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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   3e-04
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   6e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 39   0.013
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.022
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                       37   0.051
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.051
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.067
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.16 
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 34   0.27 
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)                 34   0.27 
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             33   0.47 
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)                 33   0.83 
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 33   0.83 
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.83 
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.83 
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)                   32   1.1  
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)                 32   1.4  
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)                     32   1.4  
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_29493| Best HMM Match : PH (HMM E-Value=0.48)                       31   1.9  
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.9  
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)                   31   2.5  
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)                 31   3.3  
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)                 31   3.3  
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      31   3.3  
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.3  
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.4  
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.4  
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       30   5.8  
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)                 29   7.7  
SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)                 29   7.7  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)                    29   7.7  
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  
SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)                     29   7.7  
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  
SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        29   7.7  

>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 18  HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
           H   +  I + E    G+     + +D +  RKL++ NL  + +   +  +  Q+G I+ 
Sbjct: 356 HARPLPPIGDGESGTSGVPLAAPEIDDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEH 415

Query: 78  CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
                   GPN+     Y FV F    DA +AL    ++KI+  R L
Sbjct: 416 FQFLFHGNGPNRGEPRGYCFVEFKKKEDARKALRG-LNKKIVLSRAL 461


>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 43.2 bits (97), Expect = 6e-04
 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 17/262 (6%)

Query: 201 DCLTHILNYIPIRDIILSERVSKGWQIMVQEY-LAGVRVLKTSWWQAEAARLTTAVLRRV 259
           D    I +Y  +++     RV + W I+ ++    G    ++     E   +T  ++  V
Sbjct: 31  DIWLQIFSYFSVKERASLARVCREWNILCRDSRFWGAVDFRSCHVSGE---ITDKIVESV 87

Query: 260 LARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHL----AHVDSC-- 313
           +A      +         A+ D +   +A  CP L+ L LT  SL+      A   SC  
Sbjct: 88  VAYSCKIRIIDFSSKRCHAVTDTSLTHVANHCPGLQRLNLTGKSLITNRGLGAIARSCGD 147

Query: 314 IEKITVANNTHVT--GLFLTGAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDL 371
           +E++ ++  + V+  G+    +  P+L  LS  NC  L    LSA      +L TL L  
Sbjct: 148 LEQLFLSGCSRVSDRGVRTLASKCPKLEKLSLSNCLRLTDKSLSAISRKCSSLKTLDLSG 207

Query: 372 CPAAMWKIVPMILKTXXXXXXXXXXXXXXXXVCFTTQSSDEFCEALTGLTELRRLNLSRN 431
           C     KI    +K                    + +  +        LT + +L + ++
Sbjct: 208 CV----KITDRGIKALSRYSEHLTDINLKDTTGISIEGIELLARGAPQLTRI-QLGIVQD 262

Query: 432 IHITNAVLKQIGQTCHKLEYLN 453
              T A L  I + C  L+YL+
Sbjct: 263 SAQTVAALNIIVKHCSNLQYLS 284


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 38.7 bits (86), Expect = 0.013
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           ++YV NLP      +L+ +F +YG I    LK   +G      P +AFV F +P DA  A
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLK-NRRGAG----PPFAFVEFEDPRDAEDA 316

Query: 110 LEA-PSHE 116
           ++    HE
Sbjct: 317 VKGRDGHE 324


>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 37.9 bits (84), Expect = 0.022
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 40  TKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVT 99
           TK E G+ +  L V  LP  TT +E+   F ++G I  C +K+    PN      + FV 
Sbjct: 107 TKVE-GVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKL---DPNTRRSRGFGFVR 162

Query: 100 FSNPADAHQALEAPSHEKILRGR 122
           F    DA   L + SH   ++GR
Sbjct: 163 FKKDEDAKNVL-STSHR--IQGR 182



 Score = 32.3 bits (70), Expect = 1.1
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 35  IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           +R    K E  +P +KL+V  LP  TT   L   FAQ+G +   ++          P   
Sbjct: 186 VRLPRPKEELNVP-KKLFVGRLPESTTEKTLMEYFAQFGEVTDVYI--------PKPFRH 236

Query: 95  YAFVTFSNPAD 105
           + FVTF++ A+
Sbjct: 237 FGFVTFASVAN 247


>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score = 36.7 bits (81), Expect = 0.051
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           LY+ NL        L   F+ YG I S  +   DKG +K     + FV FS+P +A +A+
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSK----GFGFVCFSSPEEATKAV 269

Query: 111 EAPSHEKILRGRNLYTSPA 129
               + +IL  + LY + A
Sbjct: 270 -TEMNGRILISKPLYVALA 287


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 36.7 bits (81), Expect = 0.051
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           R LYV NL PK T+  +  +F +   +  C  KM +   +K P   Y FV F   ADA +
Sbjct: 369 RSLYVGNLDPKCTQELICSIFNKIAKVVRC--KMINSPTDKGP---YCFVEFETHADAQE 423

Query: 109 A 109
           A
Sbjct: 424 A 424



 Score = 29.5 bits (63), Expect = 7.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG 86
           +YV NLPP     EL  +F+QYG I    +   DKG
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKV-FADKG 651


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 36.3 bits (80), Expect = 0.067
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG----PNKTPIPT-YAFVTFSNPA 104
           K+Y  NLP K T+ EL  VF    L  +  L + +        + P    + FVTF+NP 
Sbjct: 51  KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110

Query: 105 DAHQALEAPSHEKILRGRNLYTSPADS 131
           DA  A+++ + +++ +GR L  +P+ S
Sbjct: 111 DAQTAVKSLNGKEV-QGRTLKIAPSIS 136


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           L +  +PP  ++ ++  +F   G + SC L + D+   ++    YAFV + NP DA++A+
Sbjct: 29  LIINYVPPSMSQEDIKKIFGTVGNVTSCKL-IRDRATGQSL--GYAFVNYDNPDDANKAV 85

Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPR 148
              +  + L+ + L  S A      +++A+  +   P+
Sbjct: 86  REMNGAR-LQNKTLKVSFARPSSTEIKNANLYISGLPK 122



 Score = 32.3 bits (70), Expect = 1.1
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 13/74 (17%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           ++V  LP + T   LY +F+ YG I +  LK+ DKG        Y FV  SN  +A  A+
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKL-DKG--------YGFVNMSNYEEACHAI 324

Query: 111 ----EAPSHEKILR 120
                 P H K  R
Sbjct: 325 CCLNGTPQHGKYSR 338


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 34.3 bits (75), Expect = 0.27
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 38  VPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAF 97
           +P+K  +   +RK+++  L   TT   L   F+Q+G I  C +   D G ++     + F
Sbjct: 39  LPSKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRD-GRSR----GFGF 93

Query: 98  VTFSNPADAHQALEAPSH 115
           VT+ +    ++ L+   H
Sbjct: 94  VTYESSDSVNEVLKKKDH 111


>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
          Length = 447

 Score = 34.3 bits (75), Expect = 0.27
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAA---- 334
           LND     I+  CP+L+ L L +    H  H+   +E      +  +    L   A    
Sbjct: 163 LNDDALLKISTNCPQLQSLCLNECKNFHGKHLRKVMENCPHITSLLIRFTKLNDVALMSV 222

Query: 335 ---PPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLC 372
                ++  L    CY +  T LS+ +  LPN+   K++ C
Sbjct: 223 NWDRTKVQELDLTGCYFVTTTGLSSVLTRLPNVRYFKMNQC 263


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           R L+V N+   TT  +L   F +YG +    +K   K P   P   YAFV F+  + A Q
Sbjct: 249 RTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIK---KQPGNNP---YAFVQFAELSSAIQ 302

Query: 109 ALEAPSHEKILRGR 122
           A      E + R R
Sbjct: 303 ARRKMDREYVGRNR 316


>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
          Length = 209

 Score = 32.7 bits (71), Expect = 0.83
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 47  PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
           P   L+V  L P TT  +L  +F+++G I SC +    K         YAF+ F    D 
Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESL---QYAFIEFEKDEDC 174

Query: 107 HQA 109
            +A
Sbjct: 175 ERA 177


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 32.7 bits (71), Expect = 0.83
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 37  SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
           S+P   E+ +    LY+  L   TT  +L  +  +YG I S    + DK  N      Y 
Sbjct: 88  SLPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAIL-DKDTNL--CKGYG 144

Query: 97  FVTFSNPADAHQALEA 112
           FV F +P  A +A+ A
Sbjct: 145 FVDFESPISAQKAVAA 160


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 32.7 bits (71), Expect = 0.83
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 48  IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
           I  LYV  L  K T  +L   F Q+G ++S          +  P    AFV F++ A A 
Sbjct: 303 ITTLYVGGLEGKVTEQDLRDHFYQFGELRSI---------SMVPRQNCAFVCFTSRAAAE 353

Query: 108 QALEAPSHEKILRGRNL 124
            A +   ++ IL+GR L
Sbjct: 354 AAADRSFNKLILKGRRL 370


>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 32.7 bits (71), Expect = 0.83
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           L+VTN+  +    +++ +F+ YG IK+  + + D+      I  YA V +    +A  AL
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNL-DRRTGF--IKGYALVEYETFKEAQSAL 351

Query: 111 EAPSHEKILRGRNL 124
           EA +  ++L G+N+
Sbjct: 352 EALNGAEML-GQNI 364


>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
          Length = 268

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSN 102
           ++++V     +TT +EL   F +YG++K   +     G +K     YAF+TF +
Sbjct: 8   KRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSK----GYAFITFES 57


>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
          Length = 607

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 418 TGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLC 458
           T  T+L  L ++  + IT++ L +I Q C KL+Y+ +M +C
Sbjct: 382 TCCTDLECLEIAECLRITHSSLNRIAQNCVKLKYI-DMQVC 421


>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
          Length = 145

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           R +Y+ +  P   ++ L  VF  YG I+   +     G +K     + +VT+ N   A +
Sbjct: 63  RTIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSK----GFGYVTYENAESAQR 118

Query: 109 ALEAPSHEKILRGRNLYTSP 128
           AL A +H  I+ G+ +   P
Sbjct: 119 AL-AGTH--IIDGKWVIAEP 135


>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           +L+V  L  +T   +L  VF  YG +  C LK             Y F+ + +P DA +A
Sbjct: 7   QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTA-----------YGFIEYEDPRDAEEA 55

Query: 110 LEAPSHEKILRGR 122
           +   ++ K+   R
Sbjct: 56  MRRENNRKLFGSR 68


>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1153

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 429 SRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIVEA 470
           S N    N   K + + C K   LN +D CGC+ +++  V++
Sbjct: 204 SINFSYCNITDKGVEELCLKCNLLNHIDFCGCNELTDNAVKS 245


>SB_29493| Best HMM Match : PH (HMM E-Value=0.48)
          Length = 1064

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 48  IRKLYVTNL--PPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPAD 105
           +   YVT    PP+ + ++  GV ++    K  WL++  +GP +    + +  + S    
Sbjct: 350 LENTYVTPAGPPPQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSRRGR 409

Query: 106 AHQALEAP 113
            H+ + AP
Sbjct: 410 HHEEVTAP 417



 Score = 31.1 bits (67), Expect = 2.5
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 57  PPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAP 113
           PP+ + ++  GV ++    K  WL++  +GP +    + +  + S     H+ + AP
Sbjct: 693 PPQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSRRGRHHEEVTAP 749


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           L V NL    T   L   F+Q+G ++   +    +G +K     +  V FS   +AH A+
Sbjct: 128 LRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKG----HGIVEFSRKNNAHNAM 183

Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRV 143
           +  S    L GR       + + Q  +D DG V
Sbjct: 184 QKISESLFLLGRTPRPISVEQYEQE-DDEDGLV 215


>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 37  SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
           ++PT+  D +P   L++TNLP +TT   L  +F Q+   K   L      P ++ I   +
Sbjct: 156 AIPTQQPD-LPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLV-----PGRSDI---S 206

Query: 97  FVTFSNPADAHQALEA 112
           FV F N   A  A +A
Sbjct: 207 FVEFENEVQAGTAKDA 222


>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
          Length = 380

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 251 LTTAVLRRVLARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHLAHV 310
           LT  +   VL R   SL++L +    S L D   H IAR C  L+ + LT    V  + +
Sbjct: 32  LTDDIFLGVLRRGTASLVSLDLSASASLLTDFAVHCIARHCRNLKFVDLTGVE-VSTSSL 90

Query: 311 DSCIEKITV 319
            S  +K T+
Sbjct: 91  KSLSQKCTL 99


>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 691

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQL 338
           +ND T  +IAR C KL +L L D   +    +    E I V +N               L
Sbjct: 82  VNDTTVRTIARRCKKLIQLSLKDRKFISFKAIR---ELIPVLSN---------------L 123

Query: 339 SSLSFYNC-YSLQGTVLSAAMDSLPNLTTLKLDLC 372
            SL   NC YS    +L    D   N+  LKL  C
Sbjct: 124 CSLDMTNCFYSCNDNLLQVIGDHCHNIQVLKLANC 158


>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
          Length = 201

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           KLYV NL      +EL   F ++G +   W+    + P     P +AFV + +  DA +A
Sbjct: 5   KLYVGNLGRNADSSELERAFEKFGRLSKVWVA---RNP-----PGFAFVEYEDYRDAEEA 56

Query: 110 L 110
           +
Sbjct: 57  V 57


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT-YAFVTFSNPADAHQA 109
           LYV N+P +    E    F  YG I +C L + DK    T +P    FV +   A+A  A
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRL-LRDK---STGLPKGCGFVLYDKKAEAQAA 190

Query: 110 LEAPS 114
           + + S
Sbjct: 191 ISSLS 195


>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
          Length = 260

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKG------------PNKTPIPTYA 96
           ++L+VTN+P +    +L  +F  +G+I    +   ++G            P    I  + 
Sbjct: 68  KRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFG 127

Query: 97  FVTFSNPADAHQALEAPSHEKILRGRNLYTS 127
           FVTF+  A+A++A E   +  I+ GR +  S
Sbjct: 128 FVTFNTAAEANKARE-KLNGTIVDGRKVEVS 157


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 3    NDEEDNERYFSPDLLHVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTR 62
            NDE  NE+  + +  H V +  + ++ L P+ +R + T  E  +P +K  +   P  + +
Sbjct: 1013 NDEGGNEKIIAQEKEHQV-LERLHSI-LTPFLLRRLKTDVELSLPPKKEVLVRAPLTSKQ 1070

Query: 63   TELY 66
            TE Y
Sbjct: 1071 TEFY 1074


>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 31  APYGIRSVPTK-TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK-GPN 88
           A +G R  PT  TE+     ++++  +P      EL  +  + G I+   L+M    G N
Sbjct: 136 ARFGERGFPTTWTEESGT--EVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLN 193

Query: 89  KTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
           K     +AF TF+    A+QA+   + + I  GR L
Sbjct: 194 KG----FAFCTFTEQTSAYQAITTLNDKDIRPGRRL 225


>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +YV NLP   T ++L+ VF +YG +    + + DK   ++     AF+ F +   A  A+
Sbjct: 12  VYVGNLPYSLTNSDLHKVFERYGKVVKVTI-LRDKETRES--RGVAFILFIDRQSAQNAV 68

Query: 111 EAPSHEKILRGRNL 124
            A  ++K + GR +
Sbjct: 69  -AAVNKKQMFGRTI 81


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 47  PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD-KGPNKTPIPTYAFVTFSNPAD 105
           P   L+V NLP + T T+   + + YG I+  +L   +  G +K     Y FV ++   +
Sbjct: 111 PESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSK----GYGFVEYATREN 166

Query: 106 AHQALE--APSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSR 151
           A QA +    +  K + GR L  + A+S      D   R  +  R  R
Sbjct: 167 AMQAKQQLLNTASKYIGGRILRVAFAESNLLTYADVHSRTLFVDRLPR 214


>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 39  PTKTEDGIP--IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
           P    + IP   RK++V  LPP     E++  F ++G +   W    +   +  P   YA
Sbjct: 332 PNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGSLTVDWPHKAE-SKSYFPPKGYA 390

Query: 97  FVTFSNPADAHQALEA 112
           F+ +       + + A
Sbjct: 391 FLLYLEEISVQKLISA 406


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 38  VPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAF 97
           +P + + G+  R L+V NL   T   ++   F  YG +    + + D+   K+       
Sbjct: 308 LPNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHI-LTDRETGKS--KGCGV 364

Query: 98  VTFSNPADAHQALEAPSH 115
           V   +P   ++ LE P H
Sbjct: 365 VKLRHPGTVNKILEEPVH 382


>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
          Length = 76

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIK 76
          ++ +YV N+P   + T+L  VF +YG I+
Sbjct: 1  VKSIYVRNVPLPMSETQLKAVFTKYGQIE 29


>SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
          Length = 923

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 410 SDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMD 456
           SD   ++L    +L +L +  N  IT+A +K + ++C +LE++  +D
Sbjct: 236 SDTAYKSLALCRKLHKLRIEGNNRITDASVKVLAKSCSQLEHVYMVD 282


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 129 ADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDEAGTS 169
           +D WH P +         PR S ++  SRSRS     +G+S
Sbjct: 173 SDEWHDPWQRTTSPKRRSPRRSSSSYSSRSRSSSSSSSGSS 213


>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 33  YGIRSVPTKTEDGIPI-RKLYVTNLPPKTTRTELYGVFAQYGL 74
           +G  S+PT T    PI RKL  TN+   T    L G+F ++G+
Sbjct: 435 FGRTSMPTSTTCKFPIVRKL--TNIQSSTVIAHLKGIFEEHGI 475


>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 743

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 277 SALNDRTAHSIARFCPKLEELKLTDSSLV----HLAHVDSC--IEKITVANNTHVTGLFL 330
           S L D     IA  CP L +L+L  ++ V      A +D C  +E++ ++ N  ++G   
Sbjct: 612 SQLTDAAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISGNDKISGNVS 671

Query: 331 TGAAPPQLSSLSFYNCYSL 349
           + A  P   S    N   L
Sbjct: 672 SKALKPLFESAVLPNLRQL 690


>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           K+Y+ +L    ++ E+   F  YG +K  W+    + P     P +AF  F +  DA  A
Sbjct: 33  KVYIGSLGDNASKREIENEFGYYGPLKDVWVA---RNP-----PGFAFCIFDDRRDAEDA 84

Query: 110 L 110
           +
Sbjct: 85  V 85


>SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 568

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 277 SALNDRTAHSIARFCPKLEELKLTDSSLV----HLAHVDSC--IEKITVANNTHVTGLFL 330
           S L D     IA  CP L +L+L  ++ V      A +D C  +E++ ++ N  ++G   
Sbjct: 43  SQLTDAAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISGNDKISGNVS 102

Query: 331 TGAAPPQLSSLSFYNCYSL 349
           + A  P   S    N   L
Sbjct: 103 SKALKPLFESAVLPNLRQL 121


>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 272 IDHHWSALNDRTAHSIARFCPKLEELK------LTDSSLVHLAHVDSCIEKITVANNTHV 325
           +D  W+ ++ ++   +A  C KL E++      LT+  L H       ++ I + + T V
Sbjct: 282 LDLSWTGIDSKSLTHLAVNCRKLTEVRLWSCNLLTEKGLCHFFSYCPTLKSIELTDLTSV 341

Query: 326 T--GLFLTGAAPPQLSSLSFYNC 346
           +   +       P + +L  YNC
Sbjct: 342 SDESIVCLAKCCPNIKNLLLYNC 364


>SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 423 LRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIV 468
           L+RL+L     +T+A LK++ + C  LE +N       +   EE+V
Sbjct: 137 LKRLDLKACFKVTDASLKEVARYCTNLECINLYCTATTENGFEELV 182


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           +L + NL    T   L   F+ +G +    +     G     +  + FV F+N  DA +A
Sbjct: 248 RLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMG-FGFVQFTNVFDAAKA 306

Query: 110 LEAPSHEKIL 119
           LE  + +KIL
Sbjct: 307 LEEMNAKKIL 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,798,462
Number of Sequences: 59808
Number of extensions: 636108
Number of successful extensions: 1302
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 65
length of query: 577
length of database: 16,821,457
effective HSP length: 86
effective length of query: 491
effective length of database: 11,677,969
effective search space: 5733882779
effective search space used: 5733882779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)

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