Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 39 0.013
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.022
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.051
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.051
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.067
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.16
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 34 0.27
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) 34 0.27
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.47
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 33 0.83
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.83
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.83
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.83
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 32 1.1
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 32 1.4
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 32 1.4
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_29493| Best HMM Match : PH (HMM E-Value=0.48) 31 1.9
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082) 31 2.5
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 31 3.3
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 3.3
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 31 3.3
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 30 5.8
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 29 7.7
SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021) 29 7.7
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34) 29 7.7
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34) 29 7.7
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 7.7
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 44.4 bits (100), Expect = 3e-04
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
H + I + E G+ + +D + RKL++ NL + + + + Q+G I+
Sbjct: 356 HARPLPPIGDGESGTSGVPLAAPEIDDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEH 415
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
GPN+ Y FV F DA +AL ++KI+ R L
Sbjct: 416 FQFLFHGNGPNRGEPRGYCFVEFKKKEDARKALRG-LNKKIVLSRAL 461
>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 43.2 bits (97), Expect = 6e-04
Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 17/262 (6%)
Query: 201 DCLTHILNYIPIRDIILSERVSKGWQIMVQEY-LAGVRVLKTSWWQAEAARLTTAVLRRV 259
D I +Y +++ RV + W I+ ++ G ++ E +T ++ V
Sbjct: 31 DIWLQIFSYFSVKERASLARVCREWNILCRDSRFWGAVDFRSCHVSGE---ITDKIVESV 87
Query: 260 LARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHL----AHVDSC-- 313
+A + A+ D + +A CP L+ L LT SL+ A SC
Sbjct: 88 VAYSCKIRIIDFSSKRCHAVTDTSLTHVANHCPGLQRLNLTGKSLITNRGLGAIARSCGD 147
Query: 314 IEKITVANNTHVT--GLFLTGAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDL 371
+E++ ++ + V+ G+ + P+L LS NC L LSA +L TL L
Sbjct: 148 LEQLFLSGCSRVSDRGVRTLASKCPKLEKLSLSNCLRLTDKSLSAISRKCSSLKTLDLSG 207
Query: 372 CPAAMWKIVPMILKTXXXXXXXXXXXXXXXXVCFTTQSSDEFCEALTGLTELRRLNLSRN 431
C KI +K + + + LT + +L + ++
Sbjct: 208 CV----KITDRGIKALSRYSEHLTDINLKDTTGISIEGIELLARGAPQLTRI-QLGIVQD 262
Query: 432 IHITNAVLKQIGQTCHKLEYLN 453
T A L I + C L+YL+
Sbjct: 263 SAQTVAALNIIVKHCSNLQYLS 284
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.7 bits (86), Expect = 0.013
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
++YV NLP +L+ +F +YG I LK +G P +AFV F +P DA A
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLK-NRRGAG----PPFAFVEFEDPRDAEDA 316
Query: 110 LEA-PSHE 116
++ HE
Sbjct: 317 VKGRDGHE 324
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 37.9 bits (84), Expect = 0.022
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 40 TKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVT 99
TK E G+ + L V LP TT +E+ F ++G I C +K+ PN + FV
Sbjct: 107 TKVE-GVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKL---DPNTRRSRGFGFVR 162
Query: 100 FSNPADAHQALEAPSHEKILRGR 122
F DA L + SH ++GR
Sbjct: 163 FKKDEDAKNVL-STSHR--IQGR 182
Score = 32.3 bits (70), Expect = 1.1
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
+R K E +P +KL+V LP TT L FAQ+G + ++ P
Sbjct: 186 VRLPRPKEELNVP-KKLFVGRLPESTTEKTLMEYFAQFGEVTDVYI--------PKPFRH 236
Query: 95 YAFVTFSNPAD 105
+ FVTF++ A+
Sbjct: 237 FGFVTFASVAN 247
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 36.7 bits (81), Expect = 0.051
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LY+ NL L F+ YG I S + DKG +K + FV FS+P +A +A+
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSK----GFGFVCFSSPEEATKAV 269
Query: 111 EAPSHEKILRGRNLYTSPA 129
+ +IL + LY + A
Sbjct: 270 -TEMNGRILISKPLYVALA 287
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 36.7 bits (81), Expect = 0.051
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R LYV NL PK T+ + +F + + C KM + +K P Y FV F ADA +
Sbjct: 369 RSLYVGNLDPKCTQELICSIFNKIAKVVRC--KMINSPTDKGP---YCFVEFETHADAQE 423
Query: 109 A 109
A
Sbjct: 424 A 424
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG 86
+YV NLPP EL +F+QYG I + DKG
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKV-FADKG 651
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.3 bits (80), Expect = 0.067
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG----PNKTPIPT-YAFVTFSNPA 104
K+Y NLP K T+ EL VF L + L + + + P + FVTF+NP
Sbjct: 51 KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110
Query: 105 DAHQALEAPSHEKILRGRNLYTSPADS 131
DA A+++ + +++ +GR L +P+ S
Sbjct: 111 DAQTAVKSLNGKEV-QGRTLKIAPSIS 136
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 35.1 bits (77), Expect = 0.16
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
L + +PP ++ ++ +F G + SC L + D+ ++ YAFV + NP DA++A+
Sbjct: 29 LIINYVPPSMSQEDIKKIFGTVGNVTSCKL-IRDRATGQSL--GYAFVNYDNPDDANKAV 85
Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPR 148
+ + L+ + L S A +++A+ + P+
Sbjct: 86 REMNGAR-LQNKTLKVSFARPSSTEIKNANLYISGLPK 122
Score = 32.3 bits (70), Expect = 1.1
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
++V LP + T LY +F+ YG I + LK+ DKG Y FV SN +A A+
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKL-DKG--------YGFVNMSNYEEACHAI 324
Query: 111 ----EAPSHEKILR 120
P H K R
Sbjct: 325 CCLNGTPQHGKYSR 338
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 34.3 bits (75), Expect = 0.27
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 38 VPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAF 97
+P+K + +RK+++ L TT L F+Q+G I C + D G ++ + F
Sbjct: 39 LPSKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRD-GRSR----GFGF 93
Query: 98 VTFSNPADAHQALEAPSH 115
VT+ + ++ L+ H
Sbjct: 94 VTYESSDSVNEVLKKKDH 111
>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
Length = 447
Score = 34.3 bits (75), Expect = 0.27
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAA---- 334
LND I+ CP+L+ L L + H H+ +E + + L A
Sbjct: 163 LNDDALLKISTNCPQLQSLCLNECKNFHGKHLRKVMENCPHITSLLIRFTKLNDVALMSV 222
Query: 335 ---PPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLC 372
++ L CY + T LS+ + LPN+ K++ C
Sbjct: 223 NWDRTKVQELDLTGCYFVTTTGLSSVLTRLPNVRYFKMNQC 263
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 33.5 bits (73), Expect = 0.47
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R L+V N+ TT +L F +YG + +K K P P YAFV F+ + A Q
Sbjct: 249 RTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIK---KQPGNNP---YAFVQFAELSSAIQ 302
Query: 109 ALEAPSHEKILRGR 122
A E + R R
Sbjct: 303 ARRKMDREYVGRNR 316
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 32.7 bits (71), Expect = 0.83
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P L+V L P TT +L +F+++G I SC + K YAF+ F D
Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESL---QYAFIEFEKDEDC 174
Query: 107 HQA 109
+A
Sbjct: 175 ERA 177
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 32.7 bits (71), Expect = 0.83
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 37 SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
S+P E+ + LY+ L TT +L + +YG I S + DK N Y
Sbjct: 88 SLPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAIL-DKDTNL--CKGYG 144
Query: 97 FVTFSNPADAHQALEA 112
FV F +P A +A+ A
Sbjct: 145 FVDFESPISAQKAVAA 160
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 32.7 bits (71), Expect = 0.83
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
I LYV L K T +L F Q+G ++S + P AFV F++ A A
Sbjct: 303 ITTLYVGGLEGKVTEQDLRDHFYQFGELRSI---------SMVPRQNCAFVCFTSRAAAE 353
Query: 108 QALEAPSHEKILRGRNL 124
A + ++ IL+GR L
Sbjct: 354 AAADRSFNKLILKGRRL 370
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 32.7 bits (71), Expect = 0.83
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
L+VTN+ + +++ +F+ YG IK+ + + D+ I YA V + +A AL
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNL-DRRTGF--IKGYALVEYETFKEAQSAL 351
Query: 111 EAPSHEKILRGRNL 124
EA + ++L G+N+
Sbjct: 352 EALNGAEML-GQNI 364
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 32.3 bits (70), Expect = 1.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSN 102
++++V +TT +EL F +YG++K + G +K YAF+TF +
Sbjct: 8 KRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSK----GYAFITFES 57
>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
Length = 607
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 418 TGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLC 458
T T+L L ++ + IT++ L +I Q C KL+Y+ +M +C
Sbjct: 382 TCCTDLECLEIAECLRITHSSLNRIAQNCVKLKYI-DMQVC 421
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 31.9 bits (69), Expect = 1.4
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +Y+ + P ++ L VF YG I+ + G +K + +VT+ N A +
Sbjct: 63 RTIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSK----GFGYVTYENAESAQR 118
Query: 109 ALEAPSHEKILRGRNLYTSP 128
AL A +H I+ G+ + P
Sbjct: 119 AL-AGTH--IIDGKWVIAEP 135
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 31.9 bits (69), Expect = 1.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+L+V L +T +L VF YG + C LK Y F+ + +P DA +A
Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTA-----------YGFIEYEDPRDAEEA 55
Query: 110 LEAPSHEKILRGR 122
+ ++ K+ R
Sbjct: 56 MRRENNRKLFGSR 68
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 31.5 bits (68), Expect = 1.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 429 SRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIVEA 470
S N N K + + C K LN +D CGC+ +++ V++
Sbjct: 204 SINFSYCNITDKGVEELCLKCNLLNHIDFCGCNELTDNAVKS 245
>SB_29493| Best HMM Match : PH (HMM E-Value=0.48)
Length = 1064
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 48 IRKLYVTNL--PPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPAD 105
+ YVT PP+ + ++ GV ++ K WL++ +GP + + + + S
Sbjct: 350 LENTYVTPAGPPPQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSRRGR 409
Query: 106 AHQALEAP 113
H+ + AP
Sbjct: 410 HHEEVTAP 417
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 57 PPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAP 113
PP+ + ++ GV ++ K WL++ +GP + + + + S H+ + AP
Sbjct: 693 PPQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSRRGRHHEEVTAP 749
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 31.5 bits (68), Expect = 1.9
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
L V NL T L F+Q+G ++ + +G +K + V FS +AH A+
Sbjct: 128 LRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKG----HGIVEFSRKNNAHNAM 183
Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRV 143
+ S L GR + + Q +D DG V
Sbjct: 184 QKISESLFLLGRTPRPISVEQYEQE-DDEDGLV 215
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 31.1 bits (67), Expect = 2.5
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 37 SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
++PT+ D +P L++TNLP +TT L +F Q+ K L P ++ I +
Sbjct: 156 AIPTQQPD-LPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLV-----PGRSDI---S 206
Query: 97 FVTFSNPADAHQALEA 112
FV F N A A +A
Sbjct: 207 FVEFENEVQAGTAKDA 222
>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
Length = 380
Score = 31.1 bits (67), Expect = 2.5
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 251 LTTAVLRRVLARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHLAHV 310
LT + VL R SL++L + S L D H IAR C L+ + LT V + +
Sbjct: 32 LTDDIFLGVLRRGTASLVSLDLSASASLLTDFAVHCIARHCRNLKFVDLTGVE-VSTSSL 90
Query: 311 DSCIEKITV 319
S +K T+
Sbjct: 91 KSLSQKCTL 99
>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 691
Score = 31.1 bits (67), Expect = 2.5
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQL 338
+ND T +IAR C KL +L L D + + E I V +N L
Sbjct: 82 VNDTTVRTIARRCKKLIQLSLKDRKFISFKAIR---ELIPVLSN---------------L 123
Query: 339 SSLSFYNC-YSLQGTVLSAAMDSLPNLTTLKLDLC 372
SL NC YS +L D N+ LKL C
Sbjct: 124 CSLDMTNCFYSCNDNLLQVIGDHCHNIQVLKLANC 158
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 30.7 bits (66), Expect = 3.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
KLYV NL +EL F ++G + W+ + P P +AFV + + DA +A
Sbjct: 5 KLYVGNLGRNADSSELERAFEKFGRLSKVWVA---RNP-----PGFAFVEYEDYRDAEEA 56
Query: 110 L 110
+
Sbjct: 57 V 57
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 30.7 bits (66), Expect = 3.3
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT-YAFVTFSNPADAHQA 109
LYV N+P + E F YG I +C L + DK T +P FV + A+A A
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRL-LRDK---STGLPKGCGFVLYDKKAEAQAA 190
Query: 110 LEAPS 114
+ + S
Sbjct: 191 ISSLS 195
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.7 bits (66), Expect = 3.3
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG------------PNKTPIPTYA 96
++L+VTN+P + +L +F +G+I + ++G P I +
Sbjct: 68 KRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFG 127
Query: 97 FVTFSNPADAHQALEAPSHEKILRGRNLYTS 127
FVTF+ A+A++A E + I+ GR + S
Sbjct: 128 FVTFNTAAEANKARE-KLNGTIVDGRKVEVS 157
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 3 NDEEDNERYFSPDLLHVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTR 62
NDE NE+ + + H V + + ++ L P+ +R + T E +P +K + P + +
Sbjct: 1013 NDEGGNEKIIAQEKEHQV-LERLHSI-LTPFLLRRLKTDVELSLPPKKEVLVRAPLTSKQ 1070
Query: 63 TELY 66
TE Y
Sbjct: 1071 TEFY 1074
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.7 bits (66), Expect = 3.3
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 31 APYGIRSVPTK-TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK-GPN 88
A +G R PT TE+ ++++ +P EL + + G I+ L+M G N
Sbjct: 136 ARFGERGFPTTWTEESGT--EVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLN 193
Query: 89 KTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
K +AF TF+ A+QA+ + + I GR L
Sbjct: 194 KG----FAFCTFTEQTSAYQAITTLNDKDIRPGRRL 225
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 30.7 bits (66), Expect = 3.3
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV NLP T ++L+ VF +YG + + + DK ++ AF+ F + A A+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTI-LRDKETRES--RGVAFILFIDRQSAQNAV 68
Query: 111 EAPSHEKILRGRNL 124
A ++K + GR +
Sbjct: 69 -AAVNKKQMFGRTI 81
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 30.3 bits (65), Expect = 4.4
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD-KGPNKTPIPTYAFVTFSNPAD 105
P L+V NLP + T T+ + + YG I+ +L + G +K Y FV ++ +
Sbjct: 111 PESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSK----GYGFVEYATREN 166
Query: 106 AHQALE--APSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSR 151
A QA + + K + GR L + A+S D R + R R
Sbjct: 167 AMQAKQQLLNTASKYIGGRILRVAFAESNLLTYADVHSRTLFVDRLPR 214
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 39 PTKTEDGIP--IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
P + IP RK++V LPP E++ F ++G + W + + P YA
Sbjct: 332 PNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGSLTVDWPHKAE-SKSYFPPKGYA 390
Query: 97 FVTFSNPADAHQALEA 112
F+ + + + A
Sbjct: 391 FLLYLEEISVQKLISA 406
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 29.9 bits (64), Expect = 5.8
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 38 VPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAF 97
+P + + G+ R L+V NL T ++ F YG + + + D+ K+
Sbjct: 308 LPNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHI-LTDRETGKS--KGCGV 364
Query: 98 VTFSNPADAHQALEAPSH 115
V +P ++ LE P H
Sbjct: 365 VKLRHPGTVNKILEEPVH 382
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 29.5 bits (63), Expect = 7.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIK 76
++ +YV N+P + T+L VF +YG I+
Sbjct: 1 VKSIYVRNVPLPMSETQLKAVFTKYGQIE 29
>SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
Length = 923
Score = 29.5 bits (63), Expect = 7.7
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 410 SDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMD 456
SD ++L +L +L + N IT+A +K + ++C +LE++ +D
Sbjct: 236 SDTAYKSLALCRKLHKLRIEGNNRITDASVKVLAKSCSQLEHVYMVD 282
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 29.5 bits (63), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 129 ADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDEAGTS 169
+D WH P + PR S ++ SRSRS +G+S
Sbjct: 173 SDEWHDPWQRTTSPKRRSPRRSSSSYSSRSRSSSSSSSGSS 213
>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 29.5 bits (63), Expect = 7.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 33 YGIRSVPTKTEDGIPI-RKLYVTNLPPKTTRTELYGVFAQYGL 74
+G S+PT T PI RKL TN+ T L G+F ++G+
Sbjct: 435 FGRTSMPTSTTCKFPIVRKL--TNIQSSTVIAHLKGIFEEHGI 475
>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
Length = 743
Score = 29.5 bits (63), Expect = 7.7
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 277 SALNDRTAHSIARFCPKLEELKLTDSSLV----HLAHVDSC--IEKITVANNTHVTGLFL 330
S L D IA CP L +L+L ++ V A +D C +E++ ++ N ++G
Sbjct: 612 SQLTDAAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISGNDKISGNVS 671
Query: 331 TGAAPPQLSSLSFYNCYSL 349
+ A P S N L
Sbjct: 672 SKALKPLFESAVLPNLRQL 690
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.5 bits (63), Expect = 7.7
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+Y+ +L ++ E+ F YG +K W+ + P P +AF F + DA A
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVA---RNP-----PGFAFCIFDDRRDAEDA 84
Query: 110 L 110
+
Sbjct: 85 V 85
>SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)
Length = 568
Score = 29.5 bits (63), Expect = 7.7
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 277 SALNDRTAHSIARFCPKLEELKLTDSSLV----HLAHVDSC--IEKITVANNTHVTGLFL 330
S L D IA CP L +L+L ++ V A +D C +E++ ++ N ++G
Sbjct: 43 SQLTDAAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISGNDKISGNVS 102
Query: 331 TGAAPPQLSSLSFYNCYSL 349
+ A P S N L
Sbjct: 103 SKALKPLFESAVLPNLRQL 121
>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.5 bits (63), Expect = 7.7
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 272 IDHHWSALNDRTAHSIARFCPKLEELK------LTDSSLVHLAHVDSCIEKITVANNTHV 325
+D W+ ++ ++ +A C KL E++ LT+ L H ++ I + + T V
Sbjct: 282 LDLSWTGIDSKSLTHLAVNCRKLTEVRLWSCNLLTEKGLCHFFSYCPTLKSIELTDLTSV 341
Query: 326 T--GLFLTGAAPPQLSSLSFYNC 346
+ + P + +L YNC
Sbjct: 342 SDESIVCLAKCCPNIKNLLLYNC 364
>SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.5 bits (63), Expect = 7.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 423 LRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIV 468
L+RL+L +T+A LK++ + C LE +N + EE+V
Sbjct: 137 LKRLDLKACFKVTDASLKEVARYCTNLECINLYCTATTENGFEELV 182
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.5 bits (63), Expect = 7.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+L + NL T L F+ +G + + G + + FV F+N DA +A
Sbjct: 248 RLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMG-FGFVQFTNVFDAAKA 306
Query: 110 LEAPSHEKIL 119
LE + +KIL
Sbjct: 307 LEEMNAKKIL 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,798,462
Number of Sequences: 59808
Number of extensions: 636108
Number of successful extensions: 1302
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 65
length of query: 577
length of database: 16,821,457
effective HSP length: 86
effective length of query: 491
effective length of database: 11,677,969
effective search space: 5733882779
effective search space used: 5733882779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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