GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001478-TA|BGIBMGA001478-PA|undefined
         (824 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34355.1 68414.m04265 forkhead-associated domain-containing p...    35   0.25 
At5g18410.2 68418.m02167 expressed protein similar to p53 induci...    31   2.4  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    31   2.4  
At3g09130.1 68416.m01074 hypothetical protein                          31   4.1  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    30   7.2  

>At1g34355.1 68414.m04265 forkhead-associated domain-containing
            protein / FHA domain-containing protein
          Length = 1477

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 10/81 (12%)

Query: 648  LVLDTAAL-NKHLRRVKQLLLTTNFV-LMVPTVVLQELDNLKREQS--------TARKAI 697
            +VLDT++L +K  R+  QLL       L+VP  VL+EL+ +KR +S         A  A+
Sbjct: 1239 IVLDTSSLLDKESRKPLQLLQGLKGTHLVVPRTVLRELNEVKRSRSFLFRRRTEIASSAL 1298

Query: 698  RWLELQLKNGSRFLRAQRPNQ 718
             W+E    N   +++ Q P +
Sbjct: 1299 DWIEECKVNSKWWIQVQSPTE 1319


>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1017

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 631 SQVRELERSGQSAAPALLVLDTAALNKHLRRVKQLLLTTNFVLMVPTVVLQELDNLKREQ 690
           S++RE++R  QS+A A L  D    ++  RR+    +T  + ++    VL +LD+LK  +
Sbjct: 115 SRLREIQR-WQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAK 173

Query: 691 STARKAIRW 699
           ++      W
Sbjct: 174 ASIPNDFSW 182


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 631 SQVRELERSGQSAAPALLVLDTAALNKHLRRVKQLLLTTNFVLMVPTVVLQELDNLKREQ 690
           S++RE++R  QS+A A L  D    ++  RR+    +T  + ++    VL +LD+LK  +
Sbjct: 115 SRLREIQR-WQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAK 173

Query: 691 STARKAIRW 699
           ++      W
Sbjct: 174 ASIPNDFSW 182


>At3g09130.1 68416.m01074 hypothetical protein
          Length = 397

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 147 IPQRCSKIAQQLKICMEFNEATLPDIDKNYDDYLSILEHETNFPSYL 193
           I Q CS+ A+++ IC+ F+ A L +  K      S++   TN  SY+
Sbjct: 327 IAQWCSQNAEKVAICLGFHTALLENAGKFPGPSYSLMVLRTNVDSYI 373


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 84   RKVYYDTISTAKKLRTDSEHDHFLFTLIQCGIDTLTQVE-HIQNTIVNFLSLIEIWYLNK 142
            R   +   +   K   D   DH +  L   G  T+TQ++ H ++    F+S++  ++L+K
Sbjct: 1156 RNHIFSLFTAIVKFVPDKVLDHIISILTLVGESTVTQIDSHSKSIFEGFISMVIPFWLSK 1215

Query: 143  SDSD 146
            + S+
Sbjct: 1216 TKSE 1219


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,317,380
Number of Sequences: 28952
Number of extensions: 635439
Number of successful extensions: 1642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1641
Number of HSP's gapped (non-prelim): 6
length of query: 824
length of database: 12,070,560
effective HSP length: 87
effective length of query: 737
effective length of database: 9,551,736
effective search space: 7039629432
effective search space used: 7039629432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)