GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001476-TA|BGIBMGA001476-PA|IPR006620|Prolyl
4-hydroxylase, alpha subunit, IPR008162|Inorganic pyrophosphatase
         (317 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68080.1 68414.m07777 expressed protein                             53   2e-07
At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    32   0.58 
At3g21140.1 68416.m02671 expressed protein                             30   1.8  

>At1g68080.1 68414.m07777 expressed protein
          Length = 383

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 219 WHPHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIEPRKGRVSMFTSGKEN 278
           WH   ++   K   +  + YL  Y  DF GG F F   +   T+ P  G V M+T+   N
Sbjct: 92  WHSDDNRSYLKQRDFAAVCYLNSYEKDFIGGLFRFQSGE-PVTVAPSAGDVIMYTADDRN 150

Query: 279 LHYVEKVTSGTRYAVTISFTCDKQY 303
           +H V++VT G R  + + F+ D  +
Sbjct: 151 IHSVDEVTDGERLTLALWFSRDSSH 175


>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 217 EYWHPHVDKETYKSFHYTTLLYLTDYNIDFKGGRF----VFIDEKYNRTIEPRKGRVSMF 272
           E+ H   DK+ +K F+  TLL   D  +   G +       +DE   +TI+P +  ++  
Sbjct: 169 EFLHSGNDKDKFKFFYKATLLQQVDDILQSIGTKLNSANALLDE-MEKTIKPIEKEINEL 227

Query: 273 TSGKENLHYVEKVT 286
               +N+ +VE++T
Sbjct: 228 LEKIKNMEHVEEIT 241


>At3g21140.1 68416.m02671 expressed protein
          Length = 387

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 206 ITSKEAVTVHDEYW--HPHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE 263
           ++  E    H +Y   HPH   E + +FHY  +  ++D       G   ++D K    ++
Sbjct: 235 LSEDEQEWAHKQYIAKHPHGPSEQWGNFHYFRMQNISDIYFIGGFGTVAWVDVKEYEGLQ 294

Query: 264 PRKGRVSMFTSGKENLHYVEKVTS 287
           P K  V     G+ NL  +  + S
Sbjct: 295 PDKIAVD---GGERNLKELNAIFS 315


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,990,968
Number of Sequences: 28952
Number of extensions: 280253
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 3
length of query: 317
length of database: 12,070,560
effective HSP length: 81
effective length of query: 236
effective length of database: 9,725,448
effective search space: 2295205728
effective search space used: 2295205728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)