BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001479-TA|BGIBMGA001479-PA|undefined (480 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g42620.1 68418.m05188 expressed protein 36 0.078 At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 34 0.24 At1g32810.1 68414.m04044 expressed protein 31 2.2 At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family... 31 2.2 At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family... 31 2.2 At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 9.0 At3g24900.1 68416.m03122 disease resistance family protein / LRR... 29 9.0 >At5g42620.1 68418.m05188 expressed protein Length = 841 Score = 35.5 bits (78), Expect = 0.078 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 14/78 (17%) Query: 8 GDCSDLRGRVI----SHGIHYVPGPNSCN---------LCICDNGLPK-DCKVVLCSPPQ 53 GDC D + R + H PN+CN +CIC+NG DC +C Sbjct: 611 GDCVDGKCRCLLGYHGHDCRNRSCPNNCNGHGKCTTQGVCICENGFTGIDCSTAICDEQC 670 Query: 54 DCRSFRVGNNCCEFICLD 71 N CEF C D Sbjct: 671 SLHGGVCDNGVCEFRCSD 688 >At3g19670.1 68416.m02492 FF domain-containing protein / WW domain-containing protein weak similarity to huntingtin-interacting protein HYPA/FBP11 [Homo sapiens] GI:3341980; contains Pfam profiles PF01846: FF domain, PF00397: WW domain Length = 960 Score = 33.9 bits (74), Expect = 0.24 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%) Query: 206 QCVGHGYANIPRPVQQLVNPQNCYNTPLLQAVHTTDARDPN----QIQHHPLGPPGGVGF 261 QCVG G V + P Y LLQ++H + R Q+QH PLGPP + Sbjct: 56 QCVGRGGT-----VLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQ 110 Query: 262 PSAIRLTGS 270 P+ +G+ Sbjct: 111 PNVSIASGT 119 >At1g32810.1 68414.m04044 expressed protein Length = 654 Score = 30.7 bits (66), Expect = 2.2 Identities = 11/27 (40%), Positives = 20/27 (74%) Query: 281 SVLHDHDRPNLYPNPGSLHTPFHRTIP 307 S L++H++P+ + +P + TP HRT+P Sbjct: 441 SELNEHNKPSPHSSPRNNGTPVHRTLP 467 >At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 601 Score = 30.7 bits (66), Expect = 2.2 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 242 ARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTP 301 +R PNQ HP GPP +P I TG L T ++R + P P + P Sbjct: 463 SRSPNQHIRHPTGPP--KHYPVVIPSTGVLPTPSHRPPNGAVQPIFIPPSPPLASPM--P 518 Query: 302 FHRTIPLGGPGADVRRSFHR---APPPR---PHTGRSVP 334 F +P G P + R AP PR P TG +P Sbjct: 519 FPGGVPTGPPVWPLLPPHPRHQTAPQPRMPIPGTGVFLP 557 >At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 601 Score = 30.7 bits (66), Expect = 2.2 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 242 ARDPNQIQHHPLGPPGGVGFPSAIRLTGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHTP 301 +R PNQ HP GPP +P I TG L T ++R + P P + P Sbjct: 463 SRSPNQHIRHPTGPP--KHYPVVIPSTGVLPTPSHRPPNGAVQPIFIPPSPPLASPM--P 518 Query: 302 FHRTIPLGGPGADVRRSFHR---APPPR---PHTGRSVP 334 F +P G P + R AP PR P TG +P Sbjct: 519 FPGGVPTGPPVWPLLPPHPRHQTAPQPRMPIPGTGVFLP 557 >At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein contains PF01422: NF-X1 type zinc finger Length = 912 Score = 28.7 bits (61), Expect = 9.0 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 161 GEAPPPYDEAVAQCRQEVMRIQSEAAFHRTYPATVESLTRPDEAMQCVGHGYA 213 G PPP E + + ++++ IQ+E+ P E + RP CVGH A Sbjct: 533 GPRPPPNREFILKPTKKMLHIQAESTPGSPCPRCPEPVWRP-----CVGHHLA 580 >At3g24900.1 68416.m03122 disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780 Length = 884 Score = 28.7 bits (61), Expect = 9.0 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 268 TGSLGTINNRGLLSVLHDHDRPNLYPNPGSLHT-PFHRTIPLGG 310 TGSL + N LS+LH D P SL T PF + LGG Sbjct: 259 TGSLPLVQNLTKLSILHLSDNHFSGTIPSSLFTMPFLSYLDLGG 302 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.320 0.138 0.446 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,851,746 Number of Sequences: 28952 Number of extensions: 469436 Number of successful extensions: 840 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 838 Number of HSP's gapped (non-prelim): 8 length of query: 480 length of database: 12,070,560 effective HSP length: 84 effective length of query: 396 effective length of database: 9,638,592 effective search space: 3816882432 effective search space used: 3816882432 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 61 (28.7 bits)
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