTGPP--KHYPVVIPSTGVLPTPSHRPPNGAVQPIFIPPSPPLASPM--P 518

Query: 302 FHRTIPLGGPGADVRRSFHR---APPPR---PHTGRSVP 334
           F   +P G P   +     R   AP PR   P TG  +P
Sbjct: 519 FPGGVPTGPPVWPLLPPHPRHQTAPQPRMPIPGTGVFLP 557


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 161 GEAPPPYDEAVAQCRQEVMRIQSEAAFHRTYPATVESLTRPDEAMQCVGHGYA 213
           G  PPP  E + +  ++++ IQ+E+      P   E + RP     CVGH  A
Sbjct: 533 GPRPPPNREFILKPTKKMLHIQAESTPGSPCPRCPEPVWRP-----CVGHHLA 580


>At3g24900.1 68416.m03122 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 884

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 268 TGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHT-PFHRTIPLGG 310
           TGSL  + N   LS+LH  D       P SL T PF   + LGG
Sbjct: 259 TGSLPLVQNLTKLSILHLSDNHFSGTIPSSLFTMPFLSYLDLGG 302


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,746
Number of Sequences: 28952
Number of extensions: 469436
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 8
length of query: 480
length of database: 12,070,560
effective HSP length: 84
effective length of query: 396
effective length of database: 9,638,592
effective search space: 3816882432
effective search space used: 3816882432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)