GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl
4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase
         (317 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78537-4|CAB01721.1|  569|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z68014-14|CAA92030.1|  569|Caenorhabditis elegans Hypothetical p...    31   0.82 
Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z78537-4|CAB01721.1|  569|Caenorhabditis elegans Hypothetical
           protein W04G3.8 protein.
          Length = 569

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 138 ILDLHSGALSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIKYSI 184
           +L LHS   S  Q F  +    EGKN F +  +  Y ++ N +KY +
Sbjct: 466 MLQLHSSETSDAQPFWIYKLGPEGKNSFGDSQY-EYAIISNWVKYPV 511


>Z68014-14|CAA92030.1|  569|Caenorhabditis elegans Hypothetical
           protein W04G3.8 protein.
          Length = 569

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 138 ILDLHSGALSMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIKYSI 184
           +L LHS   S  Q F  +    EGKN F +  +  Y ++ N +KY +
Sbjct: 466 MLQLHSSETSDAQPFWIYKLGPEGKNSFGDSQY-EYAIISNWVKYPV 511


>Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical
           protein F38H4.4 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 171 TTYKVVKNKIKYSIGHYFGVNPERIYLT-----HPTFFSEITSKEAVTVHDEYWHPHVD- 224
           T ++ VKN  K        ++  +++L+     H ++    T K A+       H   D 
Sbjct: 218 TKHQFVKNMHKNRFADVICLDHSKVHLSDSSYIHASYLELDTQKRAILTQLPLPHTSADF 277

Query: 225 -KETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIEPRKGRVSMFTSGKENLHYVE 283
            +   +      LL LTD   D  GG FVF   +     E R  RV  F   +    +V 
Sbjct: 278 WQMIIEQRVKCVLLLLTDSEYDSLGGDFVFPRNQDFLNFEERSIRVGEFKRVEIMDGWVL 337

Query: 284 KVTS 287
           KV S
Sbjct: 338 KVVS 341


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,487,120
Number of Sequences: 27539
Number of extensions: 308217
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 3
length of query: 317
length of database: 12,573,161
effective HSP length: 81
effective length of query: 236
effective length of database: 10,342,502
effective search space: 2440830472
effective search space used: 2440830472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)