GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001478-TA|BGIBMGA001478-PA|undefined
         (824 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    34   0.36 
AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical...    31   2.5  
Z78200-4|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    31   4.4  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    31   4.4  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    30   7.7  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    30   7.7  

>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 213 protein.
          Length = 1437

 Score = 34.3 bits (75), Expect = 0.36
 Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 17/223 (7%)

Query: 11   AKIAERNERAKKLYRYLSDVARRINDMSTTSKFVSDLFTTNIEVQRQKLRDNCEKLLFLD 70
            ++I++  + AKK+ +   +  ++   + T  K  +++FT+ +E Q + L D  +      
Sbjct: 805  SRISDHYDAAKKISKAAVEDGQKTR-LDTQQK--TEMFTSALESQVEMLMDELKASEPGM 861

Query: 71   PINYGKKALELLWRKVYYDT-ISTAKKLRT-------DSEHDHFLFTLIQCGIDTLTQVE 122
              N   K   + W    YD  + TA   RT         E  H         +++  + E
Sbjct: 862  EENIPVKFFAVFWMLTMYDIEVPTAAYERTLDALKKQSREDSHGKAKKTDKQLESKLREE 921

Query: 123  HIQNTIVNFLSLIEIWYLNKSDSDIPQRC--SKIAQQLKICMEFNEATLPDIDKNYDDYL 180
              Q   +  +   ++W LNK DS I ++   S +   ++ C+    A   ++D  +    
Sbjct: 922  --QKRQIEHVERCKVWLLNKKDSLIDEQFHNSVLEALIQQCL-LPRAIFSELDAVFCGQF 978

Query: 181  SILEHETNFPSYLNPNLIHRMVLICLFTVSKMTEIDETKAFAC 223
             ++ HE   P + +  +I R+    +  ++ +TE +E  + AC
Sbjct: 979  FMMLHEMRTPFFPSVLIIDRLFENIIPLIAGLTE-NEANSLAC 1020


>AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical
           protein C54F6.3 protein.
          Length = 314

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 500 LIKYIRNLVMKMKLEYKTIPLPEDINLRGTNI---CKFDKDAAEWHIL 544
           ++K I N + K++   +  P+P  ++     +   C FDKD A+WH+L
Sbjct: 166 VVKEIYNGLKKVQNHKEWQPIPTYMDTHAAPLSWNCNFDKDLAKWHLL 213


>Z78200-4|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4 protein.
          Length = 1298

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 10   EAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVSDLFTTNIEVQRQKLRDNCEKLLFL 69
            + KIAE     K+     S+    I +++ T + +SDL      +    ++ + EK+  +
Sbjct: 1058 QKKIAEAKLSTKECQNAESNYRDAIIELAITKESISDLTKYRNCLDASLIQFHSEKMGRV 1117

Query: 70   DPINYGKKALELLWRKVYYDTISTAKKLRTDS 101
            + I      ++ LWRKVY  T  T  ++R+D+
Sbjct: 1118 NGI------IDDLWRKVYNSTDITTIRIRSDA 1143


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 10   EAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVSDLFTTNIEVQRQKLRDNCEKLLFL 69
            + KIAE     K+     S+    I +++ T + +SDL      +    ++ + EK+  +
Sbjct: 1058 QKKIAEAKLSTKECQNAESNYRDAIIELAITKESISDLTKYRNCLDASLIQFHSEKMGRV 1117

Query: 70   DPINYGKKALELLWRKVYYDTISTAKKLRTDS 101
            + I      ++ LWRKVY  T  T  ++R+D+
Sbjct: 1118 NGI------IDDLWRKVYNSTDITTIRIRSDA 1143


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 469 ESLFQCVVDLLNIFTFYFNTKSDEGTKEDCELIKYIRNLVMKMKLEYK 516
           +S+F C+V  +  F FY  T        D EL K  RN  ++  ++YK
Sbjct: 244 QSIFSCIVTTV-FFYFYKETPIRHANVSDNELQKIQRNEAVRGNIDYK 290


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 775 LLVGNADEDEEQYKEFSVMGAAQSAGISVENIVDFYS 811
           +L+ ++DEDEE+ + F  M    S G+    +V  YS
Sbjct: 186 ILIADSDEDEEEEEFFDEMPVINSLGVRSPTLVKAYS 222


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,108
Number of Sequences: 27539
Number of extensions: 697675
Number of successful extensions: 1906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1904
Number of HSP's gapped (non-prelim): 7
length of query: 824
length of database: 12,573,161
effective HSP length: 87
effective length of query: 737
effective length of database: 10,177,268
effective search space: 7500646516
effective search space used: 7500646516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)