BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein L25/L23, IPR012678|Ribosomal L23 and L15e, core (150 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_0070 + 13045122-13045715 36 0.014 05_07_0307 - 29111643-29112104,29112222-29113214 31 0.52 11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577... 29 2.1 09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 3.6 07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187... 27 6.4 06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 27 6.4 03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 27 6.4 >07_03_0070 + 13045122-13045715 Length = 197 Score = 35.9 bits (79), Expect = 0.014 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 18 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIKNYLEKIYEVPVVDVRTKINMGK 75 + N +KL+ P P L ++ F +K DI+ LE +Y V +VRT +NM + Sbjct: 10 IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66 Query: 76 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKSLDESKK 129 KK ++ + D K A+VTL + PDLF + E E A + +K Sbjct: 67 GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKASAAAARRK 121 >05_07_0307 - 29111643-29112104,29112222-29113214 Length = 484 Score = 30.7 bits (66), Expect = 0.52 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 5/135 (3%) Query: 12 GNPQLRVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIKNYLEKIYEVPVVDVR 68 G ++ VF N+ +L + P ++ +H +C+ E + NY Y V ++ Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408 Query: 69 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESK 128 I V +++ DD+ VA + L + + K D E E + A E Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASE--TKAESKDANKQTEEN 466 Query: 129 KNFRKYIDHNKSRPD 143 K+ + + N S D Sbjct: 467 KDSKAMENKNDSSTD 481 >11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763, 5775157-5775303,5775423-5775628,5776391-5776580 Length = 306 Score = 28.7 bits (61), Expect = 2.1 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 87 KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 138 KED+ A + P YPDLFE+ E H+ S++ + KK +Y HN Sbjct: 42 KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99 >09_06_0371 + 22615809-22617431,22618312-22618422,22619361-22619453, 22619562-22619661,22619754-22619834,22620774-22621047, 22621254-22622069,22622921-22623029,22623509-22623602, 22623881-22623939,22624150-22624197 Length = 1135 Score = 27.9 bits (59), Expect = 3.6 Identities = 11/38 (28%), Positives = 19/38 (50%) Query: 15 QLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 52 +L VF P W ++ H ++ NI+ +E+ DI Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584 >07_03_0923 - 22617627-22617860,22618486-22618542,22618612-22618768, 22618875-22619014,22619642-22619777,22619874-22620142, 22620272-22620492,22620648-22620707,22620859-22620915, 22621008-22621405,22621929-22622000,22622098-22622169, 22622246-22622317,22622574-22622645,22622738-22622867, 22623065-22623170 Length = 750 Score = 27.1 bits (57), Expect = 6.4 Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 14 PQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINM 73 P+ R + L R H K L I H CS+ +Y + ++I V + R + Sbjct: 657 PEFRPSMSEVVQDLTRMHEKGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKNRRFNVAP 716 Query: 74 GKFKKDVVKGYV 85 F ++ G++ Sbjct: 717 QWFSSEISMGFI 728 >06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820, 3764013-3764961,3766967-3767064,3768144-3768284, 3768758-3768874,3768924-3769013,3769014-3771818 Length = 1632 Score = 27.1 bits (57), Expect = 6.4 Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 9 YQRGNPQLRVFLPNFWMKLVRPHPKQL 35 + R N R+F+P KL+RP+ K+L Sbjct: 1010 HSRSNEFKRLFVPEAIRKLIRPYDKEL 1036 >03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030, 30560455-30560718,30560803-30560940,30561264-30561315, 30561525-30561604,30561929-30561988,30562084-30562164, 30562299-30562376,30563548-30563676,30563896-30564039, 30564145-30564290,30564402-30564558,30564657-30564715, 30564800-30564959,30565054-30565203,30565309-30565445, 30565531-30565677,30565995-30566052,30566417-30566518, 30566590-30566627,30566846-30566972,30567053-30567223, 30567313-30567444,30567575-30567681,30567815-30567875, 30567970-30568147,30568245-30568450,30568781-30568879, 30569021-30569236,30569333-30569472,30569559-30569660, 30569747-30569861,30570129-30570194,30570323-30570480, 30570594-30570690,30570931-30571137,30571435-30571505, 30571648-30571747,30571836-30571892,30571969-30572025, 30572108-30572188,30572319-30572401,30572504-30572651 Length = 1722 Score = 27.1 bits (57), Expect = 6.4 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%) Query: 42 HCSMEMTKYDIKNYLE----KIYEVPVVD---VRTKINMGKFKKDVVKGYVIKEDDVKVA 94 H ++E K D K +E KI EVPVVD V K +D + + K +D++ Sbjct: 1186 HAAIEKEKEDAKLAIEQAPPKIVEVPVVDNAKVELLTRQNKELEDELVTFRTKAEDLEKR 1245 Query: 95 FVTLPKTMTFKYPDLFEK--SINEEEEHAKSLD 125 + + K ++ EK +N+ +E + L+ Sbjct: 1246 LLEVQKESDELSREILEKDSKLNQLQEMIERLE 1278 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,619,916 Number of Sequences: 37544 Number of extensions: 184001 Number of successful extensions: 481 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 478 Number of HSP's gapped (non-prelim): 7 length of query: 150 length of database: 14,793,348 effective HSP length: 76 effective length of query: 74 effective length of database: 11,940,004 effective search space: 883560296 effective search space used: 883560296 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 56 (26.6 bits)
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