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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
         (577 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical pr...    44   4e-04
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    39   0.008
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    39   0.011
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        39   0.011
U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    38   0.019
U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna b...    37   0.045
U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type ribon...    37   0.045
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    37   0.045
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    37   0.045
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    37   0.045
Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical pr...    36   0.059
AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative RNA-...    36   0.059
Z32683-13|CAA83626.1|  142|Caenorhabditis elegans Hypothetical p...    36   0.078
U41007-10|AAL32214.1|  118|Caenorhabditis elegans Sr protein (sp...    36   0.078
U41007-9|AAL32213.1|  153|Caenorhabditis elegans Sr protein (spl...    36   0.078
U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein (spl...    36   0.078
AF040642-5|AAN73870.2|  138|Caenorhabditis elegans Hypothetical ...    36   0.078
Z81084-7|CAB03111.1|  312|Caenorhabditis elegans Hypothetical pr...    35   0.14 
Z81037-10|CAB02754.1|  312|Caenorhabditis elegans Hypothetical p...    35   0.14 
Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical pr...    35   0.14 
X95609-1|CAA64867.1|  312|Caenorhabditis elegans mec-8 protein.        35   0.14 
X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.        35   0.14 
DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding p...    35   0.14 
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    34   0.24 
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    34   0.24 
U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    34   0.24 
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    34   0.24 
U39997-3|AAK68389.1|  498|Caenorhabditis elegans Human daz (dele...    34   0.32 
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    34   0.32 
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    34   0.32 
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    34   0.32 
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    34   0.32 
AB025253-1|BAA88577.1|  499|Caenorhabditis elegans DAZ-1 protein.      34   0.32 
AC084197-11|AAM44397.1|  305|Caenorhabditis elegans Homologous t...    33   0.42 
AC084197-10|AAY43984.1|  308|Caenorhabditis elegans Homologous t...    33   0.42 
L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical pr...    33   0.55 
L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical pr...    33   0.55 
U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical p...    32   0.96 
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    32   0.96 
Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical pr...    31   1.7  
U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle orienta...    31   1.7  
AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical ...    31   1.7  
AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical ...    31   1.7  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    31   1.7  
AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor pr...    31   1.7  
AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.      31   1.7  
AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural RNA-bi...    31   1.7  
U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein (spl...    31   2.2  
AF098501-6|AAL38960.1|  315|Caenorhabditis elegans Hypothetical ...    31   2.9  
AF098501-5|AAM69104.1|  335|Caenorhabditis elegans Hypothetical ...    31   2.9  
AF098501-4|AAL38959.1|  336|Caenorhabditis elegans Hypothetical ...    31   2.9  
AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical...    31   2.9  
Z83119-2|CAB05579.2|  608|Caenorhabditis elegans Hypothetical pr...    30   3.9  
U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical p...    30   3.9  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    30   3.9  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    30   3.9  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    30   3.9  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    30   3.9  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    30   3.9  
Z99279-4|CAB16494.1|  121|Caenorhabditis elegans Hypothetical pr...    30   5.1  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    30   5.1  
AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical ...    30   5.1  
AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    30   5.1  
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    30   5.1  
Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical pr...    29   6.8  
U28944-5|AAK68191.1|  408|Caenorhabditis elegans Hypothetical pr...    29   6.8  

>U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical
           protein EEED8.10a protein.
          Length = 738

 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 62/257 (24%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           RK+ V+N+  K T+++L   F+QYG I SC L   +K   KT +         N   A  
Sbjct: 112 RKIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEK---KTSVFGTLPKHSRNCGTATI 168

Query: 109 ALEAPSHEKILRGRNLYTSPAD-SWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDEAG 167
             +   H    R +N   +P +  ++  V      V  K R  +  V S       D+ G
Sbjct: 169 TFKKSEHAD--RAKN--ANPEELKFYDQVMVVSAYVS-KKRGGKGLVLS-------DDVG 216

Query: 168 TSTKMSTVATLXXXXXXXXXXVKSCTILDVLNRDCLTHILNYIPIRDIILSERVSKGW-- 225
            S + + ++             +S  + +V ++  L  +++++PI + I  ERV+K +  
Sbjct: 217 -SREDTPLSRASSTQSLASGSEQSFNLGNVPDK-ILRRVISFLPIHETIRLERVNKKFME 274

Query: 226 -QIMVQEYLAGVRVLKTSWWQAEAARLTTAVLRRVLARVGDSLLALHIDHHWSALNDRTA 284
             I   E +  + + + + +  +   + T+ L+ +L R G  L +L +      L+DR A
Sbjct: 275 ESIKSWELVNKIALARETVFNKQRP-MRTSHLKAILTRAGAHLRSLDVSGIVHLLDDRRA 333

Query: 285 -HSIARFCPKLEELKLT 300
              IA  CP L +L ++
Sbjct: 334 LKVIATCCPNLVDLDIS 350


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 25  ISNLELAPYG-IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG 83
           IS+ E A  G ++    K ++     KL V NLP + +  E+  +F  +G +K+  +++ 
Sbjct: 723 ISHRENADKGALKRKEVKQKEQGECTKLLVRNLPFEASVKEVETLFETFGAVKT--IRIP 780

Query: 84  DKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
            K   K     + FV F +  +AH+A ++  H   L GR L
Sbjct: 781 KKPGQKQQHRGFGFVDFISADEAHRAFDSLVHSTHLYGRRL 821



 Score = 32.3 bits (70), Expect = 0.96
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           +L V NLP   T  +L   F +YG I    LK   +G  +     +AFV F +   A  A
Sbjct: 4   RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFR----GFAFVGFLDEGSASNA 59

Query: 110 LEAPSHEKILRGRNL 124
           L A S++     + L
Sbjct: 60  L-AKSNQTFFNSKKL 73



 Score = 29.9 bits (64), Expect = 5.1
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 96  AFVTFSNPADAHQALEAPSHEKILRGRNLYT--SPAD---SWHQPVEDADGRVCWKPRFS 150
           A V   NP DA +A  A ++ +  R + LY   +P D   +   P ED    V  KP+ S
Sbjct: 522 ALVIMGNPVDAKKAFRALAYSRF-RSQPLYLEWAPYDVMGATAPPAEDKTAEVADKPKLS 580

Query: 151 RTNVRSRSRSKD 162
           +  +    + K+
Sbjct: 581 KREMTYEEKRKE 592


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           +K+YV NLP      E+  +F +YG IK   +K G +G      P +AFV F +  DA  
Sbjct: 9   QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG-RG------PAFAFVEFEDHRDAED 61

Query: 109 ALEA 112
           A+ A
Sbjct: 62  AVRA 65


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           +K+YV NLP      E+  +F +YG IK   +K G +G      P +AFV F +  DA  
Sbjct: 9   QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG-RG------PAFAFVEFEDHRDAED 61

Query: 109 ALEA 112
           A+ A
Sbjct: 62  AVRA 65


>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 37.9 bits (84), Expect = 0.019
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +YV N      +  L  VFA++G I SC + M  +G +K     + FV F+NP +A  A+
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 269

Query: 111 EAPSHEKILRGRNL 124
           +A  H+  + G +L
Sbjct: 270 QA-LHDSTIEGTDL 282



 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 41  KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
           +T     +  LYV +L P    + L+  F+  G + S  +++      +  +  YA+V F
Sbjct: 24  QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLS--IRVCRDNATRLSLG-YAYVNF 80

Query: 101 SNPADAHQALEAPSHEKI 118
             PADA +A++  + E +
Sbjct: 81  QQPADAERAMDTMNFEAL 98


>U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform a protein.
          Length = 584

 Score = 36.7 bits (81), Expect = 0.045
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 25  ISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD 84
           I  +E   + ++  P  TE+    RKL++  L  K     L  +FA++G I+ C +    
Sbjct: 119 IKVIEGMHHPVQMKPADTENRNE-RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ 177

Query: 85  KGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRG 121
            G ++      AFVTF+N + A  A +   H + + G
Sbjct: 178 DGKSR----GCAFVTFTNRSCAVVATKEMHHSQTMEG 210


>U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type
           ribonucleoprotein protein.
          Length = 584

 Score = 36.7 bits (81), Expect = 0.045
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 25  ISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD 84
           I  +E   + ++  P  TE+    RKL++  L  K     L  +FA++G I+ C +    
Sbjct: 119 IKVIEGMHHPVQMKPADTENRNE-RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ 177

Query: 85  KGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRG 121
            G ++      AFVTF+N + A  A +   H + + G
Sbjct: 178 DGKSR----GCAFVTFTNRSCAVVATKEMHHSQTMEG 210


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 36.7 bits (81), Expect = 0.045
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +YV N      +  L  +FA++G I SC + M  +G +K     + FV F+NP +A  A+
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 209

Query: 111 EAPSHEKILRGRNL 124
           +A  H+  + G +L
Sbjct: 210 QA-LHDSTIEGTDL 222



 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 41  KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
           +T     +  LYV +L P    + L+  F+  G + S  +++      +  +  YA+V F
Sbjct: 24  QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLS--IRVCRDNATRLSLG-YAYVNF 80

Query: 101 SNPADAHQALEAPSHEKI 118
             PADA +A++  + E +
Sbjct: 81  QQPADAERAMDTMNFEAL 98


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 36.7 bits (81), Expect = 0.045
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +YV N      +  L  +FA++G I SC + M  +G +K     + FV F+NP +A  A+
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 206

Query: 111 EAPSHEKILRGRNL 124
           +A  H+  + G +L
Sbjct: 207 QA-LHDSTIEGTDL 219


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 36.7 bits (81), Expect = 0.045
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +YV N      +  L  +FA++G I SC + M  +G +K     + FV F+NP +A  A+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 269

Query: 111 EAPSHEKILRGRNL 124
           +A  H+  + G +L
Sbjct: 270 QA-LHDSTIEGTDL 282



 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 41  KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
           +T     +  LYV +L P    + L+  F+  G + S  +++      +  +  YA+V F
Sbjct: 24  QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLS--IRVCRDNATRLSLG-YAYVNF 80

Query: 101 SNPADAHQALEAPSHEKI 118
             PADA +A++  + E +
Sbjct: 81  QQPADAERAMDTMNFEAL 98


>Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical
           protein C17D12.2 protein.
          Length = 514

 Score = 36.3 bits (80), Expect = 0.059
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 28  LELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGP 87
           +++ P    S P   +D +  +KL++  L  + +  E+  +FA +G +    +  G  G 
Sbjct: 103 MQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGA 162

Query: 88  NKTPIPTYAFVTFSNPADAHQALEA 112
           +K      AFV + +  DAH A+ A
Sbjct: 163 SK----GCAFVKYKHGLDAHMAISA 183


>AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative
           RNA-binding protein protein.
          Length = 514

 Score = 36.3 bits (80), Expect = 0.059
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 28  LELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGP 87
           +++ P    S P   +D +  +KL++  L  + +  E+  +FA +G +    +  G  G 
Sbjct: 103 MQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGA 162

Query: 88  NKTPIPTYAFVTFSNPADAHQALEA 112
           +K      AFV + +  DAH A+ A
Sbjct: 163 SK----GCAFVKYKHGLDAHMAISA 183


>Z32683-13|CAA83626.1|  142|Caenorhabditis elegans Hypothetical
           protein R07E5.14 protein.
          Length = 142

 Score = 35.9 bits (79), Expect = 0.078
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 22  IATISNLELAPYGIRSVPTKTEDGIPIRKL-----YVTNLPPKTTRTELYGVFAQYGLIK 76
           +A   N E   Y +    +    G P R +     +VTN+  + T  +++  F++YG IK
Sbjct: 23  LAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIK 82

Query: 77  SCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
           +  L + D+      +  YA V +    +A++A++  S++  L G+N+
Sbjct: 83  NIHLNL-DRRTGF--LKGYALVEYETQKEANEAID-QSNDTDLLGQNV 126


>U41007-10|AAL32214.1|  118|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform c protein.
          Length = 118

 Score = 35.9 bits (79), Expect = 0.078
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           K+YV  LP   T  EL  +F ++G I+  W+        + P P +AFV + +  DA  A
Sbjct: 4   KVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-------RRP-PGFAFVEYDDVRDAEDA 55

Query: 110 LEAPSHEKI 118
           + A    +I
Sbjct: 56  VRALDGSRI 64


>U41007-9|AAL32213.1|  153|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform b protein.
          Length = 153

 Score = 35.9 bits (79), Expect = 0.078
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           K+YV  LP   T  EL  +F ++G I+  W+        + P P +AFV + +  DA  A
Sbjct: 4   KVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-------RRP-PGFAFVEYDDVRDAEDA 55

Query: 110 LEAPSHEKI 118
           + A    +I
Sbjct: 56  VRALDGSRI 64


>U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform a protein.
          Length = 179

 Score = 35.9 bits (79), Expect = 0.078
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           K+YV  LP   T  EL  +F ++G I+  W+        + P P +AFV + +  DA  A
Sbjct: 4   KVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-------RRP-PGFAFVEYDDVRDAEDA 55

Query: 110 LEAPSHEKI 118
           + A    +I
Sbjct: 56  VRALDGSRI 64


>AF040642-5|AAN73870.2|  138|Caenorhabditis elegans Hypothetical
           protein C50D2.5 protein.
          Length = 138

 Score = 35.9 bits (79), Expect = 0.078
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           R LY+ NLP K T  E+Y +F ++G ++   +++G+    +      AFV + +  DA  
Sbjct: 19  RILYIKNLPYKITTEEMYEIFGKFGAVRQ--IRVGNTAETRGT----AFVVYEDIFDAKT 72

Query: 109 ALE 111
           A E
Sbjct: 73  ACE 75


>Z81084-7|CAB03111.1|  312|Caenorhabditis elegans Hypothetical
           protein F46A9.6 protein.
          Length = 312

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 35  IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           + SV ++  +   +R L+V+ LP      ELY +F      +   LKM  K  N  P   
Sbjct: 17  LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74

Query: 95  YAFVTFSNPADAHQA 109
             FVTF +  DA  A
Sbjct: 75  VGFVTFLSQQDAQDA 89


>Z81037-10|CAB02754.1|  312|Caenorhabditis elegans Hypothetical
           protein F46A9.6 protein.
          Length = 312

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 35  IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           + SV ++  +   +R L+V+ LP      ELY +F      +   LKM  K  N  P   
Sbjct: 17  LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74

Query: 95  YAFVTFSNPADAHQA 109
             FVTF +  DA  A
Sbjct: 75  VGFVTFLSQQDAQDA 89


>Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical
           protein R74.5a protein.
          Length = 404

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 36  RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
           RS  + + DG P R+L+V+N+P K    +L  +F + G +    +   ++G        +
Sbjct: 89  RSTSSSSTDG-P-RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSK-----GF 141

Query: 96  AFVTFSNPADAHQALEAPSHEKILRGRNL 124
            FVT  NP DA +A  A  +   + GR +
Sbjct: 142 GFVTMQNPDDADRA-RAEFNGTTIEGRRV 169


>X95609-1|CAA64867.1|  312|Caenorhabditis elegans mec-8 protein.
          Length = 312

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 35  IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           + SV ++  +   +R L+V+ LP      ELY +F      +   LKM  K  N  P   
Sbjct: 17  LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74

Query: 95  YAFVTFSNPADAHQA 109
             FVTF +  DA  A
Sbjct: 75  VGFVTFLSQQDAQDA 89


>X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.
          Length = 312

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 35  IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           + SV ++  +   +R L+V+ LP      ELY +F      +   LKM  K  N  P   
Sbjct: 17  LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74

Query: 95  YAFVTFSNPADAHQA 109
             FVTF +  DA  A
Sbjct: 75  VGFVTFLSQQDAQDA 89


>DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding
           protein ASD-1 protein.
          Length = 404

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 36  RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
           RS  + + DG P R+L+V+N+P K    +L  +F + G +    +   ++G        +
Sbjct: 89  RSTSSSSTDG-P-RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSK-----GF 141

Query: 96  AFVTFSNPADAHQALEAPSHEKILRGRNL 124
            FVT  NP DA +A  A  +   + GR +
Sbjct: 142 GFVTMQNPDDADRA-RAEFNGTTIEGRRV 169


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 34.3 bits (75), Expect = 0.24
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           LY+ +L P  +   L+  F+  G + S  +++     ++  +  YA+V F  PADA +AL
Sbjct: 59  LYIGDLHPDVSEAMLFEKFSMAGPVLS--IRVCRDNTSRLSLG-YAYVNFQQPADAERAL 115

Query: 111 EAPSHEKILRGR 122
           +  + E ++ GR
Sbjct: 116 DTMNFE-VIHGR 126



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +++ NL        +Y  F+ +G I SC +   D+G +K     Y FV F     A  A+
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSK----GYGFVHFETEHSAQTAI 202

Query: 111 E 111
           E
Sbjct: 203 E 203


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 34.3 bits (75), Expect = 0.24
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           LY+ +L P  +   L+  F+  G + S  +++     ++  +  YA+V F  PADA +AL
Sbjct: 59  LYIGDLHPDVSEAMLFEKFSMAGPVLS--IRVCRDNTSRLSLG-YAYVNFQQPADAERAL 115

Query: 111 EAPSHEKILRGR 122
           +  + E ++ GR
Sbjct: 116 DTMNFE-VIHGR 126



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +++ NL        +Y  F+ +G I SC +   D+G +K     Y FV F     A  A+
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSK----GYGFVHFETEHSAQTAI 202

Query: 111 E 111
           E
Sbjct: 203 E 203


>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 34.3 bits (75), Expect = 0.24
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 48  IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
           +  L + NL  +TT  +L   F +YG I    +   DK   ++    + FV F    DA 
Sbjct: 18  LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPR-DKYSRQS--KGFGFVRFYERRDAE 74

Query: 108 QALEAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRS 160
            AL+  +  K++ GR L  + A  + +P ++  GR     R    + R RSRS
Sbjct: 75  HALDR-TDGKLVDGRELRVTLA-KYDRPSDERGGRGGGGGRRRSRSPRRRSRS 125


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 34.3 bits (75), Expect = 0.24
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 39  PTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFV 98
           P  +ED  P R L+V  +  +T+ ++L   F  YG IK   +   + G  +     YAF+
Sbjct: 96  PRASED--PYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPR----GYAFI 149

Query: 99  TFSNPADAHQALEAPSHEKI 118
            +S+ A+ H A +     K+
Sbjct: 150 EYSDKAEMHTAYKKADGIKV 169


>U39997-3|AAK68389.1|  498|Caenorhabditis elegans Human daz (deleted
           in azoospermia)homolog protein 1 protein.
          Length = 498

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 28  LELAPYGIRS-VPTK-TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK 85
           ++L P G  + +P   T + IP R ++V   P  TT TEL   F ++  +K   +     
Sbjct: 44  IQLYPTGAAALIPAPPTYELIPNR-IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD 102

Query: 86  GPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLYTSPA 129
           G +K     Y F+TF     A +  +    +   R R L   PA
Sbjct: 103 GQSKG----YGFITFETEDQAEEIRKLTPKQLEFRSRKLNLGPA 142


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 45  GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
           G+P  KL + N+P     T++     + G +      M     N   I T+AFV FSN  
Sbjct: 133 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 192

Query: 105 DAHQ 108
            A Q
Sbjct: 193 TAEQ 196


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 45  GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
           G+P  KL + N+P     T++     + G +      M     N   I T+AFV FSN  
Sbjct: 161 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 220

Query: 105 DAHQ 108
            A Q
Sbjct: 221 TAEQ 224


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 45  GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
           G+P  KL + N+P     T++     + G +      M     N   I T+AFV FSN  
Sbjct: 219 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 278

Query: 105 DAHQ 108
            A Q
Sbjct: 279 TAEQ 282


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 45  GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
           G+P  KL + N+P     T++     + G +      M     N   I T+AFV FSN  
Sbjct: 220 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 279

Query: 105 DAHQ 108
            A Q
Sbjct: 280 TAEQ 283


>AB025253-1|BAA88577.1|  499|Caenorhabditis elegans DAZ-1 protein.
          Length = 499

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 28  LELAPYGIRS-VPTK-TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK 85
           ++L P G  + +P   T + IP R ++V   P  TT TEL   F ++  +K   +     
Sbjct: 45  IQLYPTGAAALIPAPPTYELIPNR-IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD 103

Query: 86  GPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLYTSPA 129
           G +K     Y F+TF     A +  +    +   R R L   PA
Sbjct: 104 GQSKG----YGFITFETEDQAEEIRKLTPKQLEFRSRKLNLGPA 143


>AC084197-11|AAM44397.1|  305|Caenorhabditis elegans Homologous to
           drosophila sqd (squid)protein protein 1, isoform a
           protein.
          Length = 305

 Score = 33.5 bits (73), Expect = 0.42
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           +K++V  + P+    +L   F QYG +    +K  D+   ++    +AFV F+       
Sbjct: 29  KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKY-DRTNGRS--RGFAFVEFTTGEGCKL 85

Query: 109 ALEAPSHEKILRGRNLYTSPADS 131
           AL A   E+ ++G+++   PA S
Sbjct: 86  ALAA--REQTIKGKSVEVKPAKS 106


>AC084197-10|AAY43984.1|  308|Caenorhabditis elegans Homologous to
           drosophila sqd (squid)protein protein 1, isoform b
           protein.
          Length = 308

 Score = 33.5 bits (73), Expect = 0.42
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           +K++V  + P+    +L   F QYG +    +K  D+   ++    +AFV F+       
Sbjct: 29  KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKY-DRTNGRS--RGFAFVEFTTGEGCKL 85

Query: 109 ALEAPSHEKILRGRNLYTSPADS 131
           AL A   E+ ++G+++   PA S
Sbjct: 86  ALAA--REQTIKGKSVEVKPAKS 106


>L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical
           protein C02F5.7a protein.
          Length = 461

 Score = 33.1 bits (72), Expect = 0.55
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 423 LRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIVE 469
           L  L+L R   +T+A  + +G+ CHKL YLN   L  C  +++  ++
Sbjct: 151 LEHLSLYRCKRVTDASCENLGRYCHKLNYLN---LENCSSITDRAMK 194



 Score = 32.7 bits (71), Expect = 0.73
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 410 SDEFCEALTGLT-ELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIV 468
           +D  CE L     +L  LNL     IT+  +K IG  C  L YLN   +  CD + +  V
Sbjct: 163 TDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLN---ISWCDAIQDRGV 219

Query: 469 E 469
           +
Sbjct: 220 Q 220


>L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical
           protein C02F5.7b protein.
          Length = 466

 Score = 33.1 bits (72), Expect = 0.55
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 423 LRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIVE 469
           L  L+L R   +T+A  + +G+ CHKL YLN   L  C  +++  ++
Sbjct: 151 LEHLSLYRCKRVTDASCENLGRYCHKLNYLN---LENCSSITDRAMK 194



 Score = 32.7 bits (71), Expect = 0.73
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 410 SDEFCEALTGLT-ELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIV 468
           +D  CE L     +L  LNL     IT+  +K IG  C  L YLN   +  CD + +  V
Sbjct: 163 TDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLN---ISWCDAIQDRGV 219

Query: 469 E 469
           +
Sbjct: 220 Q 220


>U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical
           protein F25B5.7d protein.
          Length = 374

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           +L+V NLP +   TEL  +F+ +G I  C+L    KG        +AF+     A A  A
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL--SGKG--------FAFLRLDTRAHAESA 166

Query: 110 LEAPSHEKILRGRNL 124
            EA    +I+ GR +
Sbjct: 167 KEA-IDGRIIHGRQV 180


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           +L+V NLP +   TEL  +F+ +G I  C+L    KG        +AF+     A A  A
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL--SGKG--------FAFLRLDTRAHAESA 166

Query: 110 LEAPSHEKILRGRNL 124
            EA    +I+ GR +
Sbjct: 167 KEA-IDGRIIHGRQV 180


>Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical
           protein R10E9.1 protein.
          Length = 320

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           K+++  L  +TT   L   F ++G +  C +    + P       + F+TF +P+   + 
Sbjct: 46  KMFIGGLSWQTTAENLRDYFGRFGEVNECMVM---RDPATKRARGFGFITFVDPSSVDKV 102

Query: 110 LEAPSHE 116
           L    HE
Sbjct: 103 LNNREHE 109


>U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle
           orientation defective protein4 protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 37  SVPTKTEDGIPI--RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           SV  KT +       ++YV+N+P      +L  +F  YG + S  +   D+G        
Sbjct: 37  SVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK-----G 91

Query: 95  YAFVTFSNPADAHQALEAPSHEKILRGR 122
           + FVT  +     +A  A  HE  ++GR
Sbjct: 92  FGFVTLDSIESCEKA-RAALHESHVQGR 118


>AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical
           protein F29C4.7b protein.
          Length = 423

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 41  KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT---YAF 97
           K +D    R L+V N+P      E+  VF ++G ++   +        KTPI T   YAF
Sbjct: 161 KQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI--------KTPINTDAAYAF 212

Query: 98  VTFSNPADAHQALEAPSHEK 117
           V F       QA++A + E+
Sbjct: 213 VMFQT---VDQAIQAKAEEQ 229


>AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical
           protein F29C4.7a protein.
          Length = 520

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 41  KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT---YAF 97
           K +D    R L+V N+P      E+  VF ++G ++   +        KTPI T   YAF
Sbjct: 161 KQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI--------KTPINTDAAYAF 212

Query: 98  VTFSNPADAHQALEAPSHEK 117
           V F       QA++A + E+
Sbjct: 213 VMFQT---VDQAIQAKAEEQ 229


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 41  KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT---YAF 97
           K +D    R L+V N+P      E+  VF ++G ++   +        KTPI T   YAF
Sbjct: 138 KQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI--------KTPINTDAAYAF 189

Query: 98  VTFSNPADAHQALEAPSHEK 117
           V F       QA++A + E+
Sbjct: 190 VMFQT---VDQAIQAKAEEQ 206


>AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor
           protein 12 protein.
          Length = 248

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           K++V  LP  T+   L+  F Q+G I+   + + D+   K+    Y FVT  + A A +A
Sbjct: 36  KIFVGGLPYHTSDKTLHEYFEQFGDIEEA-VVITDRNTQKS--RGYGFVTMKDRASAERA 92

Query: 110 LEAPSHEKILRGR 122
            + P+   I+ GR
Sbjct: 93  CKDPN--PIIDGR 103


>AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 37  SVPTKTEDGIPI--RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           SV  KT +       ++YV+N+P      +L  +F  YG + S  +   D+G        
Sbjct: 37  SVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK-----G 91

Query: 95  YAFVTFSNPADAHQALEAPSHEKILRGR 122
           + FVT  +     +A  A  HE  ++GR
Sbjct: 92  FGFVTLDSIESCEKA-RAALHESHVQGR 118


>AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural
           RNA-binding protein MSI-1 protein.
          Length = 320

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           K+++  L  +TT   L   F ++G +  C +    + P       + F+TF +P+   + 
Sbjct: 46  KMFIGGLSWQTTAENLRDYFGRFGEVNECMVM---RDPATKRARGFGFITFVDPSSVDKV 102

Query: 110 LEAPSHE 116
           L    HE
Sbjct: 103 LNNREHE 109


>U23484-3|AAK68298.1|  126|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform b protein.
          Length = 126

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 48  IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
           +  L + NL  +TT  +L   F +YG I    +   DK   ++    + FV F    DA 
Sbjct: 18  LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPR-DKYSRQS--KGFGFVRFYERRDAE 74

Query: 108 QALEAPSHEKILRGRNLYTSPADSWHQPVEDADGR 142
            AL+  +  K++ GR L  + A  + +P ++  GR
Sbjct: 75  HALDR-TDGKLVDGRELRVTLA-KYDRPSDERGGR 107


>AF098501-6|AAL38960.1|  315|Caenorhabditis elegans Hypothetical
           protein H28G03.1b protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 48  IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
           +RKL++  L   TT  +L   F+Q+G +      +  + PN      + FVTF++   A 
Sbjct: 48  LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDA---IVIRDPNTKHSRGFGFVTFASIFSAE 104

Query: 108 QALEAPSHE 116
            A+    H+
Sbjct: 105 SAMNDRPHK 113


>AF098501-5|AAM69104.1|  335|Caenorhabditis elegans Hypothetical
           protein H28G03.1c protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 48  IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
           +RKL++  L   TT  +L   F+Q+G +      +  + PN      + FVTF++   A 
Sbjct: 68  LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDA---IVIRDPNTKHSRGFGFVTFASIFSAE 124

Query: 108 QALEAPSHE 116
            A+    H+
Sbjct: 125 SAMNDRPHK 133


>AF098501-4|AAL38959.1|  336|Caenorhabditis elegans Hypothetical
           protein H28G03.1a protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 48  IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
           +RKL++  L   TT  +L   F+Q+G +      +  + PN      + FVTF++   A 
Sbjct: 69  LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDA---IVIRDPNTKHSRGFGFVTFASIFSAE 125

Query: 108 QALEAPSHE 116
            A+    H+
Sbjct: 126 SAMNDRPHK 134


>AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.33 protein.
          Length = 610

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 37  SVPTKTEDGIPIRKLYVT--NLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
           S+PTK   G P R  Y+    LP   T  +++  FA   + +  ++    + PN      
Sbjct: 50  SMPTKISSGEPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGR-PNGE---- 104

Query: 95  YAFVTFSNPADAHQALEAPSHEKILRGRNLYTSPADSWH---QPVEDADGRV 143
            A+V F N  +A +A+E    E   R   ++T  AD      +P  D++G V
Sbjct: 105 -AYVEFKNTEEAGKAMENDRKEISNRYIEVFTVEADEAEFEFRPDPDSNGEV 155


>Z83119-2|CAB05579.2|  608|Caenorhabditis elegans Hypothetical
           protein R05H10.2 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
           +L + NLP KT + +L  + +  G      L    K P KT    + F+ F   ADA + 
Sbjct: 96  RLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDP-KT-CAGFGFIQFVEKADAEKG 153

Query: 110 LEAPSHEKILRGRNL 124
            E  +  K+L GR++
Sbjct: 154 REFFNTNKVL-GRSV 167


>U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical
           protein F25B5.7b protein.
          Length = 165

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 50  KLYVTNLPPKTTRTELYGVFAQYGLIKSCWL 80
           +L+V NLP +   TEL  +F+ +G I  C+L
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL 147


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 18  HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
           H++   T+      P   R    ++E  +  ++LYV+ +    T   L   F +YG +  
Sbjct: 86  HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142

Query: 78  CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
             + + DK   K     + FVTF +     Q +   SH
Sbjct: 143 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 177


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 18  HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
           H++   T+      P   R    ++E  +  ++LYV+ +    T   L   F +YG +  
Sbjct: 48  HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 104

Query: 78  CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
             + + DK   K     + FVTF +     Q +   SH
Sbjct: 105 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 139


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 18  HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
           H++   T+      P   R    ++E  +  ++LYV+ +    T   L   F +YG +  
Sbjct: 48  HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 104

Query: 78  CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
             + + DK   K     + FVTF +     Q +   SH
Sbjct: 105 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 139


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 18  HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
           H++   T+      P   R    ++E  +  ++LYV+ +    T   L   F +YG +  
Sbjct: 86  HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142

Query: 78  CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
             + + DK   K     + FVTF +     Q +   SH
Sbjct: 143 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 177


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 18  HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
           H++   T+      P   R    ++E  +  ++LYV+ +    T   L   F +YG +  
Sbjct: 86  HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142

Query: 78  CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
             + + DK   K     + FVTF +     Q +   SH
Sbjct: 143 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 177


>Z99279-4|CAB16494.1|  121|Caenorhabditis elegans Hypothetical
           protein Y57G11A.5 protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 19/89 (21%)

Query: 41  KTEDGIPIRKLYVTNLPPKTTRTELYG-----------VFAQYGLIKSCWLKMGDKGPNK 89
           K +  +  R++YV N+P   T  EL             VF+  G IKS W+        K
Sbjct: 9   KRKRNVENRQVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMA-------K 61

Query: 90  TPIPTYAFVTFSNPADAHQALEAPSHEKI 118
            P P +AFVTF     A  A++  + +KI
Sbjct: 62  RP-PGFAFVTFKRTVHAFDAVKYLNGKKI 89


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
           protein C06B3.2 protein.
          Length = 665

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 335 PPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLCPAAMWK 378
           PP +  + FY  Y+L   +      SL N T L+++ C A+ W+
Sbjct: 364 PPYIIFIGFYAVYALY--IQGPLAASLFNFTVLQVEACKASWWR 405


>AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical
           protein Y46G5A.13 protein.
          Length = 434

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           R L+V NL P  T   L  +F Q G +     K+  +G N      YAFV FS+   A  
Sbjct: 40  RTLFVANLDPAITDEFLATLFNQIGAVMKA--KIIFEGLNDP----YAFVEFSDHNQATL 93

Query: 109 ALEAPSHEKILRGRNLYTSPADSWHQPVED 138
           AL++ +  ++L  + ++ + A    +P E+
Sbjct: 94  ALQSHNGRELLE-KEMHVTWAFEPREPGEN 122


>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 42  TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPI 92
           TEDG P + L +T+  P T   +++   A  GL K+   K  D GP   PI
Sbjct: 370 TEDGKPQKTLKITSYHPDTLFEQIWA--AMKGLNKTNATKNEDSGPWTPPI 418


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 42  TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPI 92
           TEDG P + L +T+  P T   +++   A  GL K+   K  D GP   PI
Sbjct: 370 TEDGKPQKTLKITSYHPDTLFEQIWA--AMKGLNKTNATKNEDSGPWTPPI 418


>Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical
           protein R06C1.4 protein.
          Length = 84

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 51  LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
           +YV N+P + T  E+   FA  G + +  + + D+   +     +AFV FS  A A +A+
Sbjct: 8   VYVGNVPYQGTEEEIGNYFAAVGHVNNVRI-VYDRETGRP--RGFAFVEFSEEAGAQRAV 64

Query: 111 EAPSHEKILRGRNLYTSPAD 130
           E   +     GRNL  + A+
Sbjct: 65  E-QLNGVAFNGRNLRVNYAN 83


>U28944-5|AAK68191.1|  408|Caenorhabditis elegans Hypothetical
           protein C18A3.5a protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 49  RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
           R LYV NL    T   +  +F Q G +     K+   G N      YAFV FS+   A Q
Sbjct: 46  RTLYVGNLDSTVTEDFIATLFNQIGSVTKT--KVIFDGSNDP----YAFVEFSDHGQASQ 99

Query: 109 ALEAPSHEKIL 119
           AL+  +   +L
Sbjct: 100 ALQTMNKRLLL 110


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,028
Number of Sequences: 27539
Number of extensions: 467116
Number of successful extensions: 1219
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 110
length of query: 577
length of database: 12,573,161
effective HSP length: 85
effective length of query: 492
effective length of database: 10,232,346
effective search space: 5034314232
effective search space used: 5034314232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)

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