GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl
4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase
         (317 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          25   2.1  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   3.7  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            24   4.9  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    24   6.4  

>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 254 IDEKYNRTIEPRKGRVSMFTSGKENLHYVEK 284
           +D+   + +E  +G+ + F  GK   HY+ +
Sbjct: 376 VDQAVKKQLEELRGKFATFAKGKNYQHYLSE 406


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 17/77 (22%), Positives = 30/77 (38%)

Query: 153 INFYKRSEGKNVFTEKDFTTYKVVKNKIKYSIGHYFGVNPERIYLTHPTFFSEITSKEAV 212
           +N   +    NV+ E+++  YK+  N   Y       V  E I+L     ++       V
Sbjct: 63  VNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEV 122

Query: 213 TVHDEYWHPHVDKETYK 229
           T+  +    H  K  +K
Sbjct: 123 TIMTKAILHHTGKVVWK 139


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 56  YFTSNDGAFKIFAKQNEVISGKGQIVECSSAYLREIDKFEGCFPKQCKRF 105
           Y  + DGA ++     E   G  ++ EC   ++R        +P +CK F
Sbjct: 394 YLHTLDGALELVRALVEPAGGSIELEECERIFVR----LYADYPAECKEF 439


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 84  SSAYLREIDKFEGCFPKQ 101
           SS + R +DKFE C  K+
Sbjct: 285 SSKFTRRVDKFEKCVVKR 302


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,853
Number of Sequences: 2123
Number of extensions: 11218
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 317
length of database: 516,269
effective HSP length: 64
effective length of query: 253
effective length of database: 380,397
effective search space: 96240441
effective search space used: 96240441
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)