Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001475-TA|BGIBMGA001475-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR006553|Leucine-rich repeat,
cysteine-containing subtype, IPR001810|Cyclin-like F-box
(577 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 45 1e-04
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 44 2e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 44 4e-04
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 44 4e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 42 0.001
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 42 0.001
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 41 0.003
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 40 0.003
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 40 0.003
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 0.003
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.003
At1g21410.1 68414.m02679 F-box family protein similar to SKP1 i... 40 0.005
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 39 0.008
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 39 0.008
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 39 0.008
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 39 0.010
At3g58530.1 68416.m06524 F-box family protein-related contains w... 39 0.010
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 39 0.010
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.014
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 38 0.014
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.014
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.014
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 38 0.014
At1g77000.1 68414.m08967 F-box family protein similar to GP|2155... 38 0.018
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 38 0.024
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 38 0.024
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.024
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 37 0.032
At2g47310.1 68415.m05906 flowering time control protein-related ... 37 0.042
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 37 0.042
At2g25490.1 68415.m03052 F-box family protein (FBL6) contains si... 36 0.097
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.13
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.13
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 35 0.13
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 35 0.13
At1g75640.1 68414.m08788 leucine-rich repeat family protein / pr... 35 0.13
At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put... 35 0.13
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.13
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.13
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.13
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 35 0.17
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 35 0.17
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 34 0.22
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 34 0.30
At5g07610.1 68418.m00872 F-box family protein similar to unknown... 34 0.30
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 34 0.30
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 33 0.39
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 33 0.39
At4g29990.1 68417.m04266 light repressible receptor protein kina... 33 0.39
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 33 0.39
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 33 0.39
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.39
At5g07180.1 68418.m00818 leucine-rich repeat family protein / pr... 33 0.68
At4g10610.1 68417.m01735 RNA-binding protein, putative 33 0.68
At5g62710.1 68418.m07869 leucine-rich repeat family protein / pr... 32 0.90
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 32 0.90
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 32 0.90
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 32 0.90
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 32 0.90
At5g01720.1 68418.m00090 F-box family protein (FBL3) contains si... 32 1.2
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 32 1.2
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 32 1.2
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 32 1.2
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s... 31 1.6
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 31 1.6
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 31 1.6
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 1.6
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 31 2.1
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 2.1
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 2.1
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 31 2.1
At5g25350.1 68418.m03007 F-box family protein contains Pfam PF00... 31 2.8
At4g26340.1 68417.m03787 F-box family protein contains F-box dom... 31 2.8
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 2.8
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 2.8
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 2.8
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 31 2.8
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 31 2.8
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 31 2.8
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 2.8
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 30 3.6
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 30 3.6
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 30 3.6
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 30 3.6
At3g49150.1 68416.m05372 F-box family protein contains F-box dom... 30 3.6
At1g15740.1 68414.m01888 leucine-rich repeat family protein 30 3.6
At3g28890.1 68416.m03606 leucine-rich repeat family protein cont... 30 4.8
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 30 4.8
At1g23390.1 68414.m02928 kelch repeat-containing F-box family pr... 30 4.8
At5g56420.2 68418.m07043 F-box family protein contains F-box dom... 29 6.4
At5g56420.1 68418.m07042 F-box family protein contains F-box dom... 29 6.4
At5g27920.1 68418.m03354 F-box family protein contains similarit... 29 6.4
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 6.4
At3g58880.1 68416.m06562 F-box family protein contains F-box dom... 29 6.4
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 6.4
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 6.4
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 6.4
At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting... 29 6.4
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 6.4
At5g62570.1 68418.m07852 calmodulin-binding protein similar to c... 29 8.4
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 8.4
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C... 29 8.4
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 29 8.4
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont... 29 8.4
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 8.4
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 29 8.4
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 29 8.4
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 29 8.4
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 8.4
At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1... 29 8.4
At1g46264.1 68414.m05210 heat shock transcription factor family ... 29 8.4
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 29 8.4
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 29 8.4
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 44 DGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNP 103
D + +YV NL TT EL F QYG I S + G ++ + FV F NP
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSR----CFGFVNFENP 275
Query: 104 ADAHQALEAPSHEK 117
DA +A+EA + +K
Sbjct: 276 EDAARAVEALNGKK 289
Score = 37.9 bits (84), Expect = 0.018
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LYV NL T +L +FA++G I SC + G +K FV FS ++A + L
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS----GFVAFSAASEASRVL 385
Query: 111 EAPSHEKILRGRNLYTSPA 129
+ K++ G+ LY + A
Sbjct: 386 N-EMNGKMVGGKPLYVALA 403
Score = 33.5 bits (73), Expect = 0.39
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+ L+V NL L+ F+ G I SC + G ++ Y FV F A
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSR----GYGFVQFDTEDSAK 188
Query: 108 QALEAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDEAG 167
A+E + K+L + ++ P + AD K +F+ V++ S + DE
Sbjct: 189 NAIE-KLNGKVLNDKQIFVGPFLRKEERESAAD-----KMKFTNVYVKNLSEATTDDELK 242
Query: 168 TS 169
T+
Sbjct: 243 TT 244
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 44.4 bits (100), Expect = 2e-04
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
++YV NL P+ T EL F +G+++S W+ + P P YAF+ F +P DA A
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVA-------RRP-PGYAFLDFEDPRDARDA 54
Query: 110 LEA 112
+ A
Sbjct: 55 IRA 57
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 43.6 bits (98), Expect = 4e-04
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RK++V LP +TTR L GVF YG I+ C + + DK K + FV F A +
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVI-DKATGKA--KGFGFVMFKTRKGAKE 160
Query: 109 ALEAP 113
AL+ P
Sbjct: 161 ALKEP 165
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 43.6 bits (98), Expect = 4e-04
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RK++V LP +TTR L GVF YG I+ C + + DK K + FV F A +
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVI-DKATGKA--KGFGFVMFKTRKGAKE 160
Query: 109 ALEAP 113
AL+ P
Sbjct: 161 ALKEP 165
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 41.9 bits (94), Expect = 0.001
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 9 ERYFSPDLLHVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGV 68
ER+ + LL +++ A + + P + SV + I RKL++ L TT L +
Sbjct: 39 ERFTTDQLLDLLQEAIVRH----PDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSL 94
Query: 69 FAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLYTSP 128
F+ YG ++ + + DK K+ Y FVTF + A AL+ PS K + GR T
Sbjct: 95 FSSYGDLEEA-IVILDKVTGKS--KGYGFVTFMHVDGALLALKEPS--KKIDGRVTVTQL 149
Query: 129 ADSWHQ 134
A S +Q
Sbjct: 150 AASGNQ 155
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 41.9 bits (94), Expect = 0.001
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 9 ERYFSPDLLHVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGV 68
ER+ + LL +++ A + + P + SV + I RKL++ L TT L +
Sbjct: 39 ERFTTDQLLDLLQEAIVRH----PDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSL 94
Query: 69 FAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLYTSP 128
F+ YG ++ + + DK K+ Y FVTF + A AL+ PS K + GR T
Sbjct: 95 FSSYGDLEEA-IVILDKVTGKS--KGYGFVTFMHVDGALLALKEPS--KKIDGRVTVTQL 149
Query: 129 ADSWHQ 134
A S +Q
Sbjct: 150 AASGNQ 155
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 40.7 bits (91), Expect = 0.003
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+ +YV N+ T EL F+Q G I S L +KG +K + FV FS P +A
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK----GFGFVCFSTPEEAI 358
Query: 108 QALEAPSHEKILRGRNLYTSPA 129
A++ H ++ G+ LY + A
Sbjct: 359 DAVKT-FHGQMFHGKPLYVAIA 379
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+ ++V NLP T L +F ++G I SC + + G ++ Y FV F AH
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSR----GYGFVQFEQEDAAH 166
Query: 108 QALEAPSHEKILRGRNLY 125
A++ + I+ + +Y
Sbjct: 167 AAIQT-LNSTIVADKEIY 183
Score = 33.5 bits (73), Expect = 0.39
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LY+ NL + L FA++G I S + K N+ YAFV F NP DA +A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIA---KDENRL-CRGYAFVNFDNPEDARRAA 258
Query: 111 EAPSHEK 117
E + K
Sbjct: 259 ETVNGTK 265
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.003
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
L V N+ +TT +LY +FA+YG + ++ + + +AFV + +AH+A+
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSR---GFAFVRYKYKDEAHKAV 74
Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRS 160
E +++ GR + A + + GRV P SR RSRSRS
Sbjct: 75 ER-LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSR---RSRSRS 120
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.003
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
L V N+ +TT +LY +FA+YG + ++ + + +AFV + +AH+A+
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSR---GFAFVRYKYKDEAHKAV 74
Query: 111 EAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRS 160
E +++ GR + A + + GRV P SR RSRSRS
Sbjct: 75 ER-LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSR---RSRSRS 120
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 40.3 bits (90), Expect = 0.003
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 30 LAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNK 89
+ P+ R T + +YV NL TT +L F +YG I S + +G +K
Sbjct: 10 VGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSK 69
Query: 90 TPIPTYAFVTFSNPADAHQALEAPSHEK 117
+ FV F N DA +A+E+ + K
Sbjct: 70 ----GFGFVNFENADDAARAVESLNGHK 93
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 40.3 bits (90), Expect = 0.003
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
++YV NL P+ T EL F +G+I+S W+ + P P YAF+ F + DA A
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVA-------RRP-PGYAFLDFEDSRDARDA 54
Query: 110 L 110
+
Sbjct: 55 I 55
>At1g21410.1 68414.m02679 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 360
Score = 39.9 bits (89), Expect = 0.005
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 201 DCLTHILNYIPIRDIILSERVSKGWQIMVQEYLAGVRVLKTSWWQAEAARLTTAVLRRVL 260
+ L IL+ + R++I++ V GW+ + G+ L+ SW L +++ + +
Sbjct: 34 ELLMRILSLVDDRNVIVASGVCTGWRDAIS---FGLTRLRLSWCNNNMNSLVLSLVPKFV 90
Query: 261 ARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEEL------KLTDSSLVHLAHVDSCI 314
L L++ L D +IA C +L+EL K+TD SL LAH +
Sbjct: 91 -----KLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDL 145
Query: 315 EKITVANNT 323
K+ ++ T
Sbjct: 146 TKLNLSGCT 154
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 419 GLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGC-DGVSEEIVEA 470
G +L +LNLS ++ + + + C KL+ LN LCGC V++ +EA
Sbjct: 141 GCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLN---LCGCVKAVTDNALEA 190
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.1 bits (87), Expect = 0.008
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P LYVT L + T +L FA+ G + SC+L M P +AFVT S+ DA
Sbjct: 70 PGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVM---EPRTRVSRGFAFVTMSSLKDA 126
Query: 107 HQALEAPSHEKILRGR 122
+ ++ ++ +L GR
Sbjct: 127 ERCIKY-LNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.1 bits (87), Expect = 0.008
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P LYVT L + T +L FA+ G + SC+L M P +AFVT S+ DA
Sbjct: 69 PGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVM---EPRTRVSRGFAFVTMSSLKDA 125
Query: 107 HQALEAPSHEKILRGR 122
+ ++ ++ +L GR
Sbjct: 126 ERCIKY-LNQSVLEGR 140
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.1 bits (87), Expect = 0.008
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P KL+V LP + TE+ +F++YG IK + G +K + F+ + + A
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCL----FLKYESKEQA 162
Query: 107 HQALEAPSHEKILRGRNL 124
A+EA + I+ G N+
Sbjct: 163 VAAMEALNGRHIMEGANV 180
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.7 bits (86), Expect = 0.010
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 42 TEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFS 101
++D + +L+V NLP T EL F+ +G I L + DK ++ A++ +
Sbjct: 254 SDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVL-DKETKRS--RGIAYILYL 310
Query: 102 NPADAHQALEAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSK 161
P A +A+E + +GR L+ PA H+ E +D +V +T + R +
Sbjct: 311 IPECAARAMEELDNSS-FQGRLLHILPAK--HR--ETSDKQVNDTSNLPKTFKQKREEQR 365
Query: 162 DLDEAGTSTK 171
EAG TK
Sbjct: 366 KASEAGGDTK 375
Score = 34.3 bits (75), Expect = 0.22
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P KL+V N+ + T+ EL +F+ +G IKS +++ K N YAFV F +A
Sbjct: 667 PCTKLHVKNIAFEATKRELRQLFSPFGQIKS--MRLPKK--NIGQYAGYAFVEFVTKQEA 722
Query: 107 HQALEAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLD 164
A +A + GR+L A+ +E R K N R R SK ++
Sbjct: 723 LNAKKALASTHFY-GRHLVLEWAND-DNSMEAIRKRSAAKFDEENDNARKRKSSKAVE 778
>At3g58530.1 68416.m06524 F-box family protein-related contains weak
similarity to F-box protein FBL2 (GI:6010699) [Rattus
norvegicus]
Length = 353
Score = 38.7 bits (86), Expect = 0.010
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 20/199 (10%)
Query: 279 LNDRTAHSIARFCPKLE------ELKLTDSSLVHLAHVDSCIEKITVANNTHVT--GLFL 330
++D +I CPKL+ +++TD+ + +L I + ++ +T + L
Sbjct: 124 ISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQL 183
Query: 331 TGAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLCPAAMWKIVPMILKTXXXX 390
+ P L SL+ C + L + +L TL L K I
Sbjct: 184 VAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKI------- 236
Query: 391 XXXXXXXXXXXXVCFTTQSSDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLE 450
+C SDE + +L LNL+ + IT+A + I +C LE
Sbjct: 237 --SLLADLRFLDICGAQNISDEGIGHIAKCNKLESLNLTWCVRITDAGVNTIANSCTSLE 294
Query: 451 YLNEMDLCGCDGVSEEIVE 469
+L+ L G GV++ +E
Sbjct: 295 FLS---LFGIVGVTDRCLE 310
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P LY +L PK T L+ +F + S + + N+ + YA++ FSNP DA
Sbjct: 47 PNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVC---RDQNRRSLG-YAYINFSNPNDA 102
Query: 107 HQALEA 112
++A+EA
Sbjct: 103 YRAMEA 108
Score = 34.3 bits (75), Expect = 0.22
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LY+ NL +L +F++YG + S + + +G ++ + FV +SNP +A +AL
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR----GFGFVAYSNPEEALRAL 389
Query: 111 EAPSHEKILRGRNLYTSPA 129
+ + K++ + LY + A
Sbjct: 390 -SEMNGKMIGRKPLYIALA 407
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV NLP + EL F ++G+I S + M D+ N + FV F A A+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSR---CFGFVNFECTEAAASAV 286
Query: 111 E 111
E
Sbjct: 287 E 287
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 38.3 bits (85), Expect = 0.014
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LY+ NL +L +F++YG + SC + M +G ++ + FV +SNP +A A+
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSR----GFGFVAYSNPEEALLAM 385
Query: 111 EAPSHEKILRGRNLYTSPA 129
+ + K++ + LY + A
Sbjct: 386 K-EMNGKMIGRKPLYVALA 403
Score = 35.5 bits (78), Expect = 0.097
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 41 KTEDG-IP-IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFV 98
++E G +P +YV NLP + T EL F +YG I S + M D+ N ++ FV
Sbjct: 215 RSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSR---SFGFV 270
Query: 99 TFSNPADAHQALE 111
F +P A A+E
Sbjct: 271 NFVSPEAAAVAVE 283
Score = 31.9 bits (69), Expect = 1.2
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P LYV +L P + L +F Q + + L++ +++ YA+V F+NP DA
Sbjct: 43 PNSSLYVGDLDPSVNESHLLDLFNQVAPVHN--LRVCRDLTHRSL--GYAYVNFANPEDA 98
Query: 107 HQALEAPSHEKI 118
+A+E+ ++ I
Sbjct: 99 SRAMESLNYAPI 110
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 38.3 bits (85), Expect = 0.014
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 46 IPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPAD 105
+ +YV NL + EL VF ++G+ SC + +G +K + FV F N D
Sbjct: 221 VKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK----GFGFVNFENSDD 276
Query: 106 AHQALEA 112
A +A++A
Sbjct: 277 AARAVDA 283
Score = 34.3 bits (75), Expect = 0.22
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LYV NL T +L FA +G I SC + G ++ FV FS P +A +A+
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGS----GFVAFSTPEEATRAI 384
Query: 111 EAPSHEKILRGRNLYTSPA 129
+ K++ + LY + A
Sbjct: 385 -TEMNGKMIVTKPLYVALA 402
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.014
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
++YV NL P+ T EL F +G++++ W+ + P P YAF+ F + DA A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA-------RRP-PGYAFLEFDDERDALDA 54
Query: 110 LEA 112
+ A
Sbjct: 55 ISA 57
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.014
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
++YV NL P+ T EL F +G++++ W+ + P P YAF+ F + DA A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA-------RRP-PGYAFLEFDDERDALDA 54
Query: 110 LEA 112
+ A
Sbjct: 55 ISA 57
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 38.3 bits (85), Expect = 0.014
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV NLP + E+ +F +YG I LK+ + P YAFV F +P DA
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPG------YAFVEFEDPRDADD 60
Query: 109 AL 110
A+
Sbjct: 61 AI 62
>At1g77000.1 68414.m08967 F-box family protein similar to
GP|21554029| F-box protein AtFBL5 from [Arabidopsis
thaliana]; similar to F-box protein FBL2 GI:6063090 from
[Homo sapiens]
Length = 360
Score = 37.9 bits (84), Expect = 0.018
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 201 DCLTHILNYIPIRDIILSERVSKGWQIMVQEYLAGVRVLKTSWWQAEAARLTTAVLRRVL 260
+ L ILN + R +I++ + GW+ V G+ L SW + L ++ + +
Sbjct: 34 ELLMKILNLVDDRTVIIASCICSGWRDAVS---LGLTRLSLSWCKKNMNSLVLSLAPKFV 90
Query: 261 ARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEEL------KLTDSSLVHLAHVDSCI 314
L L + L D +IA C +L++L K+TD SL LA + +
Sbjct: 91 -----KLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNL 145
Query: 315 EKITVANNTHVTGLFLTGAAP--PQLSSLSFYNCY-SLQGTVLSAAMDSLPNLTTLKLDL 371
K+ ++ T + L +L L+ C ++ L A ++ L +L L
Sbjct: 146 TKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGW 205
Query: 372 C 372
C
Sbjct: 206 C 206
Score = 35.5 bits (78), Expect = 0.097
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 419 GLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGC-DGVSEEIVEA 470
G T L +LNLS ++ L + + C KL+ LN LCGC + VS+ ++A
Sbjct: 141 GCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILN---LCGCVEAVSDNTLQA 190
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 37.5 bits (83), Expect = 0.024
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG-DKGPNKTPIPTYAFVTFSNPADAH 107
R LYV NLP T E+Y +F +YG I+ +++G DK T AFV + + DA
Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGKYGAIRQ--IRIGCDKATKGT-----AFVVYEDIYDAK 71
Query: 108 QALE 111
A++
Sbjct: 72 NAVD 75
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.5 bits (83), Expect = 0.024
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 37 SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
S P + G P KLYV+ L +TT L F Q+G + + M DK N+ +A
Sbjct: 66 SSPPSSSSG-PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVM-DKVANRP--KGFA 121
Query: 97 FVTFSNPADAHQALEAPSHEKILRGRNLYTSPA 129
F+ + +A +A++ H K L GR ++ A
Sbjct: 122 FLRYETEEEAMKAIQG-MHGKFLDGRVIFVEEA 153
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.5 bits (83), Expect = 0.024
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
KL+V LP + TE+ +F++YG IK + G +K + F+ + + A A
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCL----FLKYESKEQAVAA 156
Query: 110 LEAPSHEKILRGRNL 124
+EA + I+ G N+
Sbjct: 157 MEALNGRHIMEGANV 171
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 37.1 bits (82), Expect = 0.032
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
K EDG+ KLYV +P ++T E+ F G+I KM P AF+TF
Sbjct: 153 KEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM---RPEDGAFSGIAFITF 209
Query: 101 SNPADAHQAL 110
A +AL
Sbjct: 210 DTEDGAKRAL 219
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 36.7 bits (81), Expect = 0.042
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
KLYV L +TT+ E+ VF++YG+I+ ++ + D + YAFV FS A A
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR----GYAFVQFSCKEMALAA 263
Query: 110 LEAPSHEKILRG 121
++A + +RG
Sbjct: 264 IKALNGLFTIRG 275
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 36.7 bits (81), Expect = 0.042
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTF 100
KT G+ LYV NL T+L +F+++G I SC + + G +K FV F
Sbjct: 218 KTRKGM---NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISK----GVGFVEF 270
Query: 101 SNPADAHQALEAPSHEKILRGRNLYTSPADSWHQ 134
S +A +A+ + K++ + +Y S A Q
Sbjct: 271 STSEEASKAM-LKMNGKMVGNKPIYVSLAQCKEQ 303
>At2g25490.1 68415.m03052 F-box family protein (FBL6) contains
similarity to grr1 GI:2407790 from [Glycine max]
Length = 628
Score = 35.5 bits (78), Expect = 0.097
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 279 LNDRTAHSIARFCPKLEELKL------TDSSLVHLAHVDSCIEKITVANNTHVT--GLFL 330
++D SI R CP L L L TD+ L+ +A + +EK+ + + +T GL
Sbjct: 164 VSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVA 223
Query: 331 TGAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLCP 373
+ P L+ L+ C + L A S L ++ + CP
Sbjct: 224 IAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCP 266
Score = 32.3 bits (70), Expect = 0.90
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 273 DHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVT--GLFL 330
D ++L T S+A+ KL+ L +TD SL + H I + +A +HV+ G ++
Sbjct: 270 DQGIASLLSNTTCSLAKL--KLQMLNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFWV 327
Query: 331 --TGAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNL 364
G +L+SL+ C + L + PN+
Sbjct: 328 MGNGVGLQKLNSLTITACQGVTDMGLESVGKGCPNM 363
Score = 29.1 bits (62), Expect = 8.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 404 CFTTQSSDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLCGCDGV 463
C + + A + + LR L++ +A L IG+ C +LE ++DLCG G+
Sbjct: 424 CLSIRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQLE---DIDLCGLKGI 480
Query: 464 SE 465
+E
Sbjct: 481 TE 482
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV NLP E+ +F++YG + LK+ + P YAFV F + DA
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPG------YAFVEFEDARDADD 60
Query: 109 AL 110
A+
Sbjct: 61 AI 62
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV NLP E+ +F++YG + LK+ + P YAFV F + DA
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPG------YAFVEFEDARDADD 60
Query: 109 AL 110
A+
Sbjct: 61 AI 62
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV NLP E+ +F +YG I LK+ + P Y FV F + DA
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRP------PCYCFVEFEHSRDAED 60
Query: 109 ALE 111
A++
Sbjct: 61 AIK 63
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV NL T L+ +F+QYG + S + G ++ + FV F NP +A +A+
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR----GFGFVNFCNPENAKKAM 259
Query: 111 EA 112
E+
Sbjct: 260 ES 261
Score = 32.7 bits (71), Expect = 0.68
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
LYV NL T L +F YG I S + + G +K + FV FSN ++ QA
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK----GFGFVCFSNCEESKQA 360
Score = 29.1 bits (62), Expect = 8.4
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LYV NL T + L +F +G I SC + + + G +K + FV F A A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKV-VEENGQSK----GFGFVQFDTEQSAVSAR 168
Query: 111 EAPSHEKILRGRNLYTS 127
A H ++ G+ L+ +
Sbjct: 169 SA-LHGSMVYGKKLFVA 184
>At1g75640.1 68414.m08788 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 1140
Score = 35.1 bits (77), Expect = 0.13
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 291 CPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQLSSLSFYNCYSLQ 350
C LE L+L +SL H+ + K+++ ++ LTG+ P Q+S S L
Sbjct: 601 CSSLEVLELGSNSLK--GHIPVYVSKLSLLKKLDLSHNSLTGSIPDQISKDSSLESLLLN 658
Query: 351 GTVLSAAM-DSLPNLTTL-KLDLCPAAMWKIVPMIL 384
LS + +SL LT L LDL + +P L
Sbjct: 659 SNSLSGRIPESLSRLTNLTALDLSSNRLNSTIPSSL 694
>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase, gi|2129635; contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 843
Score = 35.1 bits (77), Expect = 0.13
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 273 DHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTG 332
D+ W LN + S+ P++ L L+ S L H+ S +T+ ++ LTG
Sbjct: 393 DYIWEGLNC-SYDSLTP--PRITSLNLSSSGLT--GHISSSFSNLTMIQELDLSNNGLTG 447
Query: 333 AAPPQLSSLSFYNCYSLQGTVLSAAMDS 360
P LS L F +L+ L+ ++ S
Sbjct: 448 DIPEFLSKLKFLRVLNLENNTLTGSVPS 475
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV NLP E+ +F++YG + LK+ + P YAFV F + DA
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG------YAFVEFDDARDAED 60
Query: 109 AL 110
A+
Sbjct: 61 AI 62
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV NLP E+ +F++YG + LK+ + P YAFV F + DA
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG------YAFVEFDDARDAED 60
Query: 109 AL 110
A+
Sbjct: 61 AI 62
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV NLP E+ +F++YG + LK+ + P YAFV F + DA
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG------YAFVEFDDARDAED 60
Query: 109 AL 110
A+
Sbjct: 61 AI 62
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 34.7 bits (76), Expect = 0.17
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 39 PTKTEDGIP-IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAF 97
P +DG P LYV NL PK L F ++G I S + K F
Sbjct: 168 PGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGF 227
Query: 98 VTFSNPADAHQA 109
V+F N AD A
Sbjct: 228 VSFMNRADGQAA 239
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 34.7 bits (76), Expect = 0.17
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 294 LEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQLSSLSFYNCYSL---- 349
++EL L+ + LV H+ SC+ +T ++ LTG P L SL SL
Sbjct: 246 MQELDLSQNKLV--GHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDND 303
Query: 350 -QGTVLSAAMDSLPNLTTLKL 369
+G+ ++ +L NL LKL
Sbjct: 304 FEGSFSFGSLANLSNLMVLKL 324
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 34.3 bits (75), Expect = 0.22
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 43 EDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSN 102
+D + R +YV+++ + T L GVF G + C + GD PN + +AF+ F+N
Sbjct: 163 KDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRV-CGD--PNS--VLRFAFIEFTN 217
Query: 103 PADAHQAL 110
A AL
Sbjct: 218 EEGARAAL 225
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 33.9 bits (74), Expect = 0.30
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV NLP +T T+L VF +G IK +++ NK + FV F + AL
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRS---NKQQGFCFGFVEFETSSGKQSAL 351
Query: 111 EA 112
EA
Sbjct: 352 EA 353
>At5g07610.1 68418.m00872 F-box family protein similar to unknown
protein (emb|CAB85517.1)
Length = 420
Score = 33.9 bits (74), Expect = 0.30
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 191 SCTILDVLNRDCLTHILNYIPIRDIILSERVSKGWQIMVQEYLAGVRVLKTS 242
S TI+ ++ D L IL+++PI+ ++ +RVSK W ++ + RV+K++
Sbjct: 27 SATIVADID-DVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSN 77
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 33.9 bits (74), Expect = 0.30
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 36 RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
R+ + ED I R +YV+++ T L G+F+ G + C + GD PN + +
Sbjct: 116 RASKAQREDSIR-RTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRI-CGD--PNS--VLRF 169
Query: 96 AFVTFSNPADAHQAL 110
AFV FS+ A AL
Sbjct: 170 AFVEFSDDQGARSAL 184
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.5 bits (73), Expect = 0.39
Identities = 22/80 (27%), Positives = 32/80 (40%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
++ +D ++Y++NLPP T EL +F G + K G K I
Sbjct: 266 VKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKI 325
Query: 95 YAFVTFSNPADAHQALEAPS 114
Y + DA A E PS
Sbjct: 326 YTDEKGNYKGDACLAYEDPS 345
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.5 bits (73), Expect = 0.39
Identities = 22/80 (27%), Positives = 32/80 (40%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPT 94
++ +D ++Y++NLPP T EL +F G + K G K I
Sbjct: 266 VKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKI 325
Query: 95 YAFVTFSNPADAHQALEAPS 114
Y + DA A E PS
Sbjct: 326 YTDEKGNYKGDACLAYEDPS 345
>At4g29990.1 68417.m04266 light repressible receptor protein kinase
identical to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 876
Score = 33.5 bits (73), Expect = 0.39
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 272 IDHHWSALNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLT 331
+D+ W L HS PK L L+ S L +D +T N ++ LT
Sbjct: 391 VDNSWEGLE--CLHSDNNTSPKSIALNLSSSGLT--GQIDPAFANLTSINKLDLSNNSLT 446
Query: 332 GAAPPQLSSLSFYNCYSLQGTVLSAAM 358
G P L+SL +L+G L+ ++
Sbjct: 447 GKVPDFLASLPNLTELNLEGNKLTGSI 473
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.5 bits (73), Expect = 0.39
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+YV NL T+ L +F++ G + S + + P + + FVTFS+ D A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVS---RVPGTSKSTGFGFVTFSSEEDVEAA 234
Query: 110 LEAPSHEKILRGRNLYTSPA 129
+ A + +L G+ + + A
Sbjct: 235 IVA-LNNSLLEGQKIRVNKA 253
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 33.5 bits (73), Expect = 0.39
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 43 EDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSN 102
ED I R +YV+++ T L G+F+ G + C + GD P+ + +AFV F++
Sbjct: 136 EDSIR-RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRI-CGD--PHS--VLRFAFVEFAD 189
Query: 103 PADAHQAL 110
AH+AL
Sbjct: 190 DQGAHEAL 197
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.5 bits (73), Expect = 0.39
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 36 RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
RSV + E+ P LYVT L + T +L FA+ G + L + P +
Sbjct: 64 RSVSSDAEN--PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVL---DPWTRESRGF 118
Query: 96 AFVTFSNPADAHQALEAPSHEKILRGRNLYT---------SPADSWHQPVEDADGR---V 143
F++ + DA++ + + H +L+GR + +P + + A GR
Sbjct: 119 GFISMKSVGDANRCIRSLDH-SVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSP 177
Query: 144 CWKPRFSRTNVRSRSRSKDLD 164
+ PR S + RSRSRS D
Sbjct: 178 SYSPRRSVSCSRSRSRSYSSD 198
>At5g07180.1 68418.m00818 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 932
Score = 32.7 bits (71), Expect = 0.68
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 293 KLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQ---LSSLSFYN--CY 347
+L EL L +++LV L + S I N +V G FL+GA P + L SL++ N
Sbjct: 326 QLFELNLANNNLVGL--IPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSN 383
Query: 348 SLQGTVLSAAMDSLPNLTTLKL 369
S +G + A + + NL TL L
Sbjct: 384 SFKGKI-PAELGHIINLDTLDL 404
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 32.7 bits (71), Expect = 0.68
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
R +YV+++ + T +L G+F +G + C + GD PN + +AF+ F++ A
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRI-CGD--PNS--VLRFAFIEFTDEVGART 204
Query: 109 AL 110
AL
Sbjct: 205 AL 206
>At5g62710.1 68418.m07869 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 604
Score = 32.3 bits (70), Expect = 0.90
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 293 KLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQLSSLSFYNCYSLQGT 352
+L+ L L +SL H ++ + I T ++ FL G PP L +L+F L
Sbjct: 93 RLQRLALHQNSL-H-GNIPNEITNCTELRAMYLRANFLQGGIPPDLGNLTFLTILDLSSN 150
Query: 353 VLSAAM-DSLPNLTTLK 368
L A+ S+ LT L+
Sbjct: 151 TLKGAIPSSISRLTRLR 167
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 32.3 bits (70), Expect = 0.90
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+YV NLP +T T+L VF +G IK +++ NK + FV F + AL
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRS---NKQGF-CFGFVEFETSSGKQSAL 350
Query: 111 EA 112
EA
Sbjct: 351 EA 352
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 32.3 bits (70), Expect = 0.90
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 35 IRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG-DKGPNKTPIP 93
I ++ + I R ++V TT+ L F YG I+ C + M D G K
Sbjct: 394 ISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGK---- 449
Query: 94 TYAFVTFSNPADAHQALEAP 113
Y FV F A +AL+ P
Sbjct: 450 GYGFVMFKTRKGAREALKRP 469
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 32.3 bits (70), Expect = 0.90
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG-DKGPNKTPIPTYAFVTFSNPADAH 107
R LY+ NLP T + Y +F +Y I+ +++G +KG T AFV + + DA
Sbjct: 20 RLLYICNLPFSITSEDTYDLFGRYSTIRQ--VRIGCEKGTKGT-----AFVVYEDIYDAK 72
Query: 108 QALE 111
+A++
Sbjct: 73 KAVD 76
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 32.3 bits (70), Expect = 0.90
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 36 RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
RSV + E+ P LYVT L + T +L FA+ G + L + P +
Sbjct: 34 RSVSSDAEN--PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVL---DPWTRESRGF 88
Query: 96 AFVTFSNPADAHQALEAPSHEKILRGRNLYTSPADSWHQ 134
F++ + DA++ + + H +L+GR + T W Q
Sbjct: 89 GFISMKSVGDANRCIRSLDH-SVLQGR-VITVEKFLWQQ 125
>At5g01720.1 68418.m00090 F-box family protein (FBL3) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 665
Score = 31.9 bits (69), Expect = 1.2
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 287 IARFCPKLEELKLTDSSL--VHLAHVDSCIE----KITVANNTHVTGLFLTGAAPPQLSS 340
I + C LEEL LTD+ + L + SC+ K+ + N GL G L
Sbjct: 402 IGQKCRLLEELDLTDNEIDDEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRE 461
Query: 341 LSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLC 372
L Y + +S +L T+ + C
Sbjct: 462 LDLYRSVGITDVGISTIAQGCIHLETINISYC 493
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.9 bits (69), Expect = 1.2
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
++YV NL P TT L F+ YG + + M D+ +++ + FVT+S+ ++A A
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDA-IVMRDRYTDRS--RGFGFVTYSSHSEAEAA 60
Query: 110 LEAPSHEKILRGRNL 124
+ K L GR +
Sbjct: 61 VSG-MDGKELNGRRV 74
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 47 PIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADA 106
P R L+V NLP EL F ++G ++S + G +YAFV F++ DA
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGR---------SYAFVNFNHDEDA 71
Query: 107 HQALEA 112
A+E+
Sbjct: 72 FAAIES 77
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 31.9 bits (69), Expect = 1.2
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 36 RSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTY 95
R+ + ED I R +YV++L + T +L G+F G + C + GD PN + +
Sbjct: 161 RTSMAQREDVIR-RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRI-CGD--PNS--VLRF 214
Query: 96 AFVTFSNPADAHQAL 110
AF+ F++ A AL
Sbjct: 215 AFIEFTDEEGAMTAL 229
>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
similarity to F-box protein FBL2 GI:6063090 from [Homo
sapiens]
Length = 942
Score = 31.5 bits (68), Expect = 1.6
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 291 CPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAP--PQLSSLSFYNCYS 348
CP+L L L S++ ++ + +A+ + + AA PQL SL NC
Sbjct: 345 CPQLRSLSLKRSNMSQAMLNCPLLQLLDIASCHKLLDAAIRSAAISCPQLESLDVSNCSC 404
Query: 349 LQGTVLSAAMDSLPNLTTLKLDLCP 373
+ L + NL L CP
Sbjct: 405 VSDETLREIAQACANLHILNASYCP 429
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 31.5 bits (68), Expect = 1.6
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 29 ELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPN 88
+L Y + P T D P + L+V+ L +++ +++ F YG IK L + D+ N
Sbjct: 120 DLKKYDPNNDPNATGD--PYKTLFVSRLNYESSESKIKREFESYGPIKRVHL-VTDQLTN 176
Query: 89 KTPIPTYAFVTFSNPADAHQALEAPSHEKI 118
K YAF+ + + D A + +KI
Sbjct: 177 KP--KGYAFIEYMHTRDMKAAYKQADGQKI 204
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 31.5 bits (68), Expect = 1.6
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RK++V L T L F QYG I+ C + DK ++ Y F+ F + + A
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVV-DKVSGQS--KGYGFILFKSRSGARN 184
Query: 109 ALEAP 113
AL+ P
Sbjct: 185 ALKQP 189
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.5 bits (68), Expect = 1.6
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 53 VTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQALEA 112
V+ LP T +L F++ G ++ C+L + +KG ++ +AFV F+ D ++A+E
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFL-VTNKGSDEH--RGFAFVKFALQEDVNRAIEL 80
Query: 113 PSHEKILRGRNLYTSPADSWHQP 135
+ + GR + A H+P
Sbjct: 81 KNGSTV-GGRRITVKQAA--HRP 100
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 31.1 bits (67), Expect = 2.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 116 EKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDE 165
E L N Y +PA SW + E+ D W R + V + + K+L+E
Sbjct: 544 ETCLSSYNFYETPAPSWGEEFEEEDN---WSSRSNNNQVVAPTWEKELEE 590
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 2.1
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 37 SVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYA 96
S P E+ I +L N+P +T ++ +F +YG + + M K N+ +
Sbjct: 82 SAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLV---- 137
Query: 97 FVTFSNPADAHQALEA 112
F+ ++P +A AL++
Sbjct: 138 FIEMASPEEAATALKS 153
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+LYV L +T +L +F++YG ++ +K YAFV FS+P DA A
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----------DYAFVEFSDPRDADDA 60
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 31.1 bits (67), Expect = 2.1
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 267 LLALHIDHHWSA--LNDRTAHSIARFCPKLEELKL-----TDSSLVHLAHVDSCIEKITV 319
L LHID W A + D ++A+FC +L+EL L T SL LA +E++ +
Sbjct: 311 LRKLHIDG-WKANLIGDEGLVAVAKFCSQLQELVLIGVNPTTLSLGMLAAKCLNLERLAL 369
Query: 320 --ANNTHVTGLFLTGAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLCPAAM 376
+ L A P L L NC + + + P LT +K+ C +
Sbjct: 370 CGCDTFGDPELSCIAAKCPALRKLCIKNC-PISDVGIENLANGCPGLTKVKIKKCKGVL 427
>At5g25350.1 68418.m03007 F-box family protein contains Pfam
PF00646: F-box domain and Pfam PF00560: Leucine Rich
Repeat (6 copies); similar to F-box protein FBL6
(GI:4432860) [Homo sapiens]
Length = 623
Score = 30.7 bits (66), Expect = 2.8
Identities = 50/204 (24%), Positives = 77/204 (37%), Gaps = 23/204 (11%)
Query: 193 TILDVLNRDCLTHILNYIPI-RDIILSERVSKGW-------------QIMVQEYLAGVRV 238
T +DVL +CL IL +P ++ VSK W + VQ+ G
Sbjct: 53 TSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLSSISRSEVNESSVQDVEEGEGF 112
Query: 239 LKTSWWQAEAARLTTAVLR-RVLARVGDSLLALHIDHHWSALNDRTAHSIARFCPKLEEL 297
L S +A L A + +R G L + S + D ++A CP L +
Sbjct: 113 LSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAVAHGCPSLRIV 172
Query: 298 KL------TDSSLVHLAHVDSCIEKITVANNTHVT--GLFLTGAAPPQLSSLSFYNCYSL 349
L +D L +A IEK+ ++ +T GL LS L+ +C +
Sbjct: 173 SLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGV 232
Query: 350 QGTVLSAAMDSLPNLTTLKLDLCP 373
L A NL ++ + CP
Sbjct: 233 GNEGLRAIARRCVNLRSISIRSCP 256
>At4g26340.1 68417.m03787 F-box family protein contains F-box domain
Pfam:PF00646
Length = 419
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 198 LNRDCLTHILNYIPIRDIILSERVSKGWQ 226
L+ D L IL++IP +D++ + +SK WQ
Sbjct: 7 LSDDLLLQILSFIPGKDVVATSLLSKRWQ 35
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 30.7 bits (66), Expect = 2.8
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K+ V NLP T+ L F+ +G I L + D+ ++ YAF+ F++ DA A
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKL-IKDEAMKRSK--GYAFIQFTSQDDAFLA 97
Query: 110 LEAPSHEKILRGRNLY 125
+E ++ GR +Y
Sbjct: 98 IET-MDRRMYNGRMIY 112
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
KL+V LP + E+ +F++YG IK + G + +K AF+ + A A
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSK----GCAFLKYETKEQAVSA 162
Query: 110 LEAPSHEKILRG 121
+E+ + + + G
Sbjct: 163 MESINGKHKMEG 174
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
KL+V LP + E+ +F++YG IK + G + +K AF+ + A A
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSK----GCAFLKYETKEQAVSA 162
Query: 110 LEAPSHEKILRG 121
+E+ + + + G
Sbjct: 163 MESINGKHKMEG 174
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RK++V L T L F QYG I+ C + DK K+ Y F+ + + + A
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDC-KAVFDKISGKS--KGYGFILYKSRSGARN 196
Query: 109 ALEAP 113
AL+ P
Sbjct: 197 ALKQP 201
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RK++V L T L F QYG I+ C + DK K+ Y F+ + + + A
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDC-KAVFDKISGKS--KGYGFILYKSRSGARN 196
Query: 109 ALEAP 113
AL+ P
Sbjct: 197 ALKQP 201
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RK++V L T L F QYG I+ C + DK K+ Y F+ + + + A
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDC-KAVFDKISGKS--KGYGFILYKSRSGARN 196
Query: 109 ALEAP 113
AL+ P
Sbjct: 197 ALKQP 201
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.7 bits (66), Expect = 2.8
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 49 RKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
RKL+V NLP + ++ +F Q G + + + G N+ +AFVT ++ +A
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNR----GFAFVTMASGEEAQA 150
Query: 109 ALE 111
A++
Sbjct: 151 AID 153
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.3 bits (65), Expect = 3.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
+Y+ N+ TT +LY +F++ G IK + MG KTP + FV F + D A+
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKK--IIMGLDKNTKTPC-GFCFVLFYSREDTEDAV 92
Query: 111 E 111
+
Sbjct: 93 K 93
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 30.3 bits (65), Expect = 3.6
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 26 SNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK 85
S+ ++ YG + + + +YV NLP + +E+ F +G IK + + +
Sbjct: 234 SSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTR 293
Query: 86 GPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLY 125
YAFV F + A++A L GR +Y
Sbjct: 294 --KDVMGVCYAFVEFEDMTSVENAIKA--SPIYLGGRQVY 329
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 30.3 bits (65), Expect = 3.6
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 26 SNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDK 85
S+ ++ YG + + + +YV NLP + +E+ F +G IK + + +
Sbjct: 293 SSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTR 352
Query: 86 GPNKTPIPTYAFVTFSNPADAHQALEAPSHEKILRGRNLY 125
YAFV F + A++A L GR +Y
Sbjct: 353 --KDVMGVCYAFVEFEDMTSVENAIKA--SPIYLGGRQVY 388
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.3 bits (65), Expect = 3.6
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
L+V NL P+T ++++ F G + S L + +G + Y FV F++ + +AL
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKH----VGYGFVEFASADETKKAL 301
Query: 111 EAPSHE 116
E + E
Sbjct: 302 ENKNGE 307
>At3g49150.1 68416.m05372 F-box family protein contains F-box domain
Pfam:PF00646
Length = 590
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 194 ILDVLNRDCLTHILNYIPIRDIILSERVSKGWQ 226
I+ L + HIL+++PI D L+ +SK WQ
Sbjct: 17 IISDLPEALICHILSFLPIEDSALTSVLSKKWQ 49
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 30.3 bits (65), Expect = 3.6
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 410 SDEFCEALTGLTELRRLNLSRNIHITNAVLKQIGQTCHKLEYLNEMDLC 458
SD CE + L L+ LNL N +ITN+ L + + KLE LN +D C
Sbjct: 323 SDSGCEKFSDLINLKILNLGMN-NITNSCLVHL-KGLTKLESLN-LDSC 368
>At3g28890.1 68416.m03606 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 711
Score = 29.9 bits (64), Expect = 4.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 295 EELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQLSSLSFYNCYSLQGTVL 354
E L L S+ H+ S + K+T + V+ L G P ++ +LSF +C + L
Sbjct: 545 ELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIPQEIGNLSFLSCMNFSHNQL 604
Query: 355 S 355
+
Sbjct: 605 A 605
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.9 bits (64), Expect = 4.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 48 IRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAH 107
+R +YV N T ++L +F+++G +K +K G YAFV F + DA
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSG-----------YAFVYFEDERDAE 49
Query: 108 QALEAPSHEKILRGR 122
A+ + GR
Sbjct: 50 DAIRRTDNTTFGYGR 64
>At1g23390.1 68414.m02928 kelch repeat-containing F-box family
protein similar to hypothetical protein GB:AAF27090
GI:6730669 from (Arabidopsis thaliana); contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 394
Score = 29.9 bits (64), Expect = 4.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 198 LNRDCLTHILNYIPIRDIILSERVSKGWQIMVQEYLAGVRVLKTSWW 244
++ D L IL+Y+P+ D+ + +VSK W V +R LKT W
Sbjct: 20 IDGDILESILSYLPLLDLDSACQVSKSWNRAV---FYSLRRLKTMPW 63
>At5g56420.2 68418.m07043 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 29.5 bits (63), Expect = 6.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 195 LDVLNRDCLTHILNYIPIRDIILSERVSKGWQIM 228
L L D L IL+++P +D++++ +SK W+ +
Sbjct: 8 LSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFL 41
>At5g56420.1 68418.m07042 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 29.5 bits (63), Expect = 6.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 195 LDVLNRDCLTHILNYIPIRDIILSERVSKGWQIM 228
L L D L IL+++P +D++++ +SK W+ +
Sbjct: 8 LSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFL 41
>At5g27920.1 68418.m03354 F-box family protein contains similarity
to leucine-rich repeats containing F-box protein FBL3
GI:5919219 from [Homo sapiens]
Length = 642
Score = 29.5 bits (63), Expect = 6.4
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 279 LNDRTAHSIARFCPKLEELKLTDSSLVH---LAHVDSCIE----KITVANNTHVTGLFLT 331
+ ++ S+ + ++EL LTD V+ L ++ C K+ + N G+F
Sbjct: 390 ITEKGLQSLGCYSMLVQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHI 449
Query: 332 GAAPPQLSSLSFYNCYSLQGTVLSAAMDSLPNLTTLKLDLC 372
G+ +L L Y C L+A +L L L C
Sbjct: 450 GSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYC 490
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.5 bits (63), Expect = 6.4
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 45 GIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPA 104
G +K++V LP T E F Q+G I + M D + + F+TF +
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADV-VVMYDHNTQRP--RGFGFITFDSEE 174
Query: 105 DAHQALEAPSHE 116
L HE
Sbjct: 175 SVDMVLHKTFHE 186
>At3g58880.1 68416.m06562 F-box family protein contains F-box domain
Pfam:PF00646
Length = 454
Score = 29.5 bits (63), Expect = 6.4
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 194 ILDVLNRDCLTHILNYIPIRDIILSERVSKGWQIMVQEYLAGVRVLKTSWWQAEAARLTT 253
++ L D L HIL+ + ++ L+ +SK W+ ++ ++ + +++ E + T
Sbjct: 4 LVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLI-AFVPYLEFDDSAFLNPEEGKQTR 62
Query: 254 AVLRRVLARVGDSLLALHID 273
R+ D +LALH D
Sbjct: 63 EGTRQSFIDFVDRVLALHGD 82
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 6.4
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
LYV+NL T ++++ +F+ +G + + + D+ ++ AFV + + DA +A
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTV-LKDRHTRQS--RGVAFVLYVSREDAAKAA 115
Query: 111 EAPSHEKILRGRNLYTSPA 129
+ KIL GR L S A
Sbjct: 116 RS-MDAKILNGRKLTVSIA 133
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.5 bits (63), Expect = 6.4
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 51 LYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQAL 110
++V NLPP T + F Q+G IK +++ ++G + V F + A A +A+
Sbjct: 1198 VHVKNLPPNVTTDWVENAFKQFGPIKRGGVQVSNRGVGN----WFGNVKFVHAAAAERAV 1253
Query: 111 EAPSHEKILRGRNL 124
+L G NL
Sbjct: 1254 NPQVLLIMLPGMNL 1267
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.5 bits (63), Expect = 6.4
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+LYV L +T +L +F++YG ++ +K YAFV F +P DA A
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----------DYAFVEFGDPRDADDA 60
>At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting
partner 3-related contains similarity to SKP1
interacting partner 3 GI:10716951 from [Arabidopsis
thaliana]
Length = 307
Score = 29.5 bits (63), Expect = 6.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 196 DVLNRDCLTHILNYIPIRDIILSERVSKGWQIMVQ 230
D L DC+++I+++ RD+ +S VSK + VQ
Sbjct: 46 DDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQ 80
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.5 bits (63), Expect = 6.4
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K++V L +T L F QYG I + + DK ++ Y FVTF +P A +A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEA-VVIADKNTGRSK--GYGFVTFRDPEAARRA 81
Query: 110 LEAPSHEKILRGR 122
P+ I+ GR
Sbjct: 82 CADPT--PIIDGR 92
>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 487
Score = 29.1 bits (62), Expect = 8.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 200 RDCLTHI-LNYIPIRDIILSERVSKGWQIMVQEYLAGVRVLKTSWWQAEAARLTTAVLRR 258
+D LTH LN +R ++ + SK W+I + + V +QA + TAV+
Sbjct: 239 KDFLTHFHLNSSKLRQVLGTGMSSKMWEITLDHARSCVLDSSVHVYQAPGFQKKTAVVFN 298
Query: 259 VLARV 263
V+A+V
Sbjct: 299 VVAQV 303
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.1 bits (62), Expect = 8.4
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 50 KLYVTNLPPKTTRTE-LYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQ 108
K+YV LP TRTE L F ++G I + K+ G + + FVTF A +
Sbjct: 10 KIYVAGLP-WITRTEGLISYFERFGEI--VYAKVVCDGATQRS-KGFGFVTFREVESATR 65
Query: 109 ALEAPSH 115
A E P+H
Sbjct: 66 ACENPNH 72
>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phosphatase 2C (GI:10432446)
[Nicotiana tabacum]
Length = 416
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 264 GDSLLALHIDHHWSALNDRTAHSIARFCPKLE 295
GD L L D W L+ + A IARFC + E
Sbjct: 328 GDECLVLASDGLWDVLSSQLACDIARFCLREE 359
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 29.1 bits (62), Expect = 8.4
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K++V NLP + E F Q+G I++ L G K + F+ ++ A +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKN--AGFGFIIYAAEKSAMKA 223
Query: 110 LEAPSHEKILRGRNLYTSPADSWHQPVEDADGRVCWKPRFSRTNVRSRSRSKDLDEAGTS 169
+E E GR + T D + A+ RV W S S + G+
Sbjct: 224 VEFDGVE--FHGR-ILTVKLDDGKRLKTKAEQRVRWVEEGEEDTKMSNKSSWHQEREGSR 280
Query: 170 TKMSTV 175
+ +
Sbjct: 281 KSLQRI 286
>At4g36180.1 68417.m05148 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 1136
Score = 29.1 bits (62), Expect = 8.4
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 291 CPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQLSSLSFYNCYSLQ 350
C LE L+L + L + H+ + + ++ + L+G PP++S S N SL
Sbjct: 595 CSALEVLELRSNRL--MGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLD 652
Query: 351 GTVLSAAM-DSLPNLTTL-KLDL 371
LS + S L+ L K+DL
Sbjct: 653 HNHLSGVIPGSFSGLSNLTKMDL 675
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 8.4
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
+LYV NLP T +EL +F + G + + + DK +++ + FVT + +A +A
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRS--RGFGFVTMGSIEEAKEA 173
Query: 110 LE 111
++
Sbjct: 174 MQ 175
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 29.1 bits (62), Expect = 8.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 39 PTKTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFV 98
P K E+G + L V+NL P T +L +F+ G + C + T A++
Sbjct: 341 PEKGENGDLKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSI---------TDSKHIAYI 391
Query: 99 TFSNPADAHQALEAPSHEKILRGRNL 124
+SN +A AL + E R N+
Sbjct: 392 EYSNSEEATAALALNNTEVFGRALNV 417
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.1 bits (62), Expect = 8.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG-DKGPNKTPIPTYAFVT 99
+ DG +++V L T +L F +YG I C + +G D G + + F+T
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPR----GFGFIT 59
Query: 100 FSNPADAHQALE 111
F++ A A++
Sbjct: 60 FTDRRGADDAIK 71
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.1 bits (62), Expect = 8.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 41 KTEDGIPIRKLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMG-DKGPNKTPIPTYAFVT 99
+ DG +++V L T +L F +YG I C + +G D G + + F+T
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPR----GFGFIT 59
Query: 100 FSNPADAHQALE 111
F++ A A++
Sbjct: 60 FTDRRGADDAIK 71
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.1 bits (62), Expect = 8.4
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKM-GDKGPNKTPIPTYAFVTFSNPADAHQ 108
KL+V NL T L G F + G + + GD G ++ Y FV +S+ A+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRG----YGFVCYSSKAEMET 233
Query: 109 ALEA 112
ALE+
Sbjct: 234 ALES 237
>At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 607
Score = 29.1 bits (62), Expect = 8.4
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 275 HWSALNDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAA 334
H ++DR H+I C L EL + S H+ DS IE + G
Sbjct: 477 HMPGISDRAIHTITHCCKALTELSI--RSCFHV--TDSSIESLATWERQAEGG------- 525
Query: 335 PPQLSSLSFYNCYSL 349
QL L+ +NC SL
Sbjct: 526 SKQLRKLNVHNCVSL 540
>At1g46264.1 68414.m05210 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 348
Score = 29.1 bits (62), Expect = 8.4
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 280 NDRTAHSIARFCPKLEELKLTDSSLVHLAHVDSCIEKITVANNTHVTGLFLTGAAPPQLS 339
N+R S +L +K + +++ V + ++ + +NN+ FL Q
Sbjct: 200 NERLRRSNTVLMSELAHMKKLYNDIIYF--VQNHVKPVAPSNNSSYLSSFLQKQQQQQPP 257
Query: 340 SLSFYNCYSLQGTVLSAAMDSLP 362
+L +YN ++ T L+A S P
Sbjct: 258 TLDYYNTATVNATNLNALNSSPP 280
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 29.1 bits (62), Expect = 8.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K++V L +T + L F Q+G I + + DK ++ Y FVTF +P A +A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEA-VVITDKSSGRSK--GYGFVTFCDPEAAQKA 64
Query: 110 LEAPS 114
P+
Sbjct: 65 CVDPA 69
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 29.1 bits (62), Expect = 8.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 50 KLYVTNLPPKTTRTELYGVFAQYGLIKSCWLKMGDKGPNKTPIPTYAFVTFSNPADAHQA 109
K++V L +T + L F Q+G I + + DK ++ Y FVTF +P A +A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEA-VVITDKSSGRSK--GYGFVTFCDPEAAQKA 64
Query: 110 LEAPS 114
P+
Sbjct: 65 CVDPA 69
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,855,429
Number of Sequences: 28952
Number of extensions: 450352
Number of successful extensions: 1569
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 183
length of query: 577
length of database: 12,070,560
effective HSP length: 85
effective length of query: 492
effective length of database: 9,609,640
effective search space: 4727942880
effective search space used: 4727942880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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