Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein
L25/L23, IPR012678|Ribosomal L23 and L15e, core
(150 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0070 + 13045122-13045715 36 0.014
05_07_0307 - 29111643-29112104,29112222-29113214 31 0.52
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577... 29 2.1
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 3.6
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187... 27 6.4
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 27 6.4
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 27 6.4
>07_03_0070 + 13045122-13045715
Length = 197
Score = 35.9 bits (79), Expect = 0.014
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 18 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIKNYLEKIYEVPVVDVRTKINMGK 75
+ N +KL+ P P L ++ F +K DI+ LE +Y V +VRT +NM +
Sbjct: 10 IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66
Query: 76 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKSLDESKK 129
KK ++ + D K A+VTL + PDLF + E E A + +K
Sbjct: 67 GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKASAAAARRK 121
>05_07_0307 - 29111643-29112104,29112222-29113214
Length = 484
Score = 30.7 bits (66), Expect = 0.52
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 12 GNPQLRVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIKNYLEKIYEVPVVDVR 68
G ++ VF N+ +L + P ++ +H +C+ E + NY Y V ++
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408
Query: 69 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESK 128
I V +++ DD+ VA + L + + K D E E + A E
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASE--TKAESKDANKQTEEN 466
Query: 129 KNFRKYIDHNKSRPD 143
K+ + + N S D
Sbjct: 467 KDSKAMENKNDSSTD 481
>11_01_0701 -
5774234-5774404,5774456-5774456,5774558-5774763,
5775157-5775303,5775423-5775628,5776391-5776580
Length = 306
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 87 KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 138
KED+ A + P YPDLFE+ E H+ S++ + KK +Y HN
Sbjct: 42 KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 15 QLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 52
+L VF P W ++ H ++ NI+ +E+ DI
Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584
>07_03_0923 -
22617627-22617860,22618486-22618542,22618612-22618768,
22618875-22619014,22619642-22619777,22619874-22620142,
22620272-22620492,22620648-22620707,22620859-22620915,
22621008-22621405,22621929-22622000,22622098-22622169,
22622246-22622317,22622574-22622645,22622738-22622867,
22623065-22623170
Length = 750
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 14 PQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINM 73
P+ R + L R H K L I H CS+ +Y + ++I V + R +
Sbjct: 657 PEFRPSMSEVVQDLTRMHEKGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKNRRFNVAP 716
Query: 74 GKFKKDVVKGYV 85
F ++ G++
Sbjct: 717 QWFSSEISMGFI 728
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 9 YQRGNPQLRVFLPNFWMKLVRPHPKQL 35
+ R N R+F+P KL+RP+ K+L
Sbjct: 1010 HSRSNEFKRLFVPEAIRKLIRPYDKEL 1036
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.1 bits (57), Expect = 6.4
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 42 HCSMEMTKYDIKNYLE----KIYEVPVVD---VRTKINMGKFKKDVVKGYVIKEDDVKVA 94
H ++E K D K +E KI EVPVVD V K +D + + K +D++
Sbjct: 1186 HAAIEKEKEDAKLAIEQAPPKIVEVPVVDNAKVELLTRQNKELEDELVTFRTKAEDLEKR 1245
Query: 95 FVTLPKTMTFKYPDLFEK--SINEEEEHAKSLD 125
+ + K ++ EK +N+ +E + L+
Sbjct: 1246 LLEVQKESDELSREILEKDSKLNQLQEMIERLE 1278
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,619,916
Number of Sequences: 37544
Number of extensions: 184001
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 7
length of query: 150
length of database: 14,793,348
effective HSP length: 76
effective length of query: 74
effective length of database: 11,940,004
effective search space: 883560296
effective search space used: 883560296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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