BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl 4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase (317 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0307 - 7293150-7293488,7293877-7294248,7294640-7294690,729... 33 0.30 05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 29 4.9 05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 29 4.9 01_01_0979 + 7743243-7744063,7744141-7744324,7745242-7745425,774... 28 8.6 >03_02_0307 - 7293150-7293488,7293877-7294248,7294640-7294690, 7295293-7295365,7295931-7296166 Length = 356 Score = 33.1 bits (72), Expect = 0.30 Identities = 14/35 (40%), Positives = 21/35 (60%) Query: 269 VSMFTSGKENLHYVEKVTSGTRYAVTISFTCDKQY 303 V ++T+ N H V++VT G R +T+ FT D Y Sbjct: 105 VVIYTADNSNTHCVDEVTEGERLTLTLWFTRDSAY 139 >05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629, 18238033-18238041,18238096-18238248 Length = 1465 Score = 29.1 bits (62), Expect = 4.9 Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 164 VFTEKDFTTYKVVKNKIKYSIGHYFGVNPERIYLTHPTFFSEITSKEAVTVHDEYWHPHV 223 V ++F+ +VK I +IG+ G+ + + L E++ K + V D+ W+ Sbjct: 222 VCVSENFSVPDIVKGIIDTAIGNDCGLKSDNLELLQQRLREELSQKRYLLVLDDVWNEDE 281 Query: 224 DK 225 K Sbjct: 282 QK 283 >05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281, 18203336-18203551,18204257-18204361,18204761-18204919 Length = 1401 Score = 29.1 bits (62), Expect = 4.9 Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 164 VFTEKDFTTYKVVKNKIKYSIGHYFGVNPERIYLTHPTFFSEITSKEAVTVHDEYWHPHV 223 V ++F+ +VK I +IG+ G+ + + L E++ K + V D+ W+ Sbjct: 222 VCVSENFSVPDIVKGIIDTAIGNDCGLKSDNLELLQQRLREELSQKRYLLVLDDVWNEDE 281 Query: 224 DK 225 K Sbjct: 282 QK 283 >01_01_0979 + 7743243-7744063,7744141-7744324,7745242-7745425, 7746640-7746746 Length = 431 Score = 28.3 bits (60), Expect = 8.6 Identities = 15/54 (27%), Positives = 20/54 (37%) Query: 264 PRKGRVSMFTSGKENLHYVEKVTSGTRYAVTISFTCDKQYAIGDPDKRKFNNDL 317 P G + FT +H T T+ Y + DP+ FNNDL Sbjct: 93 PGPGELRSFTDADGKVHTYHVTTMPTQRYFVCDIAARTAYYLPDPEGCVFNNDL 146 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,984,549 Number of Sequences: 37544 Number of extensions: 301429 Number of successful extensions: 557 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 553 Number of HSP's gapped (non-prelim): 4 length of query: 317 length of database: 14,793,348 effective HSP length: 82 effective length of query: 235 effective length of database: 11,714,740 effective search space: 2752963900 effective search space used: 2752963900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 60 (28.3 bits)
- SilkBase 1999-2023 -