Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 3e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.005
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.005
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.035
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 34 0.047
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.047
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.047
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.082
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.11
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.14
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 31 0.33
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.33
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 31 0.33
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.44
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.44
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 31 0.44
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 31 0.58
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 1.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 30 1.0
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 2.3
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 29 2.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 29 2.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 3.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 5.4
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 7.1
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
++V NL P T + LY F +G I S L +K +++ YAFV F P DA +A+
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRS----YAFVEFDEPEDAKEAM 63
Query: 111 EAPSHEKILRGRNLYTSPAD 130
E ++ IL R + SPA+
Sbjct: 64 ENMNY-SILCDRCIRVSPAN 82
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.5 bits (83), Expect = 0.005
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+Y+ NL + T E +F Q+G I S L K N P + FV ++N A +A+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLV---KDQNDKP-RGFGFVNYANHECAQKAV 318
Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVED 138
+ ++K +G+ LY A H+ E+
Sbjct: 319 D-ELNDKEYKGKKLYVGRAQKKHEREEE 345
Score = 31.9 bits (69), Expect = 0.25
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 32 PYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTP 91
P SV T + LYV L P T L+ +F G + S +++ +
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVAS--IRVCRDAVTRRS 120
Query: 92 IPTYAFVTFSNPADAHQALEAPSHEKILRGR 122
+ YA+V F N D +AL+ ++ +++GR
Sbjct: 121 LG-YAYVNFHNMEDGEKALDELNY-TLIKGR 149
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.5 bits (83), Expect = 0.005
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT-YAFVTFSNPADAHQ 108
+++V L T ++E+ +F G ++ + +P+ AFVTF+N D +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 109 ALEAPSHEKILRGRNLYTSPA-DSWHQPVED---ADGRVCWKPRFSRT--NVRSRSRSKD 162
A+E + K L R + A QP++D + + +P S + N S S D
Sbjct: 105 AIET-LNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSD 163
Query: 163 LDEAGTSTKMST 174
+EA T+T S+
Sbjct: 164 ENEANTATAPSS 175
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 34.7 bits (76), Expect = 0.035
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD 84
LYV+NLP T+ + ++ +F+ YG +K W+ D
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPD 35
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 34.3 bits (75), Expect = 0.047
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 37 SVPTKT---EDGIPIRKLYVTNLPPKTTRTELYGVFA-QYGLIKSCWLKMGDKGPNKTPI 92
S PT T + P +YV NLPP T+ EL +F+ Q G + C+ G+ GP
Sbjct: 411 STPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGN-GP----- 464
Query: 93 PTYAFVTFSNPADAHQALE 111
FV F N A +AL+
Sbjct: 465 --MCFVEFENIPYAMEALK 481
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.3 bits (75), Expect = 0.047
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
L++ NL K T E+Y +F +YG ++ +++G N AFV + N DA +A
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ--IRLG----NTVQTRGTAFVVYENVQDARRAC 67
Query: 111 E 111
E
Sbjct: 68 E 68
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.047
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRT--ELYGVFAQYGLIKSCWLKMGDKGPNKTPI 92
+ PT T P L+V NL +L +F+++G IKSC L P+
Sbjct: 406 VTPTPTSTPTIDPCN-LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLA---SYPSTEIS 461
Query: 93 PTYAFVTFSNPADAHQAL 110
Y FV+FS+P +A QA+
Sbjct: 462 KGYGFVSFSHPFEAVQAI 479
Score = 32.3 bits (70), Expect = 0.19
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWL---KMGDKGPNKTPIPTYAFVTFSNPADAH 107
+YV NLP ++L+ +F +G + K +K+P +AF+TF N A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP-TLFAFITFENKCSAD 80
Query: 108 QALEAPSHEKILRGRNL---YTSPADSWHQPVEDADGRVCW------KPRFSRTNVRSRS 158
A+ A + +G L YT + + +E+ ++ K RFS+ ++
Sbjct: 81 NAI-ASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKE 139
Query: 159 RSKDLDEAGTSTK 171
+ E STK
Sbjct: 140 TRPTVSEVRVSTK 152
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.082
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 46 IPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPAD 105
IP +L V+N+ T ++ +F +G I+ L+ D+ +K + ++ + NP
Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK----GFGYIQYRNPIS 392
Query: 106 AHQALEAPSHEKILRGRNL 124
A ALE + L GRN+
Sbjct: 393 ARNALEKMNGFD-LAGRNM 410
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.1 bits (72), Expect = 0.11
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
+V R+ + + AP G +P T P++ +YV NLPP T E+ + G I+S
Sbjct: 87 NVSRVTSPNVANFAP-GYFPLPNNTTQ--PVKTVYVGNLPPNTPIDEILSC-VRTGPIES 142
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
W+ P AF++F +P+ A
Sbjct: 143 AWI---------LPEKNCAFISFLDPSHA 162
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.7 bits (71), Expect = 0.14
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LYVTN PP ++ +F+ YG + N+ + +V P +AH AL
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNR----RFCYVQMRKPDEAHNAL 723
Query: 111 EAPSHEKIL 119
+ H+K+L
Sbjct: 724 QL--HKKLL 730
Score = 27.9 bits (59), Expect = 4.1
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R+LYVTN+ K ++ F YG ++S + K N+ + +V + DA
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRI---PKRFNQH--KGFGYVVMTTNQDAEN 811
Query: 109 ALEAPSHEKILRGRNLYTS-PADSWHQP-VEDADGRVCWKPRFSRTNVRSRSRSK 161
AL A + R N+ S P +S + V D R K F T S K
Sbjct: 812 ALSAAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAK-SFETTESNKMSTPK 865
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 189 VKSCTILDVLNRDCLTHILNYIPIRDIILSERVSKGWQIMVQ 230
VK+ + + + L H+LN + D+ ERVS+ W +V+
Sbjct: 5 VKAKNPASIFSHETLLHVLNDLSAHDLAALERVSRSWNSIVR 46
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.33
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG-DKGPNKTPIPTYAFVTFSNPADAHQA 109
L+V NL +T + +L F+ G IK + + G N+ Y FVTFS DA +A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRG----YGFVTFSMLEDAQRA 62
Query: 110 LEAPSHEKILRGRNL 124
+ ++K L GR L
Sbjct: 63 AKELKNKK-LHGRIL 76
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 409 SSDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVS 464
++D E + +++++R N+S N +I NA++K + + DL C+G+S
Sbjct: 1122 ANDRIVEGIQIVSDMKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMS 1177
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.1 bits (67), Expect = 0.44
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 24 TISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIK 76
TI +L L ++ VP +P L + NLP + T +LY F Q G++K
Sbjct: 181 TIPSLGLEDISMQVVPNAFASTLP---LSILNLPAEVTPIDLYNHFKQAGVVK 230
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG 83
+L+V +PP+ TR ++ F YG I C L G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNG 38
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 31.1 bits (67), Expect = 0.44
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 39 PTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFV 98
P EDG K+++ L +TT L F Q+G + C + M D ++ + F+
Sbjct: 157 PFNREDG----KMFIGGLNWETTDDSLRDYFEQFGEVLDCTV-MRDSTTGRS--RGFGFL 209
Query: 99 TFSNPADAHQALEAPSH 115
TF NP ++ + H
Sbjct: 210 TFKNPKCVNEVMSKEHH 226
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 30.7 bits (66), Expect = 0.58
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQL 338
L D IA + +E D V++ + I K N+T V LFL+G
Sbjct: 191 LQDLCIRVIAEYINDIEAFG--DIGQVNMDKISQIISKNRSLNDTTVK-LFLSGGQ---- 243
Query: 339 SSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLC 372
+ L Y+C + L PNL TL L C
Sbjct: 244 TELKLYDCSKITADSLFQIAQYCPNLQTLHLTYC 277
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P L+V L P T +L +F+++G I SC + + DK + YAF+ F N
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQV-IRDKETGDS--LQYAFIEFDNKESV 298
Query: 107 HQA 109
+A
Sbjct: 299 EKA 301
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.9 bits (64), Expect = 1.0
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 22 IATISNLE-LAPYGIRSVPTKTEDGIPIRK---LYVTNLPPKTTRTELYGVFAQYGLIKS 77
+A+I+ L+ ++PY IR +++ +YV NL TT ++Y +F++ G I+
Sbjct: 1 MASITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRR 60
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALE 111
+ MG KTP + FV + DA +L+
Sbjct: 61 --IIMGVDRFTKTPC-GFCFVEYFENQDALDSLK 91
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 28.7 bits (61), Expect = 2.3
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGP-NKTPIPTYAFVTFSNPAD 105
P+R + V NL T+ + +F YGLI ++ + K NK Y ++ +
Sbjct: 97 PLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNK----GYCYIEYVYHDQ 152
Query: 106 AHQALEAPSHEKILRGRNLYTS----PADSWHQPVEDADGRVCWKPRFSRTNVRSRSRS 160
A A++ ++ + L G L+ S P +S H+ + + ++P S+ N +S
Sbjct: 153 AANAVDKMNNAE-LDGEELFVSIKRFPFESLHKNHKHYEN--SYRPSRSQNNSHYNDKS 208
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 338 LSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLC 372
L +++F N +SL +L D+ PNL L + C
Sbjct: 122 LVTINFSNIFSLPANILEYISDNCPNLKALNIGNC 156
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 413 FCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDG 462
F E L EL L + N+ + N I C L+Y+N + DG
Sbjct: 469 FFEIFASLPELEHLEIPDNVALQNKHAIHITDCCPNLKYVNFSNSISLDG 518
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV N+P + ++ +F Q G +KS L + P Y F + +PA A A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVI---DPESGQPKGYGFCEYHDPATAASAV 63
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 403 VCFTTQSSDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMD 456
V Q +E L G+ EL NL ++ A +KQ+ + +LE LN+ D
Sbjct: 1050 VSILKQQKEEL-SVLKGVQELTINNLEEKVNYLEADVKQLPKLKKELESLNDKD 1102
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWL-KMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
K+ + NLP + T+ ++ + YG ++S + K D+ +AF F +A
Sbjct: 722 KILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSAR-----GFAFAEFVTAREAAN 776
Query: 109 ALEAPSHEKILRGRNL 124
A+ A + +L GR+L
Sbjct: 777 AMRALKNTHLL-GRHL 791
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,297
Number of Sequences: 5004
Number of extensions: 86736
Number of successful extensions: 233
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 37
length of query: 577
length of database: 2,362,478
effective HSP length: 77
effective length of query: 500
effective length of database: 1,977,170
effective search space: 988585000
effective search space used: 988585000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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