GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl
4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase
         (317 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.87 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   8.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   8.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 194 RIYLTHPTFFSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLLYLTD-YNI 244
           +I  T PT FS +T K    + DEY +  +D + + +   + L  L D YN+
Sbjct: 351 KILATEPTLFSNVTPKFPRNI-DEYNNNDLDTKKWNN-KISALRALNDLYNV 400


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/77 (22%), Positives = 30/77 (38%)

Query: 153 INFYKRSEGKNVFTEKDFTTYKVVKNKIKYSIGHYFGVNPERIYLTHPTFFSEITSKEAV 212
           +N   +    NV+ E+++  YK+  N   Y       V  E I+L     ++       V
Sbjct: 60  VNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEV 119

Query: 213 TVHDEYWHPHVDKETYK 229
           T+  +    H  K  +K
Sbjct: 120 TIMTKAILHHTGKVVWK 136


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 32  SPKSNIPLRVLSRAVVIFSLLIIVYFTSNDGAFKIFAKQNEVISG 76
           +P+S    RVL      F+++I+  +T+N  AF +  +    ++G
Sbjct: 630 TPRS-FSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTG 673


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 206 ITSKEAVTVHDEYWHPHVDKETYKSFHYTTLLYLTDYNID 245
           I+S    T+H+  +  + +   Y + +Y   LY    NI+
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 206 ITSKEAVTVHDEYWHPHVDKETYKSFHYTTLLYLTDYNID 245
           I+S    T+H+  +  + +   Y + +Y   LY    NI+
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,603
Number of Sequences: 429
Number of extensions: 3698
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 317
length of database: 140,377
effective HSP length: 58
effective length of query: 259
effective length of database: 115,495
effective search space: 29913205
effective search space used: 29913205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)