GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001478-TA|BGIBMGA001478-PA|undefined
         (824 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      29   0.15 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    27   0.82 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   3.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   4.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 19/82 (23%), Positives = 36/82 (43%)

Query: 35  NDMSTTSKFVSDLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALELLWRKVYYDTISTA 94
           N  ST +K       T  E+Q Q++  N  +      +N    AL  +   +  D +S  
Sbjct: 232 NASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKI 291

Query: 95  KKLRTDSEHDHFLFTLIQCGID 116
           + L+  + +  FLF ++ C ++
Sbjct: 292 QTLKLATRYIDFLFQVLHCNME 313


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 565 FGNQIAKIIPRIRFNRTMKLFYLKNIHPPKLNTKINHK------RSREWHSKKNTESNE- 617
           F N I +    +   +    + LK+   PKL  K   K      RSR W S  NT +N+ 
Sbjct: 314 FVNTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSLDNTNTNDQ 373

Query: 618 ---SXXXXXXXXXXXTSQVR--ELERSGQSAAPALLVLDTAALNKHLRRVKQLLLTTNFV 672
              S           T  +   +++   + +  ++  +++ +  K   R   L    NF 
Sbjct: 374 DYSSQNYLTVHSFPSTLNIPSVKIDEDQKCSIESITSVNSTSSPKPFPRRATLAQLHNFT 433

Query: 673 LMVPTVVLQELDNLKR 688
            M P  + Q +D   R
Sbjct: 434 TMTPQEIAQWIDRRSR 449


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 139 YLNKSDSDIPQRCSKIAQQLKICME-FNEAT-----LPDIDKNYDDYLSILEHETNFPSY 192
           Y N+ D   P   S    +LK   + F   T     + + D  +  + S+ + E   P Y
Sbjct: 383 YTNEIDFSFPDSVSDYPLELKGSPDGFESVTSQYKNIREDDARHIPHASVTDSENTVPRY 442

Query: 193 LNPNLI 198
           L+P++I
Sbjct: 443 LSPDVI 448


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/38 (21%), Positives = 23/38 (60%)

Query: 28  SDVARRINDMSTTSKFVSDLFTTNIEVQRQKLRDNCEK 65
           S+ +   N  +++ +   +  TT++E ++++  ++CEK
Sbjct: 748 SEASANANSSTSSEESREEKATTSLEAEKREKSEHCEK 785


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,676
Number of Sequences: 429
Number of extensions: 7752
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 824
length of database: 140,377
effective HSP length: 63
effective length of query: 761
effective length of database: 113,350
effective search space: 86259350
effective search space used: 86259350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)