GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001478-TA|BGIBMGA001478-PA|undefined
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    31   4.9  
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    30   8.6  

>07_03_0918 -
           22581625-22581687,22581773-22581868,22581980-22582268,
           22582341-22582477,22582567-22582683,22583277-22583440,
           22583542-22583756,22583838-22584004,22584206-22584559,
           22584647-22584795,22584907-22585030,22585132-22585371,
           22585723-22586140,22586297-22586920,22586999-22587183,
           22587302-22587412,22587583-22587789,22587869-22587967,
           22588063-22588159,22588296-22588384,22588495-22588548,
           22588671-22588793,22588872-22588940,22589020-22589089,
           22589202-22589260,22589367-22589570,22590032-22590060,
           22590375-22590433,22590513-22590634,22591637-22591830,
           22591974-22592088
          Length = 1680

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 122 EHIQNTIVNFLSLIEIWYLNKSDSDIPQRCSKIAQQLKICMEFNEATLPDIDKNYD 177
           E ++  I  F  LI +  L+ SDS + QR S +    K+C +     L D+  NYD
Sbjct: 363 ESLKGEIGVFFPLIVLRSLDSSDSPLSQRASVLRMLEKVCKD--SQMLADMFVNYD 416


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 762 ENVLQGKSSSVLILLVGNADEDEEQYKEFSVMGAAQSAGISVENIVDFY 810
           E+VLQG  SS+  +  G      E ++ F + G   S  + V +I+ FY
Sbjct: 215 ESVLQGHESSIGFVTSGEIQRRAEFFEPF-ISGLTNSTVVQVSSILPFY 262


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,807,016
Number of Sequences: 37544
Number of extensions: 699924
Number of successful extensions: 1585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 2
length of query: 824
length of database: 14,793,348
effective HSP length: 88
effective length of query: 736
effective length of database: 11,489,476
effective search space: 8456254336
effective search space used: 8456254336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)