Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
         (577 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.3  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   3.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   6.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   6.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   6.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   6.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 328 LFLTGAAPPQLSSLSFYNC-----YSLQGTVLSAAMDSLPNLTTLK-LDL 371
           L L+G A   +  L+F NC       L G  L++  D+L +L  LK LDL
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDL 461



 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 415 EALTGLTELRRLNLSRN 431
           +ALTGLT LR  N S N
Sbjct: 255 DALTGLTVLRTFNASYN 271


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 420 LTELRRLNLSRNIHITNAVLK 440
           LTE RR  LSR++ +T A +K
Sbjct: 45  LTERRRQQLSRDLGLTEAQIK 65


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 81  KMGDKGPNKTPIPTYAFVTFSN 102
           K+GD GP   P P ++F  + +
Sbjct: 96  KVGDGGPLLQPYPDWSFAKYDD 117


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 155 RSRSRSKDLDEAGTSTKMSTV 175
           R+R  + DL  AG +TK++TV
Sbjct: 23  RARRGAADLSLAGNATKVNTV 43


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 81  KMGDKGPNKTPIPTYAFVTFSN 102
           K+GD GP   P P ++F  + +
Sbjct: 96  KVGDGGPLLQPYPDWSFAKYDD 117


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 81  KMGDKGPNKTPIPTYAFVTFSN 102
           K+GD GP   P P ++F  + +
Sbjct: 96  KVGDGGPLLQPYPDWSFAKYDD 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,738
Number of Sequences: 429
Number of extensions: 5218
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 577
length of database: 140,377
effective HSP length: 61
effective length of query: 516
effective length of database: 114,208
effective search space: 58931328
effective search space used: 58931328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)