GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl
4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)             260   8e-70
SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_35183| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=3.9)             33   0.31 
SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)             33   0.31 
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   29   6.6  
SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)
          Length = 249

 Score =  260 bits (638), Expect = 8e-70
 Identities = 124/245 (50%), Positives = 165/245 (67%), Gaps = 6/245 (2%)

Query: 67  FAKQNEVISGKGQIVECSSAYLREIDKFEGCFPKQCKRFVTDKVITDKEVDELLMIAXXX 126
           F   ++ +S K   V+CS+ Y     KF+ C PK+C R V D V++ +E   L  +A   
Sbjct: 4   FVSVDDSVSRKFLNVKCSNDYGT---KFKSCVPKKCGRAVMDDVVSFEEAVYLADLAKRG 60

Query: 127 XXXXXXXXXXXILDLHSGALSMGQHFINFY---KRSEGKNVFTEKDFTTYKVVKNKIKYS 183
                      ILDLHSGAL+ G+ F+N Y   K+ +   +FT+KDF  YK VKNKIK +
Sbjct: 61  MKHGGSSGGPTILDLHSGALTYGEKFVNIYTLAKKLKTGELFTKKDFEVYKQVKNKIKNA 120

Query: 184 IGHYFGVNPERIYLTHPTFFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLLYLTDYN 243
           I   F ++   +YLT PTFFS +T+K A T+HDEYWHPH+DK TY SF+YT+LLYL+DY 
Sbjct: 121 IATEFNIDQNSLYLTKPTFFSRMTAKPAKTIHDEYWHPHIDKTTYGSFYYTSLLYLSDYG 180

Query: 244 IDFKGGRFVFIDEKYNRTIEPRKGRVSMFTSGKENLHYVEKVTSGTRYAVTISFTCDKQY 303
            +F GGRFVF+D+  N T+EP+  RVS FTSG ENLH+VEKV +GTR+A+T+SFTCD ++
Sbjct: 181 RNFTGGRFVFVDKNTNHTVEPKTARVSFFTSGSENLHHVEKVKNGTRFAITVSFTCDPKF 240

Query: 304 AIGDP 308
           AI DP
Sbjct: 241 AITDP 245


>SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 839

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 234 TTLLYLTDYNIDFKGGRFVFI--DEKYNRTIEPRKGRVSMFTSGKENLHYVEKVTSGTRY 291
           + LLYL   N DF+GG F+F   +E     ++P+ GR+  F++G ENLH V  V  G R 
Sbjct: 732 SALLYL---NEDFEGGEFIFTHPNETIQAAVKPKCGRMVGFSAGVENLHGVLGV-EGRRC 787

Query: 292 AVTISFT 298
           AV + FT
Sbjct: 788 AVALWFT 794


>SB_35183| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=3.9)
          Length = 231

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH++ +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 35  MSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 94

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           +F  +TS  ++T H   +  +V      + HY+T   Y+T
Sbjct: 95  YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVT 134



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH++ +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 52  MSLTQHYLTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 111

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           +F  +TS  ++T H   +  +V      + HY+T   Y+T
Sbjct: 112 YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVT 151



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH+  +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 69  MSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 128

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           +F  +TS  ++T H   +  +V      + HY+T   Y+T
Sbjct: 129 YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVT 168



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH+  +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 86  MSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 145

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTT 235
           +F  +TS  ++T H   +  +V      + HY+T
Sbjct: 146 YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 179


>SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)
          Length = 409

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 143 SGALSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLT 198
           + A+S+ QH+  +++        T+   T ++ V + +     YS    +  +P  +   
Sbjct: 53  TSAMSLTQHYSTYFQYVTSPMSLTQHYLTYFQYVTSAMSLTQHYSTYFQYVTSPMSLTQH 112

Query: 199 HPTFFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           + T+F  +TS  ++T H   +  +V      + HY T L Y+T
Sbjct: 113 YSTYFQYVTSAMSLTQHYLTYFQYVTSPMSLTQHYLTYLQYVT 155



 Score = 33.1 bits (72), Expect = 0.31
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH++ +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 226 MSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 285

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           +F  +TS  ++T H   +  +V      + HY+T   Y+T
Sbjct: 286 YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVT 325



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH++ +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 243 MSLTQHYLTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 302

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           +F  +TS  ++T H   +  +V      + HY+T   Y+T
Sbjct: 303 YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVT 342



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 143 SGALSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLT 198
           + A+S+ QH++ +++        T+   T  + V + +     YS    +  +P  +   
Sbjct: 121 TSAMSLTQHYLTYFQYVTSPMSLTQHYLTYLQYVTSPMSLTQHYSTYFQYVTSPMSLTQH 180

Query: 199 HPTFFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           + T+F  +TS  ++T H   +  +V      + HY T   Y+T
Sbjct: 181 YLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVT 223



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH+  +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 260 MSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 319

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLL-YLT 240
           +F  +TS  ++T H   +  +V      + HY+T   Y+T
Sbjct: 320 YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVT 359



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 146 LSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIK----YSIGHYFGVNPERIYLTHPT 201
           +S+ QH+  +++        T+   T ++ V + +     YS    +  +P  +   + T
Sbjct: 277 MSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 336

Query: 202 FFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTT 235
           +F  +TS  ++T H   +  +V      + HY+T
Sbjct: 337 YFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYST 370


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 222 HVDKETYKSFHYTTLLYLTDYNIDFKGG--RFVFIDEKYNRTIEPRKGRVSMFTSGKENL 279
           HVD         T + YL +      GG  R    D+  +  +EP   RV +F S + N 
Sbjct: 204 HVDNPDGDGRCLTVIFYLNENWCTKDGGVLRIYQDDDNSHIDVEPLFNRVLLFWSDRRNP 263

Query: 280 HYVEKVTSGTRYAVTI 295
           H V   +   R+AVT+
Sbjct: 264 HEV-LPSYAPRFAVTV 278


>SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 164 VFTEKDFTTYKVVKNKI-KYSIGHYFGVNPERIYLTHPTFFSEITSKEAVTVHDEYWH-P 221
           V+  KD   + +  + + ++   HY G NP         ++  + +    T+  +YW+ P
Sbjct: 794 VYGSKDSQAFPITNSVLNRFGNSHYSGGNPLNAVTEPKDYWDWVQNSLVPTLTPQYWYGP 853

Query: 222 HVDKETYK 229
           +VD    K
Sbjct: 854 YVDHREEK 861


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 289 TRYAVTISFTCDKQYAIGDPDKR 311
           T Y+ TI+ TCD+ YA+  P+ R
Sbjct: 912 TTYSSTINITCDEGYALIGPESR 934


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,159
Number of Sequences: 59808
Number of extensions: 382101
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 21
length of query: 317
length of database: 16,821,457
effective HSP length: 82
effective length of query: 235
effective length of database: 11,917,201
effective search space: 2800542235
effective search space used: 2800542235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)