GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl
4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0307 - 7293150-7293488,7293877-7294248,7294640-7294690,729...    33   0.30 
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    29   4.9  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    29   4.9  
01_01_0979 + 7743243-7744063,7744141-7744324,7745242-7745425,774...    28   8.6  

>03_02_0307 -
           7293150-7293488,7293877-7294248,7294640-7294690,
           7295293-7295365,7295931-7296166
          Length = 356

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 269 VSMFTSGKENLHYVEKVTSGTRYAVTISFTCDKQY 303
           V ++T+   N H V++VT G R  +T+ FT D  Y
Sbjct: 105 VVIYTADNSNTHCVDEVTEGERLTLTLWFTRDSAY 139


>05_04_0124 +
           18232961-18236636,18236810-18237288,18237549-18237629,
           18238033-18238041,18238096-18238248
          Length = 1465

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 164 VFTEKDFTTYKVVKNKIKYSIGHYFGVNPERIYLTHPTFFSEITSKEAVTVHDEYWHPHV 223
           V   ++F+   +VK  I  +IG+  G+  + + L       E++ K  + V D+ W+   
Sbjct: 222 VCVSENFSVPDIVKGIIDTAIGNDCGLKSDNLELLQQRLREELSQKRYLLVLDDVWNEDE 281

Query: 224 DK 225
            K
Sbjct: 282 QK 283


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 164 VFTEKDFTTYKVVKNKIKYSIGHYFGVNPERIYLTHPTFFSEITSKEAVTVHDEYWHPHV 223
           V   ++F+   +VK  I  +IG+  G+  + + L       E++ K  + V D+ W+   
Sbjct: 222 VCVSENFSVPDIVKGIIDTAIGNDCGLKSDNLELLQQRLREELSQKRYLLVLDDVWNEDE 281

Query: 224 DK 225
            K
Sbjct: 282 QK 283


>01_01_0979 +
           7743243-7744063,7744141-7744324,7745242-7745425,
           7746640-7746746
          Length = 431

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/54 (27%), Positives = 20/54 (37%)

Query: 264 PRKGRVSMFTSGKENLHYVEKVTSGTRYAVTISFTCDKQYAIGDPDKRKFNNDL 317
           P  G +  FT     +H     T  T+            Y + DP+   FNNDL
Sbjct: 93  PGPGELRSFTDADGKVHTYHVTTMPTQRYFVCDIAARTAYYLPDPEGCVFNNDL 146


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,984,549
Number of Sequences: 37544
Number of extensions: 301429
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 4
length of query: 317
length of database: 14,793,348
effective HSP length: 82
effective length of query: 235
effective length of database: 11,714,740
effective search space: 2752963900
effective search space used: 2752963900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)