Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001478-TA|BGIBMGA001478-PA|undefined
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 38 0.007
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 29 2.6
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 28 4.6
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 28 4.6
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 28 4.6
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 4.6
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 8.0
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 27 8.0
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 37.5 bits (83), Expect = 0.007
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 599 INHKRSRE-W---HSKKNTESNESXXXXXXXXXXXTSQVRELERSGQSAAPALLVLDTAA 654
IN +R+R W H +E N S +S + + S L VLDT
Sbjct: 16 INSERARNRWSTSHIPSLSEINPSSFQSPSPSPFASSTSLASKPARYSKPLGLFVLDTNF 75
Query: 655 LNKHLRRVKQLL--LTTN---FVLMVPTVVLQELDNLKREQST-----ARKAIRWLELQL 704
L HL + L+ LT V+++P VLQELD LK E S+ AR+A +L
Sbjct: 76 LLSHLSLCQNLIEFLTARCPRLVVVLPWTVLQELDGLKSESSSTCGYLARQAHNFLLQCF 135
Query: 705 KNGSRFLRAQRPNQ 718
++ LR Q+ ++
Sbjct: 136 RSNVSSLRGQKVHE 149
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 15 ERNERAKKLYRYLSDVARRINDMSTTSKFVSDLFTTNI-EVQR 56
E N RA++ R + DV R+N +T KF D ++ E+++
Sbjct: 197 EANVRAEQQERLVEDVLARVNSKVSTQKFQQDALNESLGEIEK 239
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 567 NQIAKIIPRIRFNRTMKLFY------LKNIHPPKLNTKINHKRSREWHSKKNTESNES 618
+QI +I P+I+ ++F L+ +HP + ++ K S E+H K+ + N S
Sbjct: 294 SQIKQICPKIKQPNAFQIFLKENSKRLRKLHPHITHKELMKKLSDEYHRTKDAKQNVS 351
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 4.6
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 638 RSGQSAAPALLVLDTAALNKHLRRVKQLLLT-TNFVLMVPTVVL--QELDNLKREQSTAR 694
R + A L LD + ++ + +++ T + F V V N+ + T
Sbjct: 477 RKSKERADLLAKLDNSLTHEQIEGWRRMFTTDSKFAEAVKKEVTFGSGNTNIGSLRQTKF 536
Query: 695 KAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINN 737
K + +L +GSR R RP+++ L KY R P +N
Sbjct: 537 KQSNYTPPELNDGSRQHRPSRPSKNPSLKKKKYVRTKPKKASN 579
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 9 SEAKIAERNERAKKLYRYLSDVARRINDMSTTSK 42
SE K E NE+ K L Y+ V + ND+ +K
Sbjct: 855 SEVKYNELNEQVKTLEGYVETVLEKFNDLKIENK 888
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 13 IAERNERAKKLYRYLSDVARRINDMSTTSKFVSDLF 48
+ + ++ L+ L++ R+ND+S+TS+F S+ F
Sbjct: 274 VESQRQKMDSLHFALTNALERLNDISSTSQFPSERF 309
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 153 KIAQQLKICMEFNEATLPDIDKNYDDYLSILEHETNFPSYLNPNL 197
K+ QQ+ + + NE L + + D LS E +F L P++
Sbjct: 341 KLFQQMNLAKQSNETLLQTLTEQTDQLLSFKETMDSFKFILGPSM 385
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 8.0
Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 633 VRELERSGQSAA-----PALLVLDTAALNKHLRRVKQLLLTTNFVLMVPTVVLQ--ELDN 685
VR L+++ +S P LLV++ N + LLTT F M P + +Q +++
Sbjct: 120 VRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINS 179
Query: 686 LKREQSTARKAIRWLELQLKNGSRFLRAQRP-NQSKPLPLLKYPRKAPAHINNFIQILEF 744
+KR R+ +++L+ F+ + +P S+P+ L K + I + + +
Sbjct: 180 VKRVLLLNRRDDGYIDLR-----HFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDI 234
Query: 745 CNHFVAEDKKTQGSGDAE 762
++ + D + + D+E
Sbjct: 235 SDYVLHGDGISGAASDSE 252
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,994
Number of Sequences: 5004
Number of extensions: 133195
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 8
length of query: 824
length of database: 2,362,478
effective HSP length: 79
effective length of query: 745
effective length of database: 1,967,162
effective search space: 1465535690
effective search space used: 1465535690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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