GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001478-TA|BGIBMGA001478-PA|undefined
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    38   0.007
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    29   2.6  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    28   4.6  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   4.6  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   4.6  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        28   4.6  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   8.0  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    27   8.0  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 14/134 (10%)

Query: 599 INHKRSRE-W---HSKKNTESNESXXXXXXXXXXXTSQVRELERSGQSAAPALLVLDTAA 654
           IN +R+R  W   H    +E N S           +S     + +  S    L VLDT  
Sbjct: 16  INSERARNRWSTSHIPSLSEINPSSFQSPSPSPFASSTSLASKPARYSKPLGLFVLDTNF 75

Query: 655 LNKHLRRVKQLL--LTTN---FVLMVPTVVLQELDNLKREQST-----ARKAIRWLELQL 704
           L  HL   + L+  LT      V+++P  VLQELD LK E S+     AR+A  +L    
Sbjct: 76  LLSHLSLCQNLIEFLTARCPRLVVVLPWTVLQELDGLKSESSSTCGYLARQAHNFLLQCF 135

Query: 705 KNGSRFLRAQRPNQ 718
           ++    LR Q+ ++
Sbjct: 136 RSNVSSLRGQKVHE 149


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 15  ERNERAKKLYRYLSDVARRINDMSTTSKFVSDLFTTNI-EVQR 56
           E N RA++  R + DV  R+N   +T KF  D    ++ E+++
Sbjct: 197 EANVRAEQQERLVEDVLARVNSKVSTQKFQQDALNESLGEIEK 239


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 567 NQIAKIIPRIRFNRTMKLFY------LKNIHPPKLNTKINHKRSREWHSKKNTESNES 618
           +QI +I P+I+     ++F       L+ +HP   + ++  K S E+H  K+ + N S
Sbjct: 294 SQIKQICPKIKQPNAFQIFLKENSKRLRKLHPHITHKELMKKLSDEYHRTKDAKQNVS 351


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 638 RSGQSAAPALLVLDTAALNKHLRRVKQLLLT-TNFVLMVPTVVL--QELDNLKREQSTAR 694
           R  +  A  L  LD +  ++ +   +++  T + F   V   V       N+   + T  
Sbjct: 477 RKSKERADLLAKLDNSLTHEQIEGWRRMFTTDSKFAEAVKKEVTFGSGNTNIGSLRQTKF 536

Query: 695 KAIRWLELQLKNGSRFLRAQRPNQSKPLPLLKYPRKAPAHINN 737
           K   +   +L +GSR  R  RP+++  L   KY R  P   +N
Sbjct: 537 KQSNYTPPELNDGSRQHRPSRPSKNPSLKKKKYVRTKPKKASN 579


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 9   SEAKIAERNERAKKLYRYLSDVARRINDMSTTSK 42
           SE K  E NE+ K L  Y+  V  + ND+   +K
Sbjct: 855 SEVKYNELNEQVKTLEGYVETVLEKFNDLKIENK 888


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/36 (30%), Positives = 23/36 (63%)

Query: 13  IAERNERAKKLYRYLSDVARRINDMSTTSKFVSDLF 48
           +  + ++   L+  L++   R+ND+S+TS+F S+ F
Sbjct: 274 VESQRQKMDSLHFALTNALERLNDISSTSQFPSERF 309


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 153 KIAQQLKICMEFNEATLPDIDKNYDDYLSILEHETNFPSYLNPNL 197
           K+ QQ+ +  + NE  L  + +  D  LS  E   +F   L P++
Sbjct: 341 KLFQQMNLAKQSNETLLQTLTEQTDQLLSFKETMDSFKFILGPSM 385


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 13/138 (9%)

Query: 633 VRELERSGQSAA-----PALLVLDTAALNKHLRRVKQLLLTTNFVLMVPTVVLQ--ELDN 685
           VR L+++ +S       P LLV++    N       + LLTT F  M P + +Q   +++
Sbjct: 120 VRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINS 179

Query: 686 LKREQSTARKAIRWLELQLKNGSRFLRAQRP-NQSKPLPLLKYPRKAPAHINNFIQILEF 744
           +KR     R+   +++L+      F+ + +P   S+P+  L    K  + I +   + + 
Sbjct: 180 VKRVLLLNRRDDGYIDLR-----HFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDI 234

Query: 745 CNHFVAEDKKTQGSGDAE 762
            ++ +  D  +  + D+E
Sbjct: 235 SDYVLHGDGISGAASDSE 252


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,994
Number of Sequences: 5004
Number of extensions: 133195
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 8
length of query: 824
length of database: 2,362,478
effective HSP length: 79
effective length of query: 745
effective length of database: 1,967,162
effective search space: 1465535690
effective search space used: 1465535690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)