GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl
4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    28   2.0  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   2.7  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   6.1  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 45  AVVIFSLLIIV--YFTSNDGAFKIFAKQNEVISGKGQIVECSSAYLREI 91
           +VV+F+L++I+  Y T +     I      +ISG   +V C + Y+ E+
Sbjct: 502 SVVVFALMVILRPYATKHMNTLHIGVALMNLISGSFILVMCQAFYVEEL 550


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 181 KYSIGHYFGVNPERIYLTHPTFFSEITSKEAVTVHDEYWH-PHVDKETYKSFHYTTLLYL 239
           KY I  +  V  +   L+HP  F   ++   + +H  Y+H P   K  + S    +LL L
Sbjct: 92  KYEIDCWIKVQ-QSTELSHPRVFDSASTPLKINLHIIYYHPPQPRKMQFLSLEPLSLLLL 150

Query: 240 TD 241
            D
Sbjct: 151 KD 152


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 203 FSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLLYL----TDYNIDFKGGRFVFIDEKY 258
           FS  + K+  T+H       VD E Y+ ++     YL     DY++ F      + +EKY
Sbjct: 74  FSISSRKDDFTLHHWVLKSEVDSEAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKY 133

Query: 259 --NRTIEPRKGR 268
             +RT+E  K R
Sbjct: 134 KKHRTLEDLKDR 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,721
Number of Sequences: 5004
Number of extensions: 58268
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 3
length of query: 317
length of database: 2,362,478
effective HSP length: 73
effective length of query: 244
effective length of database: 1,997,186
effective search space: 487313384
effective search space used: 487313384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)