SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein
L25/L23, IPR012678|Ribosomal L23 and L15e, core
         (150 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    44   1e-05
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    36   0.003
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    32   0.032
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    28   0.69 
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   1.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   2.1  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   2.1  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    26   2.1  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   2.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   2.8  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   4.9  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   4.9  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   4.9  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   4.9  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   6.5  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.5  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   6.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.5  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   6.5  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    24   8.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   8.5  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    24   8.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    24   8.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.5  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 18  VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFK 77
           V+ PN    L R    Q P    F   + + K+D+++YL+ +Y + VV V+++I  GK  
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68

Query: 78  KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 108
           ++ + G V +    K   V + +   F YP+
Sbjct: 69  RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 37  NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 82
           N + FH  ++  K+ IKN ++K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 32.3 bits (70), Expect = 0.032
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 37  NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 82
           N + FH  ++  K+ IK  + K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 15/70 (21%), Positives = 35/70 (50%)

Query: 79  DVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHN 138
           D +K +  + +D  +  VT  K          E +++E+E + + + E+K+ F + + ++
Sbjct: 274 DELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYS 333

Query: 139 KSRPDIPSWF 148
            +  D+ S F
Sbjct: 334 CAEDDLKSLF 343


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 95  FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 134
           F+T+ +T+   YPD+ +K      + ++ +  S   F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 85  VIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDI 144
           ++KE    +  +   K++  KY +  E+S +E+E      ++ ++ F   + +  S P  
Sbjct: 97  IVKESKEGIT-LNKKKSLEIKYDE--ERSFDEKENDESEFEDGQQGFIPLLVNRNSDPSE 153

Query: 145 PSWFSI 150
            S FS+
Sbjct: 154 KSTFSL 159


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 98  LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 142
           +PK  T +  +  EK   EEEE  + L+   +   + +DH    P
Sbjct: 1   MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELP 45


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 105 KYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 142
           K  D+ E    EEE  +++LD  +K F +Y    K  P
Sbjct: 373 KVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTP 410


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 107 PDLFEKSINEEEEHAKSLDESKKNF---RKY 134
           PDL E+S  +EE  + S  E K NF   RKY
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 44  SMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIK-------EDDVKVAFV 96
           S+E    ++K    +  ++    + T +N  + KK+  K +++K       EDD+     
Sbjct: 297 SVEDDSLELKEITPEALDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELE 356

Query: 97  TLPKTMTFKYPDLFEKSINEEEEH 120
              K  T    ++ +  ++EE EH
Sbjct: 357 IEVKPKTTALDNIEKSKLSEENEH 380


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 8   IYQRGNPQLRVFLPNFWMKLVRPHPKQLP-NIVHFHCSMEMTKYDIKNYLEKIYEVPVVD 66
           +Y  G+ +L++    F    + P  K+L  NIV     +E+T  D+ NY   I +  + D
Sbjct: 58  LYGPGSEKLKIDQRTF----LTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKD 113

Query: 67  VRTKINMGKFKKDVVKGYVIKEDD--VKVAFVTLPKTM 102
           V     +    K + K  VI   D   + A   L +TM
Sbjct: 114 VAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTM 151


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 29  RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPV 64
           RP  ++LP    ++ SM  T + +     +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 97  TLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSW 147
           T  K  TF      + S+ EE++  +  DE  +  ++  +  K +P+I ++
Sbjct: 245 TTDKMTTFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEISNY 295


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 21  PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEV 62
           P+  + LV  +P+ +PN+      +++ +YDI   L   Y +
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 65  VDVRTKINMGKFKKDVVKGYVIKEDDVKVA 94
           V+ R ++N+G     V K Y IKED  K A
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPA 292


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 94  AFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKN 130
           +F +   T T + P  F K+   ++  + S+DESK N
Sbjct: 406 SFESYHNTQTIQSPMKFTKATPLKDNESASVDESKVN 442


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 70  KINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKK 129
           ++  G F KD+  G  + E     A V   K+ T    D F K       H   L+ ++K
Sbjct: 310 RLQYGLFLKDI--GLSVDE-----ALVFWRKSFTNVTEDKFNKEYRYNIRHTYGLEGNRK 362

Query: 130 NFRKY 134
           N++ Y
Sbjct: 363 NYKGY 367


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 117 EEEHAKSLDESKKNFRKYIDHNKSRPDI 144
           ++E   S +  +KNFR+ ++ + S P+I
Sbjct: 110 KQEQLDSFEILRKNFRETLEESSSNPNI 137


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 113 SINEEEEHAKSLDESKKNFRKY-IDHNKSRPDIPS 146
           SI+  EEH  ++D+S    R Y  +H+    D PS
Sbjct: 319 SISSAEEHPSNIDDSSIERRHYDSNHSSQIRDHPS 353


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 112 KSINEEEEHAKSLDESKKNFRKYIDHNKSRPDI 144
           KS  EE++H +  ++ KK+  +Y D  K +  I
Sbjct: 143 KSKEEEKKHMREFEQIKKSAMRY-DRQKQKEKI 174


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/29 (27%), Positives = 20/29 (68%)

Query: 106 YPDLFEKSINEEEEHAKSLDESKKNFRKY 134
           + D F++    ++E+ K ++++K+NF K+
Sbjct: 304 FEDCFDQFGVYDKEYEKKIEKTKRNFPKF 332


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 119 EHAKSLDESKKNFRKYIDHNK 139
           EH +SLD  KKN  K ++  K
Sbjct: 305 EHVQSLDFDKKNMVKNLEQGK 325


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 107 PDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSW 147
           P L EK++   ++ A S    +   R+ +D N  RP I  W
Sbjct: 899 PSLDEKTMQLAKQIAVSFHGYEAPTRENLDVNDDRPKISLW 939


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 16/75 (21%)

Query: 71  INMGKF-KKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKK 129
           IN G + KKD  K  + K+ D          T ++ + DL      EE  H K     +K
Sbjct: 359 INSGLYLKKDAAKNLLAKQFDA---------TYSYYHKDL------EESVHQKLNSNLEK 403

Query: 130 NFRKYIDHNKSRPDI 144
              KYI H+ S+ ++
Sbjct: 404 RVEKYIKHSCSQRNV 418


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,948
Number of Sequences: 5004
Number of extensions: 35535
Number of successful extensions: 142
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 26
length of query: 150
length of database: 2,362,478
effective HSP length: 67
effective length of query: 83
effective length of database: 2,027,210
effective search space: 168258430
effective search space used: 168258430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)

- SilkBase 1999-2023 -