Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
(577 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 44 4e-04
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 39 0.008
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 39 0.011
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 39 0.011
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.019
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 37 0.045
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 37 0.045
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 37 0.045
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 37 0.045
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 37 0.045
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.059
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.059
Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 36 0.078
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 36 0.078
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 36 0.078
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 36 0.078
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 36 0.078
Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical pr... 35 0.14
Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical p... 35 0.14
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 35 0.14
X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein. 35 0.14
X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein. 35 0.14
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 35 0.14
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.24
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.24
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 34 0.24
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 34 0.24
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 34 0.32
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 34 0.32
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 34 0.32
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 34 0.32
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 34 0.32
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 34 0.32
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 33 0.42
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 33 0.42
L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical pr... 33 0.55
L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical pr... 33 0.55
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 32 0.96
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 32 0.96
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 31 1.7
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 1.7
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 31 1.7
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 31 1.7
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 31 1.7
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 31 1.7
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 1.7
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 31 1.7
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 31 2.2
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 31 2.9
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 31 2.9
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 31 2.9
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 31 2.9
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 30 3.9
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 30 3.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 3.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 3.9
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 3.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 3.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 3.9
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 30 5.1
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 30 5.1
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 30 5.1
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 30 5.1
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 30 5.1
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 29 6.8
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 6.8
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 43.6 bits (98), Expect = 4e-04
Identities = 62/257 (24%), Positives = 113/257 (43%), Gaps = 23/257 (8%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RK+ V+N+ K T+++L F+QYG I SC L +K KT + N A
Sbjct: 112 RKIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEK---KTSVFGTLPKHSRNCGTATI 168
Query: 109 ALEAPSHEKILRGRNLYTSPAD-SWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDEAG 167
+ H R +N +P + ++ V V K R + V S D+ G
Sbjct: 169 TFKKSEHAD--RAKN--ANPEELKFYDQVMVVSAYVS-KKRGGKGLVLS-------DDVG 216
Query: 168 TSTKMSTVATLXXXXXXXXXXVKSCTILDVLNRDCLTHILNYIPIRDIILSERVSKGW-- 225
S + + ++ +S + +V ++ L +++++PI + I ERV+K +
Sbjct: 217 -SREDTPLSRASSTQSLASGSEQSFNLGNVPDK-ILRRVISFLPIHETIRLERVNKKFME 274
Query: 226 -QIMVQEYLAGVRVLKTSWWQAEAARLTTAVLRRVLARVGDSLLALHIDHHWSALNDRTA 284
I E + + + + + + + + T+ L+ +L R G L +L + L+DR A
Sbjct: 275 ESIKSWELVNKIALARETVFNKQRP-MRTSHLKAILTRAGAHLRSLDVSGIVHLLDDRRA 333
Query: 285 -HSIARFCPKLEELKLT 300
IA CP L +L ++
Sbjct: 334 LKVIATCCPNLVDLDIS 350
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.1 bits (87), Expect = 0.008
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 25 ISNLELAPYG-IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG 83
IS+ E A G ++ K ++ KL V NLP + + E+ +F +G +K+ +++
Sbjct: 723 ISHRENADKGALKRKEVKQKEQGECTKLLVRNLPFEASVKEVETLFETFGAVKT--IRIP 780
Query: 84 DKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
K K + FV F + +AH+A ++ H L GR L
Sbjct: 781 KKPGQKQQHRGFGFVDFISADEAHRAFDSLVHSTHLYGRRL 821
Score = 32.3 bits (70), Expect = 0.96
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+L V NLP T +L F +YG I LK +G + +AFV F + A A
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFR----GFAFVGFLDEGSASNA 59
Query: 110 LEAPSHEKILRGRNL 124
L A S++ + L
Sbjct: 60 L-AKSNQTFFNSKKL 73
Score = 29.9 bits (64), Expect = 5.1
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 96 AFVTFSNPADAHQALEAPSHEKILRGRNLYT--SPAD---SWHQPVEDADGRVCWKPRFS 150
A V NP DA +A A ++ + R + LY +P D + P ED V KP+ S
Sbjct: 522 ALVIMGNPVDAKKAFRALAYSRF-RSQPLYLEWAPYDVMGATAPPAEDKTAEVADKPKLS 580
Query: 151 RTNVRSRSRSKD 162
+ + + K+
Sbjct: 581 KREMTYEEKRKE 592
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 38.7 bits (86), Expect = 0.011
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
+K+YV NLP E+ +F +YG IK +K G +G P +AFV F + DA
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG-RG------PAFAFVEFEDHRDAED 61
Query: 109 ALEA 112
A+ A
Sbjct: 62 AVRA 65
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 38.7 bits (86), Expect = 0.011
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
+K+YV NLP E+ +F +YG IK +K G +G P +AFV F + DA
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG-RG------PAFAFVEFEDHRDAED 61
Query: 109 ALEA 112
A+ A
Sbjct: 62 AVRA 65
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.019
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV N + L VFA++G I SC + M +G +K + FV F+NP +A A+
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 269
Query: 111 EAPSHEKILRGRNL 124
+A H+ + G +L
Sbjct: 270 QA-LHDSTIEGTDL 282
Score = 31.9 bits (69), Expect = 1.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
+T + LYV +L P + L+ F+ G + S +++ + + YA+V F
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLS--IRVCRDNATRLSLG-YAYVNF 80
Query: 101 SNPADAHQALEAPSHEKI 118
PADA +A++ + E +
Sbjct: 81 QQPADAERAMDTMNFEAL 98
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 36.7 bits (81), Expect = 0.045
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 25 ISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD 84
I +E + ++ P TE+ RKL++ L K L +FA++G I+ C +
Sbjct: 119 IKVIEGMHHPVQMKPADTENRNE-RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ 177
Query: 85 KGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRG 121
G ++ AFVTF+N + A A + H + + G
Sbjct: 178 DGKSR----GCAFVTFTNRSCAVVATKEMHHSQTMEG 210
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 36.7 bits (81), Expect = 0.045
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 25 ISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGD 84
I +E + ++ P TE+ RKL++ L K L +FA++G I+ C +
Sbjct: 119 IKVIEGMHHPVQMKPADTENRNE-RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ 177
Query: 85 KGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRG 121
G ++ AFVTF+N + A A + H + + G
Sbjct: 178 DGKSR----GCAFVTFTNRSCAVVATKEMHHSQTMEG 210
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 36.7 bits (81), Expect = 0.045
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV N + L +FA++G I SC + M +G +K + FV F+NP +A A+
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 209
Query: 111 EAPSHEKILRGRNL 124
+A H+ + G +L
Sbjct: 210 QA-LHDSTIEGTDL 222
Score = 31.9 bits (69), Expect = 1.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
+T + LYV +L P + L+ F+ G + S +++ + + YA+V F
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLS--IRVCRDNATRLSLG-YAYVNF 80
Query: 101 SNPADAHQALEAPSHEKI 118
PADA +A++ + E +
Sbjct: 81 QQPADAERAMDTMNFEAL 98
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 36.7 bits (81), Expect = 0.045
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV N + L +FA++G I SC + M +G +K + FV F+NP +A A+
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 206
Query: 111 EAPSHEKILRGRNL 124
+A H+ + G +L
Sbjct: 207 QA-LHDSTIEGTDL 219
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 36.7 bits (81), Expect = 0.045
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV N + L +FA++G I SC + M +G +K + FV F+NP +A A+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSK----GFGFVAFANPEEAETAV 269
Query: 111 EAPSHEKILRGRNL 124
+A H+ + G +L
Sbjct: 270 QA-LHDSTIEGTDL 282
Score = 31.9 bits (69), Expect = 1.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
+T + LYV +L P + L+ F+ G + S +++ + + YA+V F
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLS--IRVCRDNATRLSLG-YAYVNF 80
Query: 101 SNPADAHQALEAPSHEKI 118
PADA +A++ + E +
Sbjct: 81 QQPADAERAMDTMNFEAL 98
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 36.3 bits (80), Expect = 0.059
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 28 LELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGP 87
+++ P S P +D + +KL++ L + + E+ +FA +G + + G G
Sbjct: 103 MQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGA 162
Query: 88 NKTPIPTYAFVTFSNPADAHQALEA 112
+K AFV + + DAH A+ A
Sbjct: 163 SK----GCAFVKYKHGLDAHMAISA 183
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 36.3 bits (80), Expect = 0.059
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 28 LELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGP 87
+++ P S P +D + +KL++ L + + E+ +FA +G + + G G
Sbjct: 103 MQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGA 162
Query: 88 NKTPIPTYAFVTFSNPADAHQALEA 112
+K AFV + + DAH A+ A
Sbjct: 163 SK----GCAFVKYKHGLDAHMAISA 183
>Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 35.9 bits (79), Expect = 0.078
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 22 IATISNLELAPYGIRSVPTKTEDGIPIRKL-----YVTNLPPKTTRTELYGVFAQYGLIK 76
+A N E Y + + G P R + +VTN+ + T +++ F++YG IK
Sbjct: 23 LAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIK 82
Query: 77 SCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNL 124
+ L + D+ + YA V + +A++A++ S++ L G+N+
Sbjct: 83 NIHLNL-DRRTGF--LKGYALVEYETQKEANEAID-QSNDTDLLGQNV 126
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 35.9 bits (79), Expect = 0.078
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+YV LP T EL +F ++G I+ W+ + P P +AFV + + DA A
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-------RRP-PGFAFVEYDDVRDAEDA 55
Query: 110 LEAPSHEKI 118
+ A +I
Sbjct: 56 VRALDGSRI 64
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 35.9 bits (79), Expect = 0.078
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+YV LP T EL +F ++G I+ W+ + P P +AFV + + DA A
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-------RRP-PGFAFVEYDDVRDAEDA 55
Query: 110 LEAPSHEKI 118
+ A +I
Sbjct: 56 VRALDGSRI 64
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 35.9 bits (79), Expect = 0.078
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+YV LP T EL +F ++G I+ W+ + P P +AFV + + DA A
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-------RRP-PGFAFVEYDDVRDAEDA 55
Query: 110 LEAPSHEKI 118
+ A +I
Sbjct: 56 VRALDGSRI 64
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 35.9 bits (79), Expect = 0.078
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R LY+ NLP K T E+Y +F ++G ++ +++G+ + AFV + + DA
Sbjct: 19 RILYIKNLPYKITTEEMYEIFGKFGAVRQ--IRVGNTAETRGT----AFVVYEDIFDAKT 72
Query: 109 ALE 111
A E
Sbjct: 73 ACE 75
>Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.14
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
+ SV ++ + +R L+V+ LP ELY +F + LKM K N P
Sbjct: 17 LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74
Query: 95 YAFVTFSNPADAHQA 109
FVTF + DA A
Sbjct: 75 VGFVTFLSQQDAQDA 89
>Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.14
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
+ SV ++ + +R L+V+ LP ELY +F + LKM K N P
Sbjct: 17 LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74
Query: 95 YAFVTFSNPADAHQA 109
FVTF + DA A
Sbjct: 75 VGFVTFLSQQDAQDA 89
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 35.1 bits (77), Expect = 0.14
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 36 RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
RS + + DG P R+L+V+N+P K +L +F + G + + ++G +
Sbjct: 89 RSTSSSSTDG-P-RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSK-----GF 141
Query: 96 AFVTFSNPADAHQALEAPSHEKILRGRNL 124
FVT NP DA +A A + + GR +
Sbjct: 142 GFVTMQNPDDADRA-RAEFNGTTIEGRRV 169
>X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.14
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
+ SV ++ + +R L+V+ LP ELY +F + LKM K N P
Sbjct: 17 LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74
Query: 95 YAFVTFSNPADAHQA 109
FVTF + DA A
Sbjct: 75 VGFVTFLSQQDAQDA 89
>X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.14
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
+ SV ++ + +R L+V+ LP ELY +F + LKM K N P
Sbjct: 17 LNSVSSEATNPSQVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSK--NGKPTSP 74
Query: 95 YAFVTFSNPADAHQA 109
FVTF + DA A
Sbjct: 75 VGFVTFLSQQDAQDA 89
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 35.1 bits (77), Expect = 0.14
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 36 RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
RS + + DG P R+L+V+N+P K +L +F + G + + ++G +
Sbjct: 89 RSTSSSSTDG-P-RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSK-----GF 141
Query: 96 AFVTFSNPADAHQALEAPSHEKILRGRNL 124
FVT NP DA +A A + + GR +
Sbjct: 142 GFVTMQNPDDADRA-RAEFNGTTIEGRRV 169
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LY+ +L P + L+ F+ G + S +++ ++ + YA+V F PADA +AL
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLS--IRVCRDNTSRLSLG-YAYVNFQQPADAERAL 115
Query: 111 EAPSHEKILRGR 122
+ + E ++ GR
Sbjct: 116 DTMNFE-VIHGR 126
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+++ NL +Y F+ +G I SC + D+G +K Y FV F A A+
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSK----GYGFVHFETEHSAQTAI 202
Query: 111 E 111
E
Sbjct: 203 E 203
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LY+ +L P + L+ F+ G + S +++ ++ + YA+V F PADA +AL
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLS--IRVCRDNTSRLSLG-YAYVNFQQPADAERAL 115
Query: 111 EAPSHEKILRGR 122
+ + E ++ GR
Sbjct: 116 DTMNFE-VIHGR 126
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+++ NL +Y F+ +G I SC + D+G +K Y FV F A A+
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSK----GYGFVHFETEHSAQTAI 202
Query: 111 E 111
E
Sbjct: 203 E 203
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 34.3 bits (75), Expect = 0.24
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+ L + NL +TT +L F +YG I + DK ++ + FV F DA
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPR-DKYSRQS--KGFGFVRFYERRDAE 74
Query: 108 QALEAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRS 160
AL+ + K++ GR L + A + +P ++ GR R + R RSRS
Sbjct: 75 HALDR-TDGKLVDGRELRVTLA-KYDRPSDERGGRGGGGGRRRSRSPRRRSRS 125
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 34.3 bits (75), Expect = 0.24
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 39 PTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFV 98
P +ED P R L+V + +T+ ++L F YG IK + + G + YAF+
Sbjct: 96 PRASED--PYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPR----GYAFI 149
Query: 99 TFSNPADAHQALEAPSHEKI 118
+S+ A+ H A + K+
Sbjct: 150 EYSDKAEMHTAYKKADGIKV 169
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.32
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 28 LELAPYGIRS-VPTK-TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK 85
++L P G + +P T + IP R ++V P TT TEL F ++ +K +
Sbjct: 44 IQLYPTGAAALIPAPPTYELIPNR-IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD 102
Query: 86 GPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLYTSPA 129
G +K Y F+TF A + + + R R L PA
Sbjct: 103 GQSKG----YGFITFETEDQAEEIRKLTPKQLEFRSRKLNLGPA 142
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 33.9 bits (74), Expect = 0.32
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 45 GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
G+P KL + N+P T++ + G + M N I T+AFV FSN
Sbjct: 133 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 192
Query: 105 DAHQ 108
A Q
Sbjct: 193 TAEQ 196
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 33.9 bits (74), Expect = 0.32
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 45 GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
G+P KL + N+P T++ + G + M N I T+AFV FSN
Sbjct: 161 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 220
Query: 105 DAHQ 108
A Q
Sbjct: 221 TAEQ 224
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 33.9 bits (74), Expect = 0.32
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 45 GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
G+P KL + N+P T++ + G + M N I T+AFV FSN
Sbjct: 219 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 278
Query: 105 DAHQ 108
A Q
Sbjct: 279 TAEQ 282
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 33.9 bits (74), Expect = 0.32
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 45 GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
G+P KL + N+P T++ + G + M N I T+AFV FSN
Sbjct: 220 GVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRE 279
Query: 105 DAHQ 108
A Q
Sbjct: 280 TAEQ 283
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 33.9 bits (74), Expect = 0.32
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 28 LELAPYGIRS-VPTK-TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK 85
++L P G + +P T + IP R ++V P TT TEL F ++ +K +
Sbjct: 45 IQLYPTGAAALIPAPPTYELIPNR-IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD 103
Query: 86 GPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLYTSPA 129
G +K Y F+TF A + + + R R L PA
Sbjct: 104 GQSKG----YGFITFETEDQAEEIRKLTPKQLEFRSRKLNLGPA 143
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.42
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
+K++V + P+ +L F QYG + +K D+ ++ +AFV F+
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKY-DRTNGRS--RGFAFVEFTTGEGCKL 85
Query: 109 ALEAPSHEKILRGRNLYTSPADS 131
AL A E+ ++G+++ PA S
Sbjct: 86 ALAA--REQTIKGKSVEVKPAKS 106
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.5 bits (73), Expect = 0.42
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
+K++V + P+ +L F QYG + +K D+ ++ +AFV F+
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKY-DRTNGRS--RGFAFVEFTTGEGCKL 85
Query: 109 ALEAPSHEKILRGRNLYTSPADS 131
AL A E+ ++G+++ PA S
Sbjct: 86 ALAA--REQTIKGKSVEVKPAKS 106
>L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical
protein C02F5.7a protein.
Length = 461
Score = 33.1 bits (72), Expect = 0.55
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 423 LRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIVE 469
L L+L R +T+A + +G+ CHKL YLN L C +++ ++
Sbjct: 151 LEHLSLYRCKRVTDASCENLGRYCHKLNYLN---LENCSSITDRAMK 194
Score = 32.7 bits (71), Expect = 0.73
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 410 SDEFCEALTGLT-ELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIV 468
+D CE L +L LNL IT+ +K IG C L YLN + CD + + V
Sbjct: 163 TDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLN---ISWCDAIQDRGV 219
Query: 469 E 469
+
Sbjct: 220 Q 220
>L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical
protein C02F5.7b protein.
Length = 466
Score = 33.1 bits (72), Expect = 0.55
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 423 LRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIVE 469
L L+L R +T+A + +G+ CHKL YLN L C +++ ++
Sbjct: 151 LEHLSLYRCKRVTDASCENLGRYCHKLNYLN---LENCSSITDRAMK 194
Score = 32.7 bits (71), Expect = 0.73
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 410 SDEFCEALTGLT-ELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGVSEEIV 468
+D CE L +L LNL IT+ +K IG C L YLN + CD + + V
Sbjct: 163 TDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLN---ISWCDAIQDRGV 219
Query: 469 E 469
+
Sbjct: 220 Q 220
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 32.3 bits (70), Expect = 0.96
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+L+V NLP + TEL +F+ +G I C+L KG +AF+ A A A
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL--SGKG--------FAFLRLDTRAHAESA 166
Query: 110 LEAPSHEKILRGRNL 124
EA +I+ GR +
Sbjct: 167 KEA-IDGRIIHGRQV 180
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 32.3 bits (70), Expect = 0.96
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+L+V NLP + TEL +F+ +G I C+L KG +AF+ A A A
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL--SGKG--------FAFLRLDTRAHAESA 166
Query: 110 LEAPSHEKILRGRNL 124
EA +I+ GR +
Sbjct: 167 KEA-IDGRIIHGRQV 180
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+++ L +TT L F ++G + C + + P + F+TF +P+ +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVM---RDPATKRARGFGFITFVDPSSVDKV 102
Query: 110 LEAPSHE 116
L HE
Sbjct: 103 LNNREHE 109
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 31.5 bits (68), Expect = 1.7
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 37 SVPTKTEDGIPI--RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
SV KT + ++YV+N+P +L +F YG + S + D+G
Sbjct: 37 SVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK-----G 91
Query: 95 YAFVTFSNPADAHQALEAPSHEKILRGR 122
+ FVT + +A A HE ++GR
Sbjct: 92 FGFVTLDSIESCEKA-RAALHESHVQGR 118
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 31.5 bits (68), Expect = 1.7
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT---YAF 97
K +D R L+V N+P E+ VF ++G ++ + KTPI T YAF
Sbjct: 161 KQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI--------KTPINTDAAYAF 212
Query: 98 VTFSNPADAHQALEAPSHEK 117
V F QA++A + E+
Sbjct: 213 VMFQT---VDQAIQAKAEEQ 229
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 31.5 bits (68), Expect = 1.7
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT---YAF 97
K +D R L+V N+P E+ VF ++G ++ + KTPI T YAF
Sbjct: 161 KQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI--------KTPINTDAAYAF 212
Query: 98 VTFSNPADAHQALEAPSHEK 117
V F QA++A + E+
Sbjct: 213 VMFQT---VDQAIQAKAEEQ 229
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 31.5 bits (68), Expect = 1.7
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT---YAF 97
K +D R L+V N+P E+ VF ++G ++ + KTPI T YAF
Sbjct: 138 KQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI--------KTPINTDAAYAF 189
Query: 98 VTFSNPADAHQALEAPSHEK 117
V F QA++A + E+
Sbjct: 190 VMFQT---VDQAIQAKAEEQ 206
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 31.5 bits (68), Expect = 1.7
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K++V LP T+ L+ F Q+G I+ + + D+ K+ Y FVT + A A +A
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEA-VVITDRNTQKS--RGYGFVTMKDRASAERA 92
Query: 110 LEAPSHEKILRGR 122
+ P+ I+ GR
Sbjct: 93 CKDPN--PIIDGR 103
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 31.5 bits (68), Expect = 1.7
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 37 SVPTKTEDGIPI--RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
SV KT + ++YV+N+P +L +F YG + S + D+G
Sbjct: 37 SVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK-----G 91
Query: 95 YAFVTFSNPADAHQALEAPSHEKILRGR 122
+ FVT + +A A HE ++GR
Sbjct: 92 FGFVTLDSIESCEKA-RAALHESHVQGR 118
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+++ L +TT L F ++G + C + + P + F+TF +P+ +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVM---RDPATKRARGFGFITFVDPSSVDKV 102
Query: 110 LEAPSHE 116
L HE
Sbjct: 103 LNNREHE 109
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.1 bits (67), Expect = 2.2
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+ L + NL +TT +L F +YG I + DK ++ + FV F DA
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPR-DKYSRQS--KGFGFVRFYERRDAE 74
Query: 108 QALEAPSHEKILRGRNLYTSPADSWHQPVEDADGR 142
AL+ + K++ GR L + A + +P ++ GR
Sbjct: 75 HALDR-TDGKLVDGRELRVTLA-KYDRPSDERGGR 107
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+RKL++ L TT +L F+Q+G + + + PN + FVTF++ A
Sbjct: 48 LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDA---IVIRDPNTKHSRGFGFVTFASIFSAE 104
Query: 108 QALEAPSHE 116
A+ H+
Sbjct: 105 SAMNDRPHK 113
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+RKL++ L TT +L F+Q+G + + + PN + FVTF++ A
Sbjct: 68 LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDA---IVIRDPNTKHSRGFGFVTFASIFSAE 124
Query: 108 QALEAPSHE 116
A+ H+
Sbjct: 125 SAMNDRPHK 133
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+RKL++ L TT +L F+Q+G + + + PN + FVTF++ A
Sbjct: 69 LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDA---IVIRDPNTKHSRGFGFVTFASIFSAE 125
Query: 108 QALEAPSHE 116
A+ H+
Sbjct: 126 SAMNDRPHK 134
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 30.7 bits (66), Expect = 2.9
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 37 SVPTKTEDGIPIRKLYVT--NLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
S+PTK G P R Y+ LP T +++ FA + + ++ + PN
Sbjct: 50 SMPTKISSGEPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGR-PNGE---- 104
Query: 95 YAFVTFSNPADAHQALEAPSHEKILRGRNLYTSPADSWH---QPVEDADGRV 143
A+V F N +A +A+E E R ++T AD +P D++G V
Sbjct: 105 -AYVEFKNTEEAGKAMENDRKEISNRYIEVFTVEADEAEFEFRPDPDSNGEV 155
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+L + NLP KT + +L + + G L K P KT + F+ F ADA +
Sbjct: 96 RLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDP-KT-CAGFGFIQFVEKADAEKG 153
Query: 110 LEAPSHEKILRGRNL 124
E + K+L GR++
Sbjct: 154 REFFNTNKVL-GRSV 167
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWL 80
+L+V NLP + TEL +F+ +G I C+L
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYL 147
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
H++ T+ P R ++E + ++LYV+ + T L F +YG +
Sbjct: 86 HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
+ + DK K + FVTF + Q + SH
Sbjct: 143 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 177
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
H++ T+ P R ++E + ++LYV+ + T L F +YG +
Sbjct: 48 HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 104
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
+ + DK K + FVTF + Q + SH
Sbjct: 105 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 139
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
H++ T+ P R ++E + ++LYV+ + T L F +YG +
Sbjct: 48 HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 104
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
+ + DK K + FVTF + Q + SH
Sbjct: 105 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 139
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
H++ T+ P R ++E + ++LYV+ + T L F +YG +
Sbjct: 86 HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
+ + DK K + FVTF + Q + SH
Sbjct: 143 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 177
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 18 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKS 77
H++ T+ P R ++E + ++LYV+ + T L F +YG +
Sbjct: 86 HIIDGKTVDPKRAVP---RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 78 CWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSH 115
+ + DK K + FVTF + Q + SH
Sbjct: 143 SEIIL-DKATQKP--RGFGFVTFDDHDSVDQCVLQKSH 177
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 29.9 bits (64), Expect = 5.1
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYG-----------VFAQYGLIKSCWLKMGDKGPNK 89
K + + R++YV N+P T EL VF+ G IKS W+ K
Sbjct: 9 KRKRNVENRQVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMA-------K 61
Query: 90 TPIPTYAFVTFSNPADAHQALEAPSHEKI 118
P P +AFVTF A A++ + +KI
Sbjct: 62 RP-PGFAFVTFKRTVHAFDAVKYLNGKKI 89
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 335 PPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLCPAAMWK 378
PP + + FY Y+L + SL N T L+++ C A+ W+
Sbjct: 364 PPYIIFIGFYAVYALY--IQGPLAASLFNFTVLQVEACKASWWR 405
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 29.9 bits (64), Expect = 5.1
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R L+V NL P T L +F Q G + K+ +G N YAFV FS+ A
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKA--KIIFEGLNDP----YAFVEFSDHNQATL 93
Query: 109 ALEAPSHEKILRGRNLYTSPADSWHQPVED 138
AL++ + ++L + ++ + A +P E+
Sbjct: 94 ALQSHNGRELLE-KEMHVTWAFEPREPGEN 122
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 42 TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPI 92
TEDG P + L +T+ P T +++ A GL K+ K D GP PI
Sbjct: 370 TEDGKPQKTLKITSYHPDTLFEQIWA--AMKGLNKTNATKNEDSGPWTPPI 418
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 42 TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPI 92
TEDG P + L +T+ P T +++ A GL K+ K D GP PI
Sbjct: 370 TEDGKPQKTLKITSYHPDTLFEQIWA--AMKGLNKTNATKNEDSGPWTPPI 418
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 29.5 bits (63), Expect = 6.8
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV N+P + T E+ FA G + + + + D+ + +AFV FS A A +A+
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRI-VYDRETGRP--RGFAFVEFSEEAGAQRAV 64
Query: 111 EAPSHEKILRGRNLYTSPAD 130
E + GRNL + A+
Sbjct: 65 E-QLNGVAFNGRNLRVNYAN 83
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.5 bits (63), Expect = 6.8
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R LYV NL T + +F Q G + K+ G N YAFV FS+ A Q
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKT--KVIFDGSNDP----YAFVEFSDHGQASQ 99
Query: 109 ALEAPSHEKIL 119
AL+ + +L
Sbjct: 100 ALQTMNKRLLL 110
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,028
Number of Sequences: 27539
Number of extensions: 467116
Number of successful extensions: 1219
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 110
length of query: 577
length of database: 12,573,161
effective HSP length: 85
effective length of query: 492
effective length of database: 10,232,346
effective search space: 5034314232
effective search space used: 5034314232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -