BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein L25/L23, IPR012678|Ribosomal L23 and L15e, core (150 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 44 1e-05 SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 36 0.003 SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 32 0.032 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 0.69 SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 27 1.6 SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 2.1 SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 26 2.1 SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 26 2.1 SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 2.8 SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 2.8 SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 25 4.9 SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 25 4.9 SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 4.9 SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 4.9 SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 6.5 SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.5 SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 6.5 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.5 SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 6.5 SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 24 8.5 SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 24 8.5 SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 24 8.5 SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 24 8.5 SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.5 >SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|Schizosaccharomyces pombe|chr 1|||Manual Length = 161 Score = 43.6 bits (98), Expect = 1e-05 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 18 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFK 77 V+ PN L R Q P F + + K+D+++YL+ +Y + VV V+++I GK Sbjct: 10 VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68 Query: 78 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 108 ++ + G V + K V + + F YP+ Sbjct: 69 RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96 >SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|Schizosaccharomyces pombe|chr 2|||Manual Length = 141 Score = 35.9 bits (79), Expect = 0.003 Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 37 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 82 N + FH ++ K+ IKN ++K+Y V V + T I KK VK Sbjct: 79 NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124 >SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosaccharomyces pombe|chr 2|||Manual Length = 141 Score = 32.3 bits (70), Expect = 0.032 Identities = 16/46 (34%), Positives = 23/46 (50%) Query: 37 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 82 N + FH ++ K+ IK + K+Y V V + T I KK VK Sbjct: 79 NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 27.9 bits (59), Expect = 0.69 Identities = 15/70 (21%), Positives = 35/70 (50%) Query: 79 DVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHN 138 D +K + + +D + VT K E +++E+E + + + E+K+ F + + ++ Sbjct: 274 DELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYS 333 Query: 139 KSRPDIPSWF 148 + D+ S F Sbjct: 334 CAEDDLKSLF 343 >SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 560 Score = 26.6 bits (56), Expect = 1.6 Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 95 FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 134 F+T+ +T+ YPD+ +K + ++ + S F KY Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457 >SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 26.2 bits (55), Expect = 2.1 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 85 VIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDI 144 ++KE + + K++ KY + E+S +E+E ++ ++ F + + S P Sbjct: 97 IVKESKEGIT-LNKKKSLEIKYDE--ERSFDEKENDESEFEDGQQGFIPLLVNRNSDPSE 153 Query: 145 PSWFSI 150 S FS+ Sbjct: 154 KSTFSL 159 >SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 735 Score = 26.2 bits (55), Expect = 2.1 Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 98 LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 142 +PK T + + EK EEEE + L+ + + +DH P Sbjct: 1 MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELP 45 >SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual Length = 959 Score = 26.2 bits (55), Expect = 2.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 105 KYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 142 K D+ E EEE +++LD +K F +Y K P Sbjct: 373 KVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTP 410 >SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 359 Score = 25.8 bits (54), Expect = 2.8 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Query: 107 PDLFEKSINEEEEHAKSLDESKKNF---RKY 134 PDL E+S +EE + S E K NF RKY Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171 >SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1019 Score = 25.8 bits (54), Expect = 2.8 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 44 SMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIK-------EDDVKVAFV 96 S+E ++K + ++ + T +N + KK+ K +++K EDD+ Sbjct: 297 SVEDDSLELKEITPEALDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELE 356 Query: 97 TLPKTMTFKYPDLFEKSINEEEEH 120 K T ++ + ++EE EH Sbjct: 357 IEVKPKTTALDNIEKSKLSEENEH 380 >SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 358 Score = 25.0 bits (52), Expect = 4.9 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Query: 8 IYQRGNPQLRVFLPNFWMKLVRPHPKQLP-NIVHFHCSMEMTKYDIKNYLEKIYEVPVVD 66 +Y G+ +L++ F + P K+L NIV +E+T D+ NY I + + D Sbjct: 58 LYGPGSEKLKIDQRTF----LTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKD 113 Query: 67 VRTKINMGKFKKDVVKGYVIKEDD--VKVAFVTLPKTM 102 V + K + K VI D + A L +TM Sbjct: 114 VAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTM 151 >SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 184 Score = 25.0 bits (52), Expect = 4.9 Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 29 RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPV 64 RP ++LP ++ SM T + + +I++VPV Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142 >SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 25.0 bits (52), Expect = 4.9 Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 97 TLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSW 147 T K TF + S+ EE++ + DE + ++ + K +P+I ++ Sbjct: 245 TTDKMTTFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEISNY 295 >SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 878 Score = 25.0 bits (52), Expect = 4.9 Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 21 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEV 62 P+ + LV +P+ +PN+ +++ +YDI L Y + Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646 >SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 891 Score = 24.6 bits (51), Expect = 6.5 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 65 VDVRTKINMGKFKKDVVKGYVIKEDDVKVA 94 V+ R ++N+G V K Y IKED K A Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPA 292 >SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 24.6 bits (51), Expect = 6.5 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 94 AFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKN 130 +F + T T + P F K+ ++ + S+DESK N Sbjct: 406 SFESYHNTQTIQSPMKFTKATPLKDNESASVDESKVN 442 >SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 459 Score = 24.6 bits (51), Expect = 6.5 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 70 KINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKK 129 ++ G F KD+ G + E A V K+ T D F K H L+ ++K Sbjct: 310 RLQYGLFLKDI--GLSVDE-----ALVFWRKSFTNVTEDKFNKEYRYNIRHTYGLEGNRK 362 Query: 130 NFRKY 134 N++ Y Sbjct: 363 NYKGY 367 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 24.6 bits (51), Expect = 6.5 Identities = 9/28 (32%), Positives = 18/28 (64%) Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDI 144 ++E S + +KNFR+ ++ + S P+I Sbjct: 110 KQEQLDSFEILRKNFRETLEESSSNPNI 137 >SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 818 Score = 24.6 bits (51), Expect = 6.5 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 113 SINEEEEHAKSLDESKKNFRKY-IDHNKSRPDIPS 146 SI+ EEH ++D+S R Y +H+ D PS Sbjct: 319 SISSAEEHPSNIDDSSIERRHYDSNHSSQIRDHPS 353 >SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 472 Score = 24.2 bits (50), Expect = 8.5 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 112 KSINEEEEHAKSLDESKKNFRKYIDHNKSRPDI 144 KS EE++H + ++ KK+ +Y D K + I Sbjct: 143 KSKEEEKKHMREFEQIKKSAMRY-DRQKQKEKI 174 >SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1028 Score = 24.2 bits (50), Expect = 8.5 Identities = 8/29 (27%), Positives = 20/29 (68%) Query: 106 YPDLFEKSINEEEEHAKSLDESKKNFRKY 134 + D F++ ++E+ K ++++K+NF K+ Sbjct: 304 FEDCFDQFGVYDKEYEKKIEKTKRNFPKF 332 >SPCC188.06c |srp54||signal recognition particle subunit Srp54|Schizosaccharomyces pombe|chr 3|||Manual Length = 522 Score = 24.2 bits (50), Expect = 8.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 119 EHAKSLDESKKNFRKYIDHNK 139 EH +SLD KKN K ++ K Sbjct: 305 EHVQSLDFDKKNMVKNLEQGK 325 >SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1310 Score = 24.2 bits (50), Expect = 8.5 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 107 PDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSW 147 P L EK++ ++ A S + R+ +D N RP I W Sbjct: 899 PSLDEKTMQLAKQIAVSFHGYEAPTRENLDVNDDRPKISLW 939 >SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 600 Score = 24.2 bits (50), Expect = 8.5 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 16/75 (21%) Query: 71 INMGKF-KKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKK 129 IN G + KKD K + K+ D T ++ + DL EE H K +K Sbjct: 359 INSGLYLKKDAAKNLLAKQFDA---------TYSYYHKDL------EESVHQKLNSNLEK 403 Query: 130 NFRKYIDHNKSRPDI 144 KYI H+ S+ ++ Sbjct: 404 RVEKYIKHSCSQRNV 418 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 815,948 Number of Sequences: 5004 Number of extensions: 35535 Number of successful extensions: 142 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 122 Number of HSP's gapped (non-prelim): 26 length of query: 150 length of database: 2,362,478 effective HSP length: 67 effective length of query: 83 effective length of database: 2,027,210 effective search space: 168258430 effective search space used: 168258430 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 50 (24.2 bits)
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