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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein
L25/L23, IPR012678|Ribosomal L23 and L15e, core
         (150 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0070 + 13045122-13045715                                         36   0.014
05_07_0307 - 29111643-29112104,29112222-29113214                       31   0.52 
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577...    29   2.1  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    28   3.6  
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    27   6.4  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    27   6.4  
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600...    27   6.4  

>07_03_0070 + 13045122-13045715
          Length = 197

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 18  VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIKNYLEKIYEVPVVDVRTKINMGK 75
           +   N  +KL+ P P  L ++  F        +K DI+  LE +Y   V +VRT +NM +
Sbjct: 10  IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66

Query: 76  FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKSLDESKK 129
            KK     ++  + D K A+VTL   +    PDLF     + E E  A +    +K
Sbjct: 67  GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKASAAAARRK 121


>05_07_0307 - 29111643-29112104,29112222-29113214
          Length = 484

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 12  GNPQLRVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIKNYLEKIYEVPVVDVR 68
           G  ++ VF  N+  +L +    P ++   +H  +C+ E  +    NY    Y V   ++ 
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408

Query: 69  TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESK 128
             I         V   +++ DD+ VA + L + +  K  D  E     E + A    E  
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASE--TKAESKDANKQTEEN 466

Query: 129 KNFRKYIDHNKSRPD 143
           K+ +   + N S  D
Sbjct: 467 KDSKAMENKNDSSTD 481


>11_01_0701 -
           5774234-5774404,5774456-5774456,5774558-5774763,
           5775157-5775303,5775423-5775628,5776391-5776580
          Length = 306

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 87  KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 138
           KED+   A  +  P      YPDLFE+    E     H+ S++  + KK   +Y  HN
Sbjct: 42  KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 15  QLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 52
           +L VF P  W  ++  H ++  NI+     +E+   DI
Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584


>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/72 (23%), Positives = 30/72 (41%)

Query: 14  PQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINM 73
           P+ R  +      L R H K L  I H  CS+   +Y   +  ++I    V + R  +  
Sbjct: 657 PEFRPSMSEVVQDLTRMHEKGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKNRRFNVAP 716

Query: 74  GKFKKDVVKGYV 85
             F  ++  G++
Sbjct: 717 QWFSSEISMGFI 728


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 9    YQRGNPQLRVFLPNFWMKLVRPHPKQL 35
            + R N   R+F+P    KL+RP+ K+L
Sbjct: 1010 HSRSNEFKRLFVPEAIRKLIRPYDKEL 1036


>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
            30560455-30560718,30560803-30560940,30561264-30561315,
            30561525-30561604,30561929-30561988,30562084-30562164,
            30562299-30562376,30563548-30563676,30563896-30564039,
            30564145-30564290,30564402-30564558,30564657-30564715,
            30564800-30564959,30565054-30565203,30565309-30565445,
            30565531-30565677,30565995-30566052,30566417-30566518,
            30566590-30566627,30566846-30566972,30567053-30567223,
            30567313-30567444,30567575-30567681,30567815-30567875,
            30567970-30568147,30568245-30568450,30568781-30568879,
            30569021-30569236,30569333-30569472,30569559-30569660,
            30569747-30569861,30570129-30570194,30570323-30570480,
            30570594-30570690,30570931-30571137,30571435-30571505,
            30571648-30571747,30571836-30571892,30571969-30572025,
            30572108-30572188,30572319-30572401,30572504-30572651
          Length = 1722

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 42   HCSMEMTKYDIKNYLE----KIYEVPVVD---VRTKINMGKFKKDVVKGYVIKEDDVKVA 94
            H ++E  K D K  +E    KI EVPVVD   V       K  +D +  +  K +D++  
Sbjct: 1186 HAAIEKEKEDAKLAIEQAPPKIVEVPVVDNAKVELLTRQNKELEDELVTFRTKAEDLEKR 1245

Query: 95   FVTLPKTMTFKYPDLFEK--SINEEEEHAKSLD 125
             + + K       ++ EK   +N+ +E  + L+
Sbjct: 1246 LLEVQKESDELSREILEKDSKLNQLQEMIERLE 1278


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,619,916
Number of Sequences: 37544
Number of extensions: 184001
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 7
length of query: 150
length of database: 14,793,348
effective HSP length: 76
effective length of query: 74
effective length of database: 11,940,004
effective search space: 883560296
effective search space used: 883560296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)

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