GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
         (577 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposa...    27   1.0  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          27   1.8  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   3.1  

>AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposase
           protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 221 VSKGWQIMVQEYLAGVRVLK-----TSWWQAEAARLTTAVLRRVLARV 263
           + K W IM +   A  +V+K     T+WW   A  +    +RR+++RV
Sbjct: 276 IEKYWAIMKRRLKAKGKVVKDINQMTTWWNKIAKTMDEEDVRRLMSRV 323


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 237 RVLKTSWWQAEAARLTTAVLRRVLARV 263
           +V+K  W+Q  AARL++  +++ LA +
Sbjct: 329 KVMKECWYQHPAARLSSLRIKKTLANL 355


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 73   GLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLYTSP 128
            GLI S W  M + G   TP  + A +  S+PA    + ++  H+     R++  SP
Sbjct: 1434 GLI-SRWRDMEEGGRQSTPPASPARLARSSPASPTPSKKSKRHQSASPIRHILNSP 1488


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,711
Number of Sequences: 2123
Number of extensions: 18679
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 577
length of database: 516,269
effective HSP length: 68
effective length of query: 509
effective length of database: 371,905
effective search space: 189299645
effective search space used: 189299645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)