Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001474-TA|BGIBMGA001474-PA|IPR013025|Ribosomal protein
L25/L23, IPR012678|Ribosomal L23 and L15e, core
(150 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.075
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.099
SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095) 29 1.2
SB_25248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2) 29 2.1
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2) 29 2.1
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 28 2.8
SB_19741| Best HMM Match : RVT_1 (HMM E-Value=2.2) 28 3.7
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18) 28 3.7
SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 27 4.9
SB_49815| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_39811| Best HMM Match : DUF1299 (HMM E-Value=6.4) 27 4.9
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_49384| Best HMM Match : GNT-I (HMM E-Value=0) 27 6.5
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 27 6.5
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13) 27 8.6
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 27 8.6
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36) 27 8.6
SB_1913| Best HMM Match : Arf (HMM E-Value=0.015) 27 8.6
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047) 27 8.6
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043) 27 8.6
SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4) 27 8.6
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 33.5 bits (73), Expect = 0.075
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 46 EMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFK 105
E KY + Y +K + + +++TK N+ K KK+ K K K KT K
Sbjct: 35 EEEKYKEEEYEDKDWNMKSKNMKTK-NI-KTKKNTTKNMKRKNMKTKNMETKNVKTKNMK 92
Query: 106 YPDLFEKSINEEEEHAKSLDESKKNFRKYID 136
D+ K+I + K++ +KK KY D
Sbjct: 93 TKDMKTKNIKTKNNTTKNMKTNKKEDEKYGD 123
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 33.1 bits (72), Expect = 0.099
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 46 EMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTM 102
E+ K D+ +E V + + +T + F KD+VKGYVI ++D + + + T+
Sbjct: 1121 EIAKVDVGFIIESSRTVGLDNFKTVLT---FVKDIVKGYVISQNDSRFGIIIVSSTL 1174
>SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)
Length = 486
Score = 29.5 bits (63), Expect = 1.2
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 18 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEV-PVVDVRTKINMGKF 76
+FLP+ ++ VR + + + + F S++ T ++ + +E P+ ++R K
Sbjct: 284 IFLPSGYIHQVRSYGRSISATMLFTASVDNT-FEADGCENETFEYKPLSEMRVHWTYKKG 342
Query: 77 KKDVVKGYVIKEDDVKVAFVTLPKT-MTFKYPDLFEKSINE-----EEEHAKSLDESKKN 130
K V GY E+ + + +T DLF++ I+E E++ K + K
Sbjct: 343 DKVVPMGYQNVENFRHNIIRQMGEVGVTQLTADLFQRFIDETFELEEDDERKLKRDPVKL 402
Query: 131 FRKYIDHNK 139
F KY+D K
Sbjct: 403 FAKYLDKEK 411
>SB_25248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 69 TKINMGKFKKDVVK--GYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDE 126
TK +GK K ++ V++ ++ L ++T YP + + ++ + A + DE
Sbjct: 32 TKPEIGKISKKILDRINSVMQRNETSTNGKALKPSLTEFYPSISQDLLSRALDFASNYDE 91
Query: 127 SKKNFRKYIDHNKS 140
+ ++ I H+KS
Sbjct: 92 ITPDEKEIITHSKS 105
>SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
Length = 228
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 78 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDH 137
KD K + ++D K PK +P +K E +EH S D+ K + H
Sbjct: 91 KDQSKDHKDQKDHAKDHSKDHPKDHPKNHPSKDQKGSKETKEHKDSKDKDSKEHKDQKSH 150
Query: 138 N 138
N
Sbjct: 151 N 151
>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
Length = 379
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 78 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDH 137
KD K + ++D K PK +P +K E +EH S D+ K + H
Sbjct: 32 KDQSKDHKDQKDHAKDHSKDHPKDHPKNHPSKDQKGSKETKEHKDSKDKDSKEHKDQKSH 91
Query: 138 N 138
N
Sbjct: 92 N 92
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 51 DIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLF 110
+IK E E+ ++++R K+ + +K G +EDD+K + + + + +L
Sbjct: 505 EIKTLKEASKELELIELREKLTKSEEEKMATLGKAQQEDDIK-SLMEKIASKEAELRELG 563
Query: 111 EKSINEEEEHAKSL 124
EK E+E + L
Sbjct: 564 EKLTKSEQEKSDEL 577
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 22 NFWMKLVRPHPKQLPNIVHFHCSMEMT-KYDIKNYLEKIYEVPVVDVRTKINMGKFKKDV 80
++W+ L +P KQL N H + +T K+ +K ++ Y + ++ + + KK+V
Sbjct: 635 DWWLDLAKPVAKQLSN--HGRIAAVVTLKFRVKYFVCNAYSLQ-EEIARYLYYLQLKKNV 691
Query: 81 VKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSIN 115
+ G ++ ++ V + F Y + K ++
Sbjct: 692 LAGLLLCDEQAAVVLASYIAQGDFAYTPISIKVVS 726
>SB_19741| Best HMM Match : RVT_1 (HMM E-Value=2.2)
Length = 593
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 48 TKYDIKNYLEKIYEV--PVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFK 105
TK +I +KI + V++ + N K K V+ + E+ ++ F+ + F
Sbjct: 85 TKPEIGKISKKILDRINSVIEKKRNFNQWKSTKAVIDWFKAAENKHQLNFICFD-IVEF- 142
Query: 106 YPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKS 140
YP + + ++ + A + DE + ++ I H+KS
Sbjct: 143 YPSISQDLLSRALDFASNYDEITPDEKEIITHSKS 177
>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
Length = 417
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 105 KYPDLFEKSINEEEEHAKSLDESKKN 130
KY + FE+ + E HAK ++++KK+
Sbjct: 238 KYAEEFEREVESEIMHAKPINQNKKS 263
>SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 611
Score = 27.5 bits (58), Expect = 4.9
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 48 TKYDIKNYLEKIYEV--PVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFK 105
TK +I +KI + V+ + N K K V+ + E+ ++ F+ + F
Sbjct: 103 TKPEIGKISKKILDRINSVIAKKRNFNQWKSTKAVIDWFKAAENKHQLNFICFD-IVEF- 160
Query: 106 YPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKS 140
YP + + ++ + A + DE + R+ I H+KS
Sbjct: 161 YPSISQDLLSRALDFASNYDEITPDEREIITHSKS 195
>SB_49815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 92 KVAFVTLP-KTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIP 145
K++ LP T+ D+ K I+E+ H LD K F +DH++S PD P
Sbjct: 86 KLSVEVLPGSTLGISTKDVIVKVIDEKPTHTY-LD--KAIFDAILDHHRSNPDKP 137
>SB_39811| Best HMM Match : DUF1299 (HMM E-Value=6.4)
Length = 225
Score = 27.5 bits (58), Expect = 4.9
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 48 TKYDIKNYLEKIYEV--PVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFK 105
TK +I +KI + V+ + N K K V+ + E+ +++F+ + F
Sbjct: 85 TKPEIGKISKKILDRINSVIAKKRNFNQWKSTKAVIDWFKAAENKHQLSFICFD-IVEF- 142
Query: 106 YPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKS 140
YP + + ++ + A + DE + ++ I H+KS
Sbjct: 143 YPSISQDLLSRALDFASNYDEITPDEKEIITHSKS 177
>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 115 NEEEEHAKSLDESKKNFRKY-IDHNKSRPDIP 145
NEE SL+ KKN KY + +N R +P
Sbjct: 127 NEESSDTSSLENKKKNLNKYPVKNNADRLLVP 158
>SB_49384| Best HMM Match : GNT-I (HMM E-Value=0)
Length = 361
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 29 RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIY--------EVPVVDVRTKINMGKFK 77
RP + P IV C + T IK+Y +KI ++PVV K MG +K
Sbjct: 83 RPSAETFPIIVSQDCGHQQTANVIKSYGDKIQFFQQPDLGDIPVVPANMKHFMGYYK 139
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 116 EEEEHAKSLDESKKNFRKYIDHNKSRPDIPS 146
EEEEH K +E K F K ++ K++P S
Sbjct: 717 EEEEHRKQNEEKKPEFMK-VNLRKAKPQTAS 746
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 110 FEKSINEEEEHAKSLDESKKNF 131
FEKS++ EE+ +SL+ S K F
Sbjct: 1732 FEKSLSTYEENIRSLESSAKQF 1753
>SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)
Length = 209
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 28 VRPHPKQLPNIVHFHCSMEMTKYD 51
V P P LP + H +E T YD
Sbjct: 8 VNPGPTPLPELAHVSIGLESTSYD 31
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 66 DVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS 113
++R + + FK V + Y + E DV V P + ++ DL EK+
Sbjct: 1226 NIRYRASSMSFKTPVYRLYAMSECDVNKMHVDSPYLLFYQQDDLNEKA 1273
>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
Length = 888
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 28 VRPHPKQLPNIVHFHCSMEMTKYD 51
V P P LP + H +E T YD
Sbjct: 711 VNPGPTPLPELAHVSIGLESTSYD 734
>SB_1913| Best HMM Match : Arf (HMM E-Value=0.015)
Length = 777
Score = 26.6 bits (56), Expect = 8.6
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 48 TKYDIKNYLEKIYEV--PVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFK 105
TK +I +KI + V+ + N K K V+ + E+ ++ F+ + F
Sbjct: 269 TKSEIGKISKKILDRINSVIAKKRNFNQWKSTKAVIDWFKAAENKHQLNFICFD-IVEF- 326
Query: 106 YPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKS 140
YP + + ++ + A + DE + ++ I H+KS
Sbjct: 327 YPSISQDLLSRALDFASNYDEITPDEKEIITHSKS 361
>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
Length = 632
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 99 PKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRK 133
P T T +YP SI +E + + LD+ +N R+
Sbjct: 310 PDTQTCEYPQDKHSSILDENKQMQDLDKRSQNNRR 344
>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
Length = 831
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 88 EDDVKVAFVTLPKTMTFKYPDLFEKSINE----EEEHAKSLDESKKNFRKYIDHN 138
EDD FV LP TMT K E + E +++ D K N K +D +
Sbjct: 666 EDDNDAPFVMLPPTMTSKSDKTSESNKEEDSDDDDDDDYGDDSDKSNEAKVLDRD 720
>SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)
Length = 526
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 89 DDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFR 132
+DVK + L T T Y K EE +++ +DE+++ R
Sbjct: 109 EDVKECYYYLDSTPTHSYMKALYKYPQEEFPYSRLIDENRRRSR 152
>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 26.6 bits (56), Expect = 8.6
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 57 EKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINE 116
+K ++ VD+ + +M + + I DD A + P T+ LF K +
Sbjct: 10 KKREQLLTVDLLARASMKNAARTIFLPKEISPDD---ALLFRPLTVASVIIRLFHKILAR 66
Query: 117 EEEHAKSLDESKKNFRK 133
E + LD+S+K F+K
Sbjct: 67 RFESSLPLDQSQKGFKK 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,557,534
Number of Sequences: 59808
Number of extensions: 229601
Number of successful extensions: 831
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 27
length of query: 150
length of database: 16,821,457
effective HSP length: 76
effective length of query: 74
effective length of database: 12,276,049
effective search space: 908427626
effective search space used: 908427626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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