GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001478-TA|BGIBMGA001478-PA|undefined
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)                    70   9e-12
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.70 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.0  
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         31   5.0  
SB_41113| Best HMM Match : VWA (HMM E-Value=1.8e-21)                   30   8.7  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     30   8.7  

>SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)
          Length = 884

 Score = 69.7 bits (163), Expect = 9e-12
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 17  NERAKKLYRYLSDVARRINDMSTTSKFVSDLFTTNIEVQRQKLRDNCEKLLFLDPINYGK 76
           N    +LYR    +++R++ +  ++    ++F     + RQ+LR NCE L+F  P  YG+
Sbjct: 20  NTSVTRLYRSSIQLSQRLDLILKSATNWEEIFQAETIIIRQRLRSNCESLIFNHPKEYGR 79

Query: 77  KALELLWRKVYYDTISTAKKLRTDSEHDHFL 107
           KA ELLWRKV+YD I   ++ R  S +D  L
Sbjct: 80  KAEELLWRKVFYDVIQWLRQHRKVSPNDEHL 110



 Score = 33.1 bits (72), Expect = 0.93
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 444 MASIKLLLDWILIEKDLILSCGDSGESLFQCVVDLLNI 481
           + ++K++ DW+    D+I +C +S  SL+  +  LLN+
Sbjct: 640 LPAVKVMADWLRTNPDIISTCVESSTSLWSKMASLLNL 677


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 33.5 bits (73), Expect = 0.70
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 659  LRRVKQLLLTTNFVLMVPTVVLQEL-DNLKREQSTARKAI-RWL--ELQLKNGSRFLRAQ 714
            + RV +LL   +  L VP   LQ + D+L  +Q TA K   +W   E+Q +    +LR++
Sbjct: 3228 ITRVIELLQQRSRDLDVPLYDLQTMWDSLMHDQVTASKTHDKWEPPEIQYEGPVTYLRSE 3287

Query: 715  RPNQSKPLPLLKYPRKAPAHI 735
             P  S  LP  K   KA A +
Sbjct: 3288 NPKFSPTLPQYKTSDKAWAEV 3308


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 140 LNKSDSDIPQRCSKIAQQLKICMEFNEATLPDIDKNYDDYLSILEHE 186
           LNK+  D+ Q  S+  +QLK   E  E+ +  +  +YD+ L   E E
Sbjct: 512 LNKTIEDLTQEVSQKDKQLKALEESKESDIRTLSSDYDNRLKDKERE 558


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 577 RFNRTMKLFYLKNIHP----PKLNTKINHKRSREWHS 609
           R  R M+L  LK  HP     K NTK+N K+  +WH+
Sbjct: 915 RRGRNMELIKLKIKHPIKGVDKGNTKLNGKKPHDWHT 951


>SB_41113| Best HMM Match : VWA (HMM E-Value=1.8e-21)
          Length = 240

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 8  LSEAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVSDL---FTTNIEVQRQKLRDNCE 64
          ++E    +  E AK++   LS + R I         V+D+   FTT  +  +  LR+N +
Sbjct: 18 VTEQMFKQEKEFAKRIAEALSGLPREIRLSVAPYSNVADISIPFTTFTQESKNVLRENID 77

Query: 65 KLLFL 69
          K+ FL
Sbjct: 78 KITFL 82


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 684  DNLKREQSTARKAIRWLELQLKN-GSRFL 711
            DNL R + TAR+ I WLE+++ N G  FL
Sbjct: 1310 DNLSRTRYTARQMIFWLEMRVLNIGIMFL 1338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,708,055
Number of Sequences: 59808
Number of extensions: 865499
Number of successful extensions: 2001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 10
length of query: 824
length of database: 16,821,457
effective HSP length: 88
effective length of query: 736
effective length of database: 11,558,353
effective search space: 8506947808
effective search space used: 8506947808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)