Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001477-TA|BGIBMGA001477-PA|undefined
         (597 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    27   0.49 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   7.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   7.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   7.9  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   7.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   7.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   7.9  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
          castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 7  DHSDSDSGESWTLLENSSACGEDAPVILKNFNSERQAVDSNTDKDED 53
          DH+   S ++   + N +   ED P+  KN  S   A+   T+   D
Sbjct: 15 DHNSCSSDDTVLSVGNENPPPEDTPLSFKNIESHLNAISQITNSTLD 61


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 8   HSDSDSGESWTLLENSSACGEDAPVILKNFNSERQAVDSNTDKDEDTD 55
           H DS +  S   L+      EDA    ++   + Q   +N D+D+D +
Sbjct: 156 HQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDDDE 203


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 8   HSDSDSGESWTLLENSSACGEDAPVILKNFNSERQAVDSNTDKDEDTD 55
           H DS +  S   L+      EDA    ++   + Q   +N D+D+D +
Sbjct: 156 HQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDDDE 203


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 460 YDEISLSSQENENFNLKLDQSTDIDKKH--LQPTSSTDKGHDLNAFGEVSDTKVVINELK 517
           YD++  + ++N N  + LD        H    P  S ++ +  +        K+  +   
Sbjct: 4   YDKM-FNQEQNNNVPVVLDVIPPHYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTS 62

Query: 518 SCKYKDKNKTLKELKWYEKRAAFRTEARKKLEHELFGENNANK 560
           S    D+N     ++ Y  R AF  E   +LE E F EN  ++
Sbjct: 63  SVNVNDQN-----IRRY--RTAFTREQLARLEKEFFKENYVSR 98


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 160 ECSTNTIPVSVNKILSNLYKLQEEN 184
           E +TNT   S+++ L+N +K + EN
Sbjct: 337 ESTTNTQSSSLSEFLTNTHKRKIEN 361


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 252 LPEYERDFLNDINKLKNV 269
           LPEYE  F  ++ K K +
Sbjct: 284 LPEYEYSFYQEVKKPKKI 301


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 8   HSDSDSGESWTLLENSSACGEDAPVILKNFNSERQAVDSNTDKDEDTD 55
           H DS +  S   L+      EDA    ++   + Q   +N D+D+D +
Sbjct: 156 HQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDDDE 203


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.127    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,473
Number of Sequences: 317
Number of extensions: 5869
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 597
length of database: 114,650
effective HSP length: 61
effective length of query: 536
effective length of database: 95,313
effective search space: 51087768
effective search space used: 51087768
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)