BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat, cysteine-containing subtype, IPR001810|Cyclin-like F-box (577 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04 SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-04 SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 39 0.013 SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.022 SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.051 SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.051 SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.067 SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.16 SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 34 0.27 SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) 34 0.27 SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.47 SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 33 0.83 SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.83 SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.83 SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.83 SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 32 1.1 SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 32 1.4 SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 32 1.4 SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4 SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9 SB_29493| Best HMM Match : PH (HMM E-Value=0.48) 31 1.9 SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9 SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5 SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082) 31 2.5 SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5 SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 31 3.3 SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3 SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 3.3 SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 31 3.3 SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3 SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3 SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4 SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4 SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 30 5.8 SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 29 7.7 SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021) 29 7.7 SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7 SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7 SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34) 29 7.7 SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7 SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34) 29 7.7 SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7 SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7 SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 7.7 >SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 558 Score = 44.4 bits (100), Expect = 3e-04 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%) Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77 H + I + E G+ + +D + RKL++ NL + + + + Q+G I+ Sbjct: 356 HARPLPPIGDGESGTSGVPLAAPEIDDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEH 415 Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124 GPN+ Y FV F DA +AL ++KI+ R L Sbjct: 416 FQFLFHGNGPNRGEPRGYCFVEFKKKEDARKALRG-LNKKIVLSRAL 461 >SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 321 Score = 43.2 bits (97), Expect = 6e-04 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 17/262 (6%) Query: 201 DCLTHILNYIPIRDIILSERVSKGWQIMVQEY-LAGVRVLKTSWWQAEAARLTTAVLRRV 259 D I +Y +++ RV + W I+ ++ G ++ E +T ++ V Sbjct: 31 DIWLQIFSYFSVKERASLARVCREWNILCRDSRFWGAVDFRSCHVSGE---ITDKIVESV 87 Query: 260 LARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHL----AHVDSC-- 313 +A + A+ D + +A CP L+ L LT SL+ A SC Sbjct: 88 VAYSCKIRIIDFSSKRCHAVTDTSLTHVANHCPGLQRLNLTGKSLITNRGLGAIARSCGD 147 Query: 314 IEKITVANNTHVT--GLFLTGAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDL 371 +E++ ++ + V+ G+ + P+L LS NC L LSA +L TL L Sbjct: 148 LEQLFLSGCSRVSDRGVRTLASKCPKLEKLSLSNCLRLTDKSLSAISRKCSSLKTLDLSG 207 Query: 372 CPAAMWKIVPMILKTXXXXXXXXXXXXXXXXVCFTTQSSDEFCEALTGLTELRRLNLSRN 431 C KI +K + + + LT + +L + ++ Sbjct: 208 CV----KITDRGIKALSRYSEHLTDINLKDTTGISIEGIELLARGAPQLTRI-QLGIVQD 262 Query: 432 IHITNAVLKQIGQTCHKLEYLN 453 T A L I + C L+YL+ Sbjct: 263 SAQTVAALNIIVKHCSNLQYLS 284 >SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) Length = 507 Score = 38.7 bits (86), Expect = 0.013 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109 ++YV NLP +L+ +F +YG I LK +G P +AFV F +P DA A Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLK-NRRGAG----PPFAFVEFEDPRDAEDA 316 Query: 110 LEA-PSHE 116 ++ HE Sbjct: 317 VKGRDGHE 324 >SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 435 Score = 37.9 bits (84), Expect = 0.022 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Query: 40 TKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVT 99 TK E G+ + L V LP TT +E+ F ++G I C +K+ PN + FV Sbjct: 107 TKVE-GVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKL---DPNTRRSRGFGFVR 162 Query: 100 FSNPADAHQALEAPSHEKILRGR 122 F DA L + SH ++GR Sbjct: 163 FKKDEDAKNVL-STSHR--IQGR 182 Score = 32.3 bits (70), Expect = 1.1 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94 +R K E +P +KL+V LP TT L FAQ+G + ++ P Sbjct: 186 VRLPRPKEELNVP-KKLFVGRLPESTTEKTLMEYFAQFGEVTDVYI--------PKPFRH 236 Query: 95 YAFVTFSNPAD 105 + FVTF++ A+ Sbjct: 237 FGFVTFASVAN 247 >SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 718 Score = 36.7 bits (81), Expect = 0.051 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110 LY+ NL L F+ YG I S + DKG +K + FV FS+P +A +A+ Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSK----GFGFVCFSSPEEATKAV 269 Query: 111 EAPSHEKILRGRNLYTSPA 129 + +IL + LY + A Sbjct: 270 -TEMNGRILISKPLYVALA 287 >SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1309 Score = 36.7 bits (81), Expect = 0.051 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108 R LYV NL PK T+ + +F + + C KM + +K P Y FV F ADA + Sbjct: 369 RSLYVGNLDPKCTQELICSIFNKIAKVVRC--KMINSPTDKGP---YCFVEFETHADAQE 423 Query: 109 A 109 A Sbjct: 424 A 424 Score = 29.5 bits (63), Expect = 7.7 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG 86 +YV NLPP EL +F+QYG I + DKG Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKV-FADKG 651 >SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 371 Score = 36.3 bits (80), Expect = 0.067 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%) Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG----PNKTPIPT-YAFVTFSNPA 104 K+Y NLP K T+ EL VF L + L + + + P + FVTF+NP Sbjct: 51 KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110 Query: 105 DAHQALEAPSHEKILRGRNLYTSPADS 131 DA A+++ + +++ +GR L +P+ S Sbjct: 111 DAQTAVKSLNGKEV-QGRTLKIAPSIS 136 >SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 389 Score = 35.1 bits (77), Expect = 0.16 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110 L + +PP ++ ++ +F G + SC L + D+ ++ YAFV + NP DA++A+ Sbjct: 29 LIINYVPPSMSQEDIKKIFGTVGNVTSCKL-IRDRATGQSL--GYAFVNYDNPDDANKAV 85 Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPR 148 + + L+ + L S A +++A+ + P+ Sbjct: 86 REMNGAR-LQNKTLKVSFARPSSTEIKNANLYISGLPK 122 Score = 32.3 bits (70), Expect = 1.1 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 13/74 (17%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110 ++V LP + T LY +F+ YG I + LK+ DKG Y FV SN +A A+ Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKL-DKG--------YGFVNMSNYEEACHAI 324 Query: 111 ----EAPSHEKILR 120 P H K R Sbjct: 325 CCLNGTPQHGKYSR 338 >SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) Length = 496 Score = 34.3 bits (75), Expect = 0.27 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 38 VPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAF 97 +P+K + +RK+++ L TT L F+Q+G I C + D G ++ + F Sbjct: 39 LPSKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRD-GRSR----GFGF 93 Query: 98 VTFSNPADAHQALEAPSH 115 VT+ + ++ L+ H Sbjct: 94 VTYESSDSVNEVLKKKDH 111 >SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) Length = 447 Score = 34.3 bits (75), Expect = 0.27 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAA---- 334 LND I+ CP+L+ L L + H H+ +E + + L A Sbjct: 163 LNDDALLKISTNCPQLQSLCLNECKNFHGKHLRKVMENCPHITSLLIRFTKLNDVALMSV 222 Query: 335 ---PPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLC 372 ++ L CY + T LS+ + LPN+ K++ C Sbjct: 223 NWDRTKVQELDLTGCYFVTTTGLSSVLTRLPNVRYFKMNQC 263 >SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) Length = 1531 Score = 33.5 bits (73), Expect = 0.47 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108 R L+V N+ TT +L F +YG + +K K P P YAFV F+ + A Q Sbjct: 249 RTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIK---KQPGNNP---YAFVQFAELSSAIQ 302 Query: 109 ALEAPSHEKILRGR 122 A E + R R Sbjct: 303 ARRKMDREYVGRNR 316 >SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) Length = 209 Score = 32.7 bits (71), Expect = 0.83 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106 P L+V L P TT +L +F+++G I SC + K YAF+ F D Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESL---QYAFIEFEKDEDC 174 Query: 107 HQA 109 +A Sbjct: 175 ERA 177 >SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) Length = 419 Score = 32.7 bits (71), Expect = 0.83 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 37 SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96 S+P E+ + LY+ L TT +L + +YG I S + DK N Y Sbjct: 88 SLPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAIL-DKDTNL--CKGYG 144 Query: 97 FVTFSNPADAHQALEA 112 FV F +P A +A+ A Sbjct: 145 FVDFESPISAQKAVAA 160 >SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 550 Score = 32.7 bits (71), Expect = 0.83 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%) Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107 I LYV L K T +L F Q+G ++S + P AFV F++ A A Sbjct: 303 ITTLYVGGLEGKVTEQDLRDHFYQFGELRSI---------SMVPRQNCAFVCFTSRAAAE 353 Query: 108 QALEAPSHEKILRGRNL 124 A + ++ IL+GR L Sbjct: 354 AAADRSFNKLILKGRRL 370 >SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 721 Score = 32.7 bits (71), Expect = 0.83 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110 L+VTN+ + +++ +F+ YG IK+ + + D+ I YA V + +A AL Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNL-DRRTGF--IKGYALVEYETFKEAQSAL 351 Query: 111 EAPSHEKILRGRNL 124 EA + ++L G+N+ Sbjct: 352 EALNGAEML-GQNI 364 >SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) Length = 268 Score = 32.3 bits (70), Expect = 1.1 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSN 102 ++++V +TT +EL F +YG++K + G +K YAF+TF + Sbjct: 8 KRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSK----GYAFITFES 57 >SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) Length = 607 Score = 31.9 bits (69), Expect = 1.4 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 418 TGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLC 458 T T+L L ++ + IT++ L +I Q C KL+Y+ +M +C Sbjct: 382 TCCTDLECLEIAECLRITHSSLNRIAQNCVKLKYI-DMQVC 421 >SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) Length = 145 Score = 31.9 bits (69), Expect = 1.4 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%) Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108 R +Y+ + P ++ L VF YG I+ + G +K + +VT+ N A + Sbjct: 63 RTIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSK----GFGYVTYENAESAQR 118 Query: 109 ALEAPSHEKILRGRNLYTSP 128 AL A +H I+ G+ + P Sbjct: 119 AL-AGTH--IIDGKWVIAEP 135 >SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 179 Score = 31.9 bits (69), Expect = 1.4 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%) Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109 +L+V L +T +L VF YG + C LK Y F+ + +P DA +A Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTA-----------YGFIEYEDPRDAEEA 55 Query: 110 LEAPSHEKILRGR 122 + ++ K+ R Sbjct: 56 MRRENNRKLFGSR 68 >SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1153 Score = 31.5 bits (68), Expect = 1.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Query: 429 SRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIVEA 470 S N N K + + C K LN +D CGC+ +++ V++ Sbjct: 204 SINFSYCNITDKGVEELCLKCNLLNHIDFCGCNELTDNAVKS 245 >SB_29493| Best HMM Match : PH (HMM E-Value=0.48) Length = 1064 Score = 31.5 bits (68), Expect = 1.9 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 48 IRKLYVTNL--PPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPAD 105 + YVT PP+ + ++ GV ++ K WL++ +GP + + + + S Sbjct: 350 LENTYVTPAGPPPQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSRRGR 409 Query: 106 AHQALEAP 113 H+ + AP Sbjct: 410 HHEEVTAP 417 Score = 31.1 bits (67), Expect = 2.5 Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 57 PPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAP 113 PP+ + ++ GV ++ K WL++ +GP + + + + S H+ + AP Sbjct: 693 PPQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSRRGRHHEEVTAP 749 >SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 618 Score = 31.5 bits (68), Expect = 1.9 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110 L V NL T L F+Q+G ++ + +G +K + V FS +AH A+ Sbjct: 128 LRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKG----HGIVEFSRKNNAHNAM 183 Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRV 143 + S L GR + + Q +D DG V Sbjct: 184 QKISESLFLLGRTPRPISVEQYEQE-DDEDGLV 215 >SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 241 Score = 31.1 bits (67), Expect = 2.5 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 9/76 (11%) Query: 37 SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96 ++PT+ D +P L++TNLP +TT L +F Q+ K L P ++ I + Sbjct: 156 AIPTQQPD-LPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLV-----PGRSDI---S 206 Query: 97 FVTFSNPADAHQALEA 112 FV F N A A +A Sbjct: 207 FVEFENEVQAGTAKDA 222 >SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082) Length = 380 Score = 31.1 bits (67), Expect = 2.5 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 251 LTTAVLRRVLARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHLAHV 310 LT + VL R SL++L + S L D H IAR C L+ + LT V + + Sbjct: 32 LTDDIFLGVLRRGTASLVSLDLSASASLLTDFAVHCIARHCRNLKFVDLTGVE-VSTSSL 90 Query: 311 DSCIEKITV 319 S +K T+ Sbjct: 91 KSLSQKCTL 99 >SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 691 Score = 31.1 bits (67), Expect = 2.5 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 19/95 (20%) Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQL 338 +ND T +IAR C KL +L L D + + E I V +N L Sbjct: 82 VNDTTVRTIARRCKKLIQLSLKDRKFISFKAIR---ELIPVLSN---------------L 123 Query: 339 SSLSFYNC-YSLQGTVLSAAMDSLPNLTTLKLDLC 372 SL NC YS +L D N+ LKL C Sbjct: 124 CSLDMTNCFYSCNDNLLQVIGDHCHNIQVLKLANC 158 >SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) Length = 201 Score = 30.7 bits (66), Expect = 3.3 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%) Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109 KLYV NL +EL F ++G + W+ + P P +AFV + + DA +A Sbjct: 5 KLYVGNLGRNADSSELERAFEKFGRLSKVWVA---RNP-----PGFAFVEYEDYRDAEEA 56 Query: 110 L 110 + Sbjct: 57 V 57 >SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 828 Score = 30.7 bits (66), Expect = 3.3 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT-YAFVTFSNPADAHQA 109 LYV N+P + E F YG I +C L + DK T +P FV + A+A A Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRL-LRDK---STGLPKGCGFVLYDKKAEAQAA 190 Query: 110 LEAPS 114 + + S Sbjct: 191 ISSLS 195 >SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) Length = 260 Score = 30.7 bits (66), Expect = 3.3 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 13/91 (14%) Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG------------PNKTPIPTYA 96 ++L+VTN+P + +L +F +G+I + ++G P I + Sbjct: 68 KRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFG 127 Query: 97 FVTFSNPADAHQALEAPSHEKILRGRNLYTS 127 FVTF+ A+A++A E + I+ GR + S Sbjct: 128 FVTFNTAAEANKARE-KLNGTIVDGRKVEVS 157 >SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) Length = 1478 Score = 30.7 bits (66), Expect = 3.3 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 3 NDEEDNERYFSPDLLHVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTR 62 NDE NE+ + + H V + + ++ L P+ +R + T E +P +K + P + + Sbjct: 1013 NDEGGNEKIIAQEKEHQV-LERLHSI-LTPFLLRRLKTDVELSLPPKKEVLVRAPLTSKQ 1070 Query: 63 TELY 66 TE Y Sbjct: 1071 TEFY 1074 >SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 381 Score = 30.7 bits (66), Expect = 3.3 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Query: 31 APYGIRSVPTK-TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK-GPN 88 A +G R PT TE+ ++++ +P EL + + G I+ L+M G N Sbjct: 136 ARFGERGFPTTWTEESGT--EVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLN 193 Query: 89 KTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124 K +AF TF+ A+QA+ + + I GR L Sbjct: 194 KG----FAFCTFTEQTSAYQAITTLNDKDIRPGRRL 225 >SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 215 Score = 30.7 bits (66), Expect = 3.3 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110 +YV NLP T ++L+ VF +YG + + + DK ++ AF+ F + A A+ Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTI-LRDKETRES--RGVAFILFIDRQSAQNAV 68 Query: 111 EAPSHEKILRGRNL 124 A ++K + GR + Sbjct: 69 -AAVNKKQMFGRTI 81 >SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 871 Score = 30.3 bits (65), Expect = 4.4 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%) Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD-KGPNKTPIPTYAFVTFSNPAD 105 P L+V NLP + T T+ + + YG I+ +L + G +K Y FV ++ + Sbjct: 111 PESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSK----GYGFVEYATREN 166 Query: 106 AHQALE--APSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSR 151 A QA + + K + GR L + A+S D R + R R Sbjct: 167 AMQAKQQLLNTASKYIGGRILRVAFAESNLLTYADVHSRTLFVDRLPR 214 >SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 552 Score = 30.3 bits (65), Expect = 4.4 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 39 PTKTEDGIP--IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96 P + IP RK++V LPP E++ F ++G + W + + P YA Sbjct: 332 PNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGSLTVDWPHKAE-SKSYFPPKGYA 390 Query: 97 FVTFSNPADAHQALEA 112 F+ + + + A Sbjct: 391 FLLYLEEISVQKLISA 406 >SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 420 Score = 29.9 bits (64), Expect = 5.8 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 38 VPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAF 97 +P + + G+ R L+V NL T ++ F YG + + + D+ K+ Sbjct: 308 LPNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHI-LTDRETGKS--KGCGV 364 Query: 98 VTFSNPADAHQALEAPSH 115 V +P ++ LE P H Sbjct: 365 VKLRHPGTVNKILEEPVH 382 >SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) Length = 76 Score = 29.5 bits (63), Expect = 7.7 Identities = 11/29 (37%), Positives = 19/29 (65%) Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIK 76 ++ +YV N+P + T+L VF +YG I+ Sbjct: 1 VKSIYVRNVPLPMSETQLKAVFTKYGQIE 29 >SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021) Length = 923 Score = 29.5 bits (63), Expect = 7.7 Identities = 14/47 (29%), Positives = 28/47 (59%) Query: 410 SDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMD 456 SD ++L +L +L + N IT+A +K + ++C +LE++ +D Sbjct: 236 SDTAYKSLALCRKLHKLRIEGNNRITDASVKVLAKSCSQLEHVYMVD 282 >SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 791 Score = 29.5 bits (63), Expect = 7.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 129 ADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDEAGTS 169 +D WH P + PR S ++ SRSRS +G+S Sbjct: 173 SDEWHDPWQRTTSPKRRSPRRSSSSYSSRSRSSSSSSSGSS 213 >SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 753 Score = 29.5 bits (63), Expect = 7.7 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 33 YGIRSVPTKTEDGIPI-RKLYVTNLPPKTTRTELYGVFAQYGL 74 +G S+PT T PI RKL TN+ T L G+F ++G+ Sbjct: 435 FGRTSMPTSTTCKFPIVRKL--TNIQSSTVIAHLKGIFEEHGI 475 >SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34) Length = 743 Score = 29.5 bits (63), Expect = 7.7 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 277 SALNDRTAHSIARFCPKLEELKLTDSSLV----HLAHVDSC--IEKITVANNTHVTGLFL 330 S L D IA CP L +L+L ++ V A +D C +E++ ++ N ++G Sbjct: 612 SQLTDAAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISGNDKISGNVS 671 Query: 331 TGAAPPQLSSLSFYNCYSL 349 + A P S N L Sbjct: 672 SKALKPLFESAVLPNLRQL 690 >SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 184 Score = 29.5 bits (63), Expect = 7.7 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109 K+Y+ +L ++ E+ F YG +K W+ + P P +AF F + DA A Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVA---RNP-----PGFAFCIFDDRRDAEDA 84 Query: 110 L 110 + Sbjct: 85 V 85 >SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34) Length = 568 Score = 29.5 bits (63), Expect = 7.7 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 277 SALNDRTAHSIARFCPKLEELKLTDSSLV----HLAHVDSC--IEKITVANNTHVTGLFL 330 S L D IA CP L +L+L ++ V A +D C +E++ ++ N ++G Sbjct: 43 SQLTDAAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISGNDKISGNVS 102 Query: 331 TGAAPPQLSSLSFYNCYSL 349 + A P S N L Sbjct: 103 SKALKPLFESAVLPNLRQL 121 >SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 550 Score = 29.5 bits (63), Expect = 7.7 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 272 IDHHWSALNDRTAHSIARFCPKLEELK------LTDSSLVHLAHVDSCIEKITVANNTHV 325 +D W+ ++ ++ +A C KL E++ LT+ L H ++ I + + T V Sbjct: 282 LDLSWTGIDSKSLTHLAVNCRKLTEVRLWSCNLLTEKGLCHFFSYCPTLKSIELTDLTSV 341 Query: 326 T--GLFLTGAAPPQLSSLSFYNC 346 + + P + +L YNC Sbjct: 342 SDESIVCLAKCCPNIKNLLLYNC 364 >SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 640 Score = 29.5 bits (63), Expect = 7.7 Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 423 LRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIV 468 L+RL+L +T+A LK++ + C LE +N + EE+V Sbjct: 137 LKRLDLKACFKVTDASLKEVARYCTNLECINLYCTATTENGFEELV 182 >SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 1026 Score = 29.5 bits (63), Expect = 7.7 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109 +L + NL T L F+ +G + + G + + FV F+N DA +A Sbjct: 248 RLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMG-FGFVQFTNVFDAAKA 306 Query: 110 LEAPSHEKIL 119 LE + +KIL Sbjct: 307 LEEMNAKKIL 316 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.320 0.134 0.409 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,798,462 Number of Sequences: 59808 Number of extensions: 636108 Number of successful extensions: 1302 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 1262 Number of HSP's gapped (non-prelim): 65 length of query: 577 length of database: 16,821,457 effective HSP length: 86 effective length of query: 491 effective length of database: 11,677,969 effective search space: 5733882779 effective search space used: 5733882779 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 63 (29.5 bits)
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